Wall clock time and date at job start Tue Mar 31 2020 06:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09004 * 110.27519 * 307.09584 * 3 2 1 5 5 C 1.54947 * 110.31514 * 185.00257 * 3 2 1 6 6 C 1.55310 * 100.94349 * 204.64433 * 5 3 2 7 7 C 1.54383 * 102.25119 * 34.12903 * 6 5 3 8 8 H 1.09001 * 109.83070 * 98.16199 * 7 6 5 9 9 C 1.50705 * 109.82778 * 219.13130 * 7 6 5 10 10 O 1.20823 * 119.99804 * 115.00457 * 9 7 6 11 11 O 1.34229 * 119.99755 * 295.00162 * 9 7 6 12 12 C 1.45199 * 116.99782 * 180.02562 * 11 9 7 13 13 H 1.08998 * 109.47182 * 329.99873 * 12 11 9 14 14 C 1.50703 * 109.47170 * 209.99973 * 12 11 9 15 15 H 1.07997 * 120.00062 * 0.02562 * 14 12 11 16 16 C 1.37877 * 119.99967 * 179.97438 * 14 12 11 17 17 N 1.31515 * 119.99911 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99983 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46993 * 90.00341 * 18 16 14 20 20 H 1.48500 * 109.47207 * 210.00506 * 18 16 14 21 21 H 1.48498 * 109.47077 * 330.00490 * 18 16 14 22 22 C 1.50704 * 109.47307 * 89.99868 * 12 11 9 23 23 C 1.34510 * 125.79052 * 219.71303 * 22 12 11 24 24 C 1.41386 * 106.83918 * 179.88770 * 23 22 12 25 25 C 1.34508 * 106.84072 * 0.37965 * 24 23 22 26 26 O 1.34303 * 125.78594 * 40.02656 * 22 12 11 27 27 O 1.43236 * 107.59267 * 338.64401 * 7 6 5 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 33 33 H 1.09002 * 111.12228 * 322.56051 * 5 3 2 34 34 H 1.08996 * 111.12524 * 86.71798 * 5 3 2 35 35 H 1.08997 * 110.84670 * 152.32061 * 6 5 3 36 36 H 1.09000 * 110.84461 * 275.93800 * 6 5 3 37 37 H 0.97006 * 119.99633 * 180.02562 * 17 16 14 38 38 H 1.07998 * 126.57938 * 0.03214 * 23 22 12 39 39 H 1.07997 * 126.57416 * 180.12214 * 24 23 22 40 40 H 1.08000 * 125.79122 * 179.74792 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5845 2.0042 -0.8156 5 6 3.5841 1.4671 -0.1267 6 6 3.9116 2.8385 0.5246 7 6 2.8320 2.9456 1.6229 8 1 3.2492 2.6403 2.5825 9 6 2.3302 4.3641 1.7099 10 8 1.1824 4.6170 1.4299 11 8 3.1585 5.3463 2.0985 12 6 2.6068 6.6880 2.1598 13 1 1.8167 6.7903 1.4160 14 6 3.6949 7.6919 1.8781 15 1 4.7004 7.3552 1.6730 16 6 3.4066 9.0401 1.8811 17 7 2.1821 9.4501 2.1304 18 14 4.7551 10.2845 1.5311 19 1 4.8139 10.5535 0.0719 20 1 4.4636 11.5474 2.2560 21 1 6.0599 9.7418 1.9873 22 6 2.0387 6.9352 3.5336 23 6 0.8980 7.5939 3.8062 24 6 0.7478 7.5882 5.2121 25 6 1.8099 6.9337 5.7148 26 8 2.5884 6.5404 4.6936 27 8 1.7570 2.0714 1.2601 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 4.0372 0.6485 0.4325 34 1 3.8929 1.4447 -1.1718 35 1 4.9101 2.8319 0.9614 36 1 3.8093 3.6463 -0.2001 37 1 1.9792 10.3987 2.1321 38 1 0.2249 8.0395 3.0888 39 1 -0.0621 8.0288 5.7745 40 1 2.0039 6.7549 6.7621 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350311743.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:36 Heat of formation + Delta-G solvation = -124.156747 kcal Electronic energy + Delta-G solvation = -24183.134362 eV Core-core repulsion = 20543.731326 eV Total energy + Delta-G solvation = -3639.403036 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.33622 -40.23565 -38.70691 -35.64556 -33.71334 -33.28836 -32.18352 -31.69765 -29.83908 -28.68211 -26.63244 -24.57792 -22.95544 -21.91584 -21.28830 -20.60880 -20.06104 -19.24650 -17.58740 -16.93909 -16.66884 -16.18212 -15.99161 -15.46532 -14.86269 -14.74751 -14.45773 -14.02680 -13.71300 -13.44630 -12.99772 -12.90773 -12.87643 -12.21993 -11.91869 -11.84411 -11.70007 -11.57343 -11.52923 -11.26027 -11.15847 -11.05692 -10.95826 -10.90361 -10.69979 -10.38326 -10.12364 -10.05677 -9.41109 -9.20499 -8.81597 -8.64639 -7.24782 -6.21957 -4.40319 2.83667 2.88854 3.17852 3.22058 3.27425 3.33808 3.87487 3.99850 4.19780 4.26259 4.41472 4.56568 4.92760 5.02080 5.04687 5.06987 5.14266 5.31731 5.41583 5.56729 5.64007 5.70901 5.78132 5.83848 5.85472 5.90135 6.00527 6.07942 6.13941 6.26888 6.37345 6.71028 6.95736 6.99527 7.15681 7.24214 7.38678 7.69270 7.70358 7.85678 8.37134 8.52339 8.78209 9.26596 10.76757 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.017824 B = 0.004585 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.531999 B = 6104.977100 C = 7023.208018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C 0.073 3.927 4 H 0.073 0.927 5 C -0.151 4.151 6 C -0.140 4.140 7 C 0.092 3.908 8 H 0.115 0.885 9 C 0.438 3.562 10 O -0.499 6.499 11 O -0.347 6.347 12 C 0.298 3.702 13 H 0.078 0.922 14 C -0.531 4.531 15 H 0.078 0.922 16 C 0.069 3.931 17 N -0.867 5.867 18 Si 0.914 3.086 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.270 1.270 22 C 0.025 3.975 23 C -0.178 4.178 24 C -0.217 4.217 25 C -0.088 4.088 26 O -0.177 6.177 27 O -0.346 6.346 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.269 0.731 38 H 0.141 0.859 39 H 0.131 0.869 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.634 -14.287 -2.194 14.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C 0.016 3.984 4 H 0.091 0.909 5 C -0.189 4.189 6 C -0.178 4.178 7 C 0.033 3.967 8 H 0.132 0.868 9 C 0.279 3.721 10 O -0.387 6.387 11 O -0.264 6.264 12 C 0.245 3.755 13 H 0.095 0.905 14 C -0.568 4.568 15 H 0.096 0.904 16 C -0.136 4.136 17 N -0.502 5.502 18 Si 0.740 3.260 19 H -0.202 1.202 20 H -0.209 1.209 21 H -0.194 1.194 22 C -0.026 4.026 23 C -0.197 4.197 24 C -0.237 4.237 25 C -0.156 4.156 26 O -0.073 6.073 27 O -0.265 6.265 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.159 0.841 39 H 0.149 0.851 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.241 -14.175 -2.111 14.385 hybrid contribution 0.369 1.327 0.047 1.379 sum 1.610 -12.847 -2.064 13.111 Atomic orbital electron populations 1.21740 0.95208 1.01264 1.02729 1.21635 0.96967 0.94476 1.02478 1.23160 0.94266 0.93966 0.86991 0.90862 1.23353 0.95728 0.97499 1.02292 1.23046 0.99236 0.98164 0.97367 1.22164 0.87548 0.85847 1.01177 0.86753 1.23820 0.85080 0.88811 0.74346 1.90622 1.19254 1.83902 1.44883 1.86534 1.43427 1.19334 1.77088 1.19172 0.96012 0.74312 0.85976 0.90504 1.20879 0.95725 0.89492 1.50721 0.90422 1.24949 0.96384 0.98160 0.94149 1.70040 1.18584 1.16180 1.45349 0.86234 0.81388 0.79903 0.78449 1.20173 1.20875 1.19435 1.23529 0.92444 1.00008 0.86589 1.21214 0.99300 1.04807 0.94428 1.21688 1.00660 1.05843 0.95502 1.23603 0.93606 1.06066 0.92296 1.83984 1.45880 1.62934 1.14551 1.88530 1.42336 1.57987 1.37633 0.91754 0.92952 0.92780 0.91149 0.90784 0.89923 0.89524 0.88429 0.89553 0.92147 0.84119 0.85129 0.79856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.85 37.16 0.37 -1.20 16 2 C -0.12 -1.14 5.66 -26.73 -0.15 -1.30 16 3 C 0.07 0.89 3.40 -25.70 -0.09 0.81 16 4 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 5 C -0.15 -1.48 6.57 -24.48 -0.16 -1.64 16 6 C -0.14 -1.75 6.53 -24.78 -0.16 -1.91 16 7 C 0.09 1.47 4.06 -27.16 -0.11 1.36 16 8 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 9 C 0.44 9.43 7.11 36.01 0.26 9.69 16 10 O -0.50 -12.35 15.74 -25.40 -0.40 -12.75 16 11 O -0.35 -8.24 9.85 -41.28 -0.41 -8.65 16 12 C 0.30 7.99 2.42 -29.03 -0.07 7.92 16 13 H 0.08 2.21 7.15 -51.93 -0.37 1.84 16 14 C -0.53 -14.63 8.89 -34.44 -0.31 -14.93 16 15 H 0.08 2.08 7.81 -52.49 -0.41 1.67 16 16 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 17 N -0.87 -24.07 10.92 55.43 0.61 -23.47 16 18 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 22 C 0.03 0.67 5.54 -35.62 -0.20 0.47 16 23 C -0.18 -4.53 9.16 -39.70 -0.36 -4.90 16 24 C -0.22 -4.76 10.91 -39.70 -0.43 -5.19 16 25 C -0.09 -1.86 12.09 29.41 0.36 -1.50 16 26 O -0.18 -4.42 10.65 4.47 0.05 -4.37 16 27 O -0.35 -5.59 10.01 -54.93 -0.55 -6.14 16 28 H 0.06 0.79 7.99 -51.93 -0.42 0.38 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.68 8.06 -51.93 -0.42 0.26 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.18 7.84 -51.93 -0.41 0.77 16 37 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.14 3.67 7.85 -52.49 -0.41 3.25 16 39 H 0.13 2.42 8.06 -52.49 -0.42 1.99 16 40 H 0.18 2.92 8.06 -52.49 -0.42 2.49 16 LS Contribution 341.79 15.07 5.15 5.15 Total: -1.00 -32.35 341.79 -7.53 -39.87 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.80 Total: 5.11 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -1.16 Total: -10.54 kcal Atomic # 7 Polarization: -24.07 SS G_CDS: 0.61 Total: -23.47 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -1.31 Total: -31.91 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.35 -7.53 -39.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311743.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.282 kcal (2) G-P(sol) polarization free energy of solvation -32.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds