Wall clock time and date at job start Tue Mar 31 2020 06:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47032 * 2 1 4 4 H 1.08996 * 110.41786 * 304.14179 * 3 2 1 5 5 C 1.54479 * 110.37139 * 181.83208 * 3 2 1 6 6 C 1.54514 * 104.06221 * 217.19081 * 5 3 2 7 7 C 1.54482 * 104.06276 * 359.97438 * 6 5 3 8 8 H 1.08997 * 110.46393 * 265.10122 * 7 6 5 9 9 C 1.50699 * 110.37262 * 142.81064 * 7 6 5 10 10 O 1.20823 * 119.99963 * 248.16739 * 9 7 6 11 11 O 1.34231 * 119.99761 * 68.16249 * 9 7 6 12 12 C 1.45206 * 116.99738 * 180.02562 * 11 9 7 13 13 H 1.09000 * 109.47070 * 30.00177 * 12 11 9 14 14 C 1.50701 * 109.47004 * 270.00284 * 12 11 9 15 15 H 1.07993 * 120.00098 * 119.99989 * 14 12 11 16 16 C 1.37880 * 119.99861 * 299.99776 * 14 12 11 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47295 * 60.00554 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 C 1.50699 * 109.47021 * 150.00237 * 12 11 9 23 23 C 1.34512 * 125.78803 * 219.99797 * 22 12 11 24 24 C 1.41382 * 106.84050 * 180.02562 * 23 22 12 25 25 C 1.34521 * 106.83972 * 0.02562 * 24 23 22 26 26 O 1.34301 * 108.41905 * 359.73391 * 25 24 23 27 27 O 1.44424 * 104.80140 * 23.98086 * 7 6 5 28 28 H 1.09002 * 109.47035 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47441 * 300.00157 * 1 2 3 30 30 H 1.09010 * 109.46956 * 60.00365 * 1 2 3 31 31 H 1.08998 * 109.47441 * 239.99843 * 2 1 3 32 32 H 1.09003 * 109.47054 * 120.00035 * 2 1 3 33 33 H 1.09009 * 110.50948 * 335.83134 * 5 3 2 34 34 H 1.08998 * 110.51187 * 98.40875 * 5 3 2 35 35 H 1.09002 * 110.50788 * 241.35120 * 6 5 3 36 36 H 1.09006 * 110.51020 * 118.64324 * 6 5 3 37 37 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 38 38 H 1.07996 * 126.58167 * 359.97211 * 23 22 12 39 39 H 1.08002 * 126.58210 * 180.02562 * 24 23 22 40 40 H 1.07994 * 125.78430 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6262 1.9921 -0.8454 5 6 3.5839 1.4670 -0.0463 6 6 3.9678 2.6571 0.8613 7 6 2.6104 3.2112 1.3480 8 1 2.2836 4.0328 0.7106 9 6 2.7136 3.6686 2.7802 10 8 2.1263 3.0695 3.6495 11 8 3.4582 4.7417 3.0900 12 6 3.5123 5.1247 4.4896 13 1 3.3979 4.2382 5.1135 14 6 2.3993 6.0959 4.7880 15 1 1.6523 5.8504 5.5282 16 6 2.3348 7.2981 4.1159 17 7 3.2443 7.5970 3.2142 18 14 0.9557 8.5023 4.4863 19 1 1.0117 8.8941 5.9176 20 1 1.1111 9.7097 3.6358 21 1 -0.3524 7.8604 4.1996 22 6 4.8394 5.7764 4.7811 23 6 5.5771 5.5965 5.8914 24 6 6.7355 6.3941 5.7472 25 6 6.6362 7.0141 4.5576 26 8 5.4883 6.6319 3.9744 27 8 1.6973 2.0974 1.2405 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.9927 0.5373 0.3497 34 1 3.9328 1.6331 -1.0655 35 1 4.5066 3.4139 0.2911 36 1 4.5664 2.3158 1.7059 37 1 3.1987 8.4426 2.7412 38 1 5.3312 4.9648 6.7322 39 1 7.5449 6.4876 6.4562 40 1 7.3589 7.6996 4.1404 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350311742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:32 Heat of formation + Delta-G solvation = -135.400783 kcal Electronic energy + Delta-G solvation = -24293.467209 eV Core-core repulsion = 20653.576595 eV Total energy + Delta-G solvation = -3639.890614 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.04878 -41.48307 -40.05788 -37.29926 -34.99792 -34.56722 -33.57996 -33.16966 -31.74874 -29.81596 -28.37790 -25.94464 -24.76439 -22.86948 -22.38701 -21.94926 -21.55781 -21.20600 -19.09312 -18.33319 -18.16328 -17.66930 -17.11258 -17.05770 -16.71197 -16.25667 -15.85636 -15.48564 -14.87544 -14.64704 -14.52193 -14.37534 -14.02848 -13.67653 -13.57400 -13.38071 -13.09508 -13.02897 -12.89429 -12.78765 -12.72172 -12.39641 -12.26414 -11.90507 -11.86424 -11.73169 -11.53391 -11.26267 -11.01385 -10.86668 -10.74577 -10.49961 -9.10363 -8.25488 -6.56121 1.14005 1.33867 1.37060 1.39670 1.45469 1.75511 2.00801 2.31461 2.58524 2.97097 3.09112 3.48554 3.67792 3.84749 3.92522 4.14105 4.17611 4.28625 4.34736 4.38081 4.39930 4.44291 4.57053 4.63427 4.74981 4.88264 4.94794 4.99671 5.07753 5.12483 5.13961 5.20639 5.24616 5.41180 5.44203 5.54280 5.75131 5.81394 5.85908 5.92241 6.47336 6.70882 7.06423 7.21963 8.72457 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.016180 B = 0.004984 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.080137 B = 5617.151977 C = 6649.972776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C 0.058 3.942 4 H 0.087 0.913 5 C -0.137 4.137 6 C -0.135 4.135 7 C 0.087 3.913 8 H 0.110 0.890 9 C 0.454 3.546 10 O -0.548 6.548 11 O -0.341 6.341 12 C 0.278 3.722 13 H 0.054 0.946 14 C -0.582 4.582 15 H 0.058 0.942 16 C 0.044 3.956 17 N -0.841 5.841 18 Si 0.956 3.044 19 H -0.269 1.269 20 H -0.268 1.268 21 H -0.275 1.275 22 C 0.040 3.960 23 C -0.265 4.265 24 C -0.219 4.219 25 C -0.080 4.080 26 O -0.140 6.140 27 O -0.374 6.374 28 H 0.068 0.932 29 H 0.032 0.968 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.063 0.937 37 H 0.271 0.729 38 H 0.144 0.856 39 H 0.171 0.829 40 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.430 -8.127 -9.485 13.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C 0.001 3.999 4 H 0.105 0.895 5 C -0.174 4.174 6 C -0.172 4.172 7 C 0.028 3.972 8 H 0.128 0.872 9 C 0.298 3.702 10 O -0.440 6.440 11 O -0.256 6.256 12 C 0.226 3.774 13 H 0.072 0.928 14 C -0.618 4.618 15 H 0.076 0.924 16 C -0.165 4.165 17 N -0.473 5.473 18 Si 0.779 3.221 19 H -0.194 1.194 20 H -0.192 1.192 21 H -0.201 1.201 22 C -0.013 4.013 23 C -0.284 4.284 24 C -0.238 4.238 25 C -0.148 4.148 26 O -0.032 6.032 27 O -0.294 6.294 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.127 0.873 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.162 0.838 39 H 0.188 0.812 40 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 4.102 -8.102 -9.483 13.130 hybrid contribution -0.780 0.850 0.969 1.507 sum 3.323 -7.252 -8.513 11.667 Atomic orbital electron populations 1.21735 0.95607 1.02127 1.01470 1.21627 0.96572 0.93183 1.03617 1.23513 0.95100 0.95099 0.86154 0.89491 1.23027 0.94696 0.98063 1.01661 1.22850 0.94172 0.99686 1.00528 1.22442 0.93202 0.92192 0.89377 0.87219 1.23766 0.76175 0.77969 0.92308 1.90524 1.44913 1.56879 1.51710 1.86691 1.62771 1.42046 1.34129 1.18612 0.88605 0.92737 0.77470 0.92783 1.21375 1.11876 1.03162 1.25356 0.92412 1.25779 0.98009 0.98849 0.93902 1.70125 1.32531 1.23167 1.21500 0.85664 0.79283 0.78253 0.78862 1.19358 1.19225 1.20065 1.22591 0.93431 0.93588 0.91709 1.21580 0.97526 1.08831 1.00472 1.21900 1.00371 1.01988 0.99537 1.24765 0.89697 1.04426 0.95924 1.84398 1.28163 1.47976 1.42703 1.89239 1.55409 1.42172 1.42604 0.91292 0.94912 0.91788 0.87275 0.92253 0.89509 0.86747 0.87475 0.91795 0.91953 0.83836 0.81183 0.75730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.83 71.98 0.71 -2.42 16 2 C -0.11 -2.21 5.57 30.59 0.17 -2.04 16 3 C 0.06 1.37 3.27 31.10 0.10 1.47 16 4 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 5 C -0.14 -2.73 6.63 31.61 0.21 -2.52 16 6 C -0.13 -3.76 6.62 31.61 0.21 -3.55 16 7 C 0.09 3.21 3.82 30.35 0.12 3.32 16 8 H 0.11 3.79 8.14 -2.39 -0.02 3.78 16 9 C 0.45 22.19 7.16 71.24 0.51 22.70 16 10 O -0.55 -30.26 15.77 28.22 0.45 -29.81 16 11 O -0.34 -18.06 9.26 -49.45 -0.46 -18.52 16 12 C 0.28 15.32 2.58 29.10 0.08 15.39 16 13 H 0.05 3.03 7.15 -2.39 -0.02 3.01 16 14 C -0.58 -33.86 8.90 25.60 0.23 -33.63 16 15 H 0.06 3.41 7.81 -2.91 -0.02 3.38 16 16 C 0.04 2.41 5.24 84.66 0.44 2.86 16 17 N -0.84 -46.53 10.46 21.45 0.22 -46.30 16 18 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 C 0.04 2.02 5.67 24.83 0.14 2.16 16 23 C -0.26 -11.69 10.80 22.19 0.24 -11.45 16 24 C -0.22 -8.10 10.91 22.19 0.24 -7.86 16 25 C -0.08 -3.05 12.09 66.97 0.81 -2.24 16 26 O -0.14 -6.89 8.64 -1.18 -0.01 -6.90 16 27 O -0.37 -13.54 10.26 -130.58 -1.34 -14.88 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.03 0.87 7.91 -2.39 -0.02 0.85 16 30 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 1.59 7.87 -2.38 -0.02 1.57 16 34 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.06 1.96 7.87 -2.38 -0.02 1.95 16 37 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 38 H 0.14 5.81 8.06 -2.91 -0.02 5.79 16 39 H 0.17 4.82 8.06 -2.91 -0.02 4.79 16 40 H 0.23 6.26 8.06 -2.91 -0.02 6.23 16 Total: -1.00 -73.25 340.59 6.12 -67.13 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 1.03 Total: 21.54 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 4.20 Total: -17.80 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.22 Total: -46.30 kcal Atomic # 8 Polarization: -68.74 SS G_CDS: -1.36 Total: -70.10 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -73.25 6.12 -67.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.272 kcal (2) G-P(sol) polarization free energy of solvation -73.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds