Wall clock time and date at job start Tue Mar 31 2020 06:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09004 * 110.27519 * 307.09584 * 3 2 1 5 5 C 1.54947 * 110.31514 * 185.00257 * 3 2 1 6 6 C 1.55310 * 100.94349 * 204.64433 * 5 3 2 7 7 C 1.54383 * 102.25119 * 34.12903 * 6 5 3 8 8 H 1.09001 * 109.83070 * 98.16199 * 7 6 5 9 9 C 1.50705 * 109.82778 * 219.13130 * 7 6 5 10 10 O 1.20823 * 119.99804 * 115.00457 * 9 7 6 11 11 O 1.34229 * 119.99755 * 295.00162 * 9 7 6 12 12 C 1.45199 * 116.99782 * 180.02562 * 11 9 7 13 13 H 1.08998 * 109.47182 * 329.99873 * 12 11 9 14 14 C 1.50703 * 109.47170 * 209.99973 * 12 11 9 15 15 H 1.07997 * 120.00062 * 0.02562 * 14 12 11 16 16 C 1.37877 * 119.99967 * 179.97438 * 14 12 11 17 17 N 1.31515 * 119.99911 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99983 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46993 * 90.00341 * 18 16 14 20 20 H 1.48500 * 109.47207 * 210.00506 * 18 16 14 21 21 H 1.48498 * 109.47077 * 330.00490 * 18 16 14 22 22 C 1.50704 * 109.47307 * 89.99868 * 12 11 9 23 23 C 1.34510 * 125.79052 * 219.71303 * 22 12 11 24 24 C 1.41386 * 106.83918 * 179.88770 * 23 22 12 25 25 C 1.34508 * 106.84072 * 0.37965 * 24 23 22 26 26 O 1.34303 * 125.78594 * 40.02656 * 22 12 11 27 27 O 1.43236 * 107.59267 * 338.64401 * 7 6 5 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 33 33 H 1.09002 * 111.12228 * 322.56051 * 5 3 2 34 34 H 1.08996 * 111.12524 * 86.71798 * 5 3 2 35 35 H 1.08997 * 110.84670 * 152.32061 * 6 5 3 36 36 H 1.09000 * 110.84461 * 275.93800 * 6 5 3 37 37 H 0.97006 * 119.99633 * 180.02562 * 17 16 14 38 38 H 1.07998 * 126.57938 * 0.03214 * 23 22 12 39 39 H 1.07997 * 126.57416 * 180.12214 * 24 23 22 40 40 H 1.08000 * 125.79122 * 179.74792 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5845 2.0042 -0.8156 5 6 3.5841 1.4671 -0.1267 6 6 3.9116 2.8385 0.5246 7 6 2.8320 2.9456 1.6229 8 1 3.2492 2.6403 2.5825 9 6 2.3302 4.3641 1.7099 10 8 1.1824 4.6170 1.4299 11 8 3.1585 5.3463 2.0985 12 6 2.6068 6.6880 2.1598 13 1 1.8167 6.7903 1.4160 14 6 3.6949 7.6919 1.8781 15 1 4.7004 7.3552 1.6730 16 6 3.4066 9.0401 1.8811 17 7 2.1821 9.4501 2.1304 18 14 4.7551 10.2845 1.5311 19 1 4.8139 10.5535 0.0719 20 1 4.4636 11.5474 2.2560 21 1 6.0599 9.7418 1.9873 22 6 2.0387 6.9352 3.5336 23 6 0.8980 7.5939 3.8062 24 6 0.7478 7.5882 5.2121 25 6 1.8099 6.9337 5.7148 26 8 2.5884 6.5404 4.6936 27 8 1.7570 2.0714 1.2601 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 4.0372 0.6485 0.4325 34 1 3.8929 1.4447 -1.1718 35 1 4.9101 2.8319 0.9614 36 1 3.8093 3.6463 -0.2001 37 1 1.9792 10.3987 2.1321 38 1 0.2249 8.0395 3.0888 39 1 -0.0621 8.0288 5.7745 40 1 2.0039 6.7549 6.7621 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350311743.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:35 Heat of formation + Delta-G solvation = -143.041126 kcal Electronic energy + Delta-G solvation = -24183.953250 eV Core-core repulsion = 20543.731326 eV Total energy + Delta-G solvation = -3640.221924 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.20888 -41.70868 -40.14979 -37.51353 -35.33206 -34.62498 -33.57892 -33.25789 -31.68022 -29.89461 -28.56104 -25.90288 -24.70181 -22.92613 -22.58477 -22.27704 -21.58941 -21.01371 -19.24852 -18.71527 -18.35731 -17.61516 -17.35355 -17.18605 -16.70782 -16.42141 -16.24653 -15.09661 -14.92518 -14.77704 -14.39632 -14.23911 -14.05949 -13.78985 -13.58618 -13.51202 -13.30033 -13.06181 -12.97514 -12.83925 -12.79278 -12.44818 -12.22798 -12.08365 -12.05492 -11.76604 -11.54685 -11.44302 -11.37689 -10.82176 -10.62460 -10.54799 -9.14763 -8.25668 -6.54948 1.05416 1.17657 1.38339 1.41984 1.51920 1.68636 2.05106 2.35257 2.38908 2.79683 2.99811 3.39871 3.65691 3.74152 3.91867 4.08653 4.17643 4.21842 4.33289 4.36820 4.44697 4.51951 4.53974 4.62827 4.79096 4.86658 4.95988 5.00279 5.07699 5.11791 5.14222 5.26768 5.28949 5.38286 5.42473 5.43505 5.64405 5.78158 5.88009 5.91415 6.46310 6.55064 6.86716 7.17070 8.71784 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.017824 B = 0.004585 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.531999 B = 6104.977100 C = 7023.208018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C 0.058 3.942 4 H 0.056 0.944 5 C -0.133 4.133 6 C -0.139 4.139 7 C 0.096 3.904 8 H 0.139 0.861 9 C 0.430 3.570 10 O -0.543 6.543 11 O -0.350 6.350 12 C 0.301 3.699 13 H 0.037 0.963 14 C -0.555 4.555 15 H 0.078 0.922 16 C 0.023 3.977 17 N -0.893 5.893 18 Si 0.983 3.017 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.262 1.262 22 C -0.006 4.006 23 C -0.195 4.195 24 C -0.228 4.228 25 C -0.068 4.068 26 O -0.193 6.193 27 O -0.371 6.371 28 H 0.034 0.966 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.123 0.877 36 H 0.066 0.934 37 H 0.270 0.730 38 H 0.120 0.880 39 H 0.166 0.834 40 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.636 -15.696 -1.372 16.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.148 4.148 3 C 0.001 3.999 4 H 0.074 0.926 5 C -0.170 4.170 6 C -0.177 4.177 7 C 0.037 3.963 8 H 0.156 0.844 9 C 0.274 3.726 10 O -0.433 6.433 11 O -0.266 6.266 12 C 0.247 3.753 13 H 0.054 0.946 14 C -0.592 4.592 15 H 0.096 0.904 16 C -0.180 4.180 17 N -0.528 5.528 18 Si 0.806 3.194 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.186 1.186 22 C -0.056 4.056 23 C -0.214 4.214 24 C -0.247 4.247 25 C -0.135 4.135 26 O -0.091 6.091 27 O -0.290 6.290 28 H 0.054 0.946 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.141 0.859 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.138 0.862 39 H 0.184 0.816 40 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 3.245 -15.613 -1.300 15.999 hybrid contribution -0.383 1.713 -0.182 1.765 sum 2.862 -13.899 -1.481 14.268 Atomic orbital electron populations 1.21758 0.96230 1.02090 1.01100 1.21656 0.96061 0.92819 1.04300 1.23483 0.96505 0.94935 0.84947 0.92627 1.23363 0.93373 0.96320 1.03950 1.23123 0.99121 0.99383 0.96038 1.22428 0.88277 0.81813 1.03778 0.84363 1.25234 0.84444 0.90430 0.72493 1.90588 1.21167 1.84719 1.46836 1.86524 1.43836 1.18835 1.77448 1.18749 0.94847 0.75837 0.85864 0.94570 1.21149 0.95835 0.90424 1.51796 0.90384 1.25879 0.98787 0.99841 0.93501 1.70186 1.20418 1.16526 1.45632 0.85174 0.78453 0.77051 0.78732 1.19068 1.20437 1.18613 1.23334 0.93410 1.01821 0.87042 1.21295 0.98986 1.04798 0.96361 1.22044 1.02369 1.06555 0.93752 1.24711 0.91946 1.03246 0.93578 1.83954 1.46798 1.63468 1.14840 1.88527 1.43242 1.57762 1.39475 0.94631 0.90867 0.93207 0.90347 0.87699 0.87207 0.87117 0.85895 0.91527 0.92051 0.86191 0.81633 0.74166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.85 71.98 0.71 -2.39 16 2 C -0.11 -1.91 5.66 30.59 0.17 -1.74 16 3 C 0.06 1.35 3.40 31.26 0.11 1.46 16 4 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 5 C -0.13 -2.20 6.57 32.05 0.21 -1.99 16 6 C -0.14 -3.28 6.53 31.86 0.21 -3.07 16 7 C 0.10 3.07 4.06 30.32 0.12 3.20 16 8 H 0.14 3.74 8.14 -2.39 -0.02 3.72 16 9 C 0.43 19.48 7.11 71.24 0.51 19.99 16 10 O -0.54 -28.93 15.74 28.34 0.45 -28.48 16 11 O -0.35 -17.44 9.85 -49.47 -0.49 -17.93 16 12 C 0.30 17.07 2.42 29.10 0.07 17.14 16 13 H 0.04 2.30 7.15 -2.39 -0.02 2.28 16 14 C -0.56 -31.71 8.89 25.60 0.23 -31.48 16 15 H 0.08 4.30 7.81 -2.91 -0.02 4.28 16 16 C 0.02 1.27 5.30 84.65 0.45 1.72 16 17 N -0.89 -51.30 10.92 21.45 0.23 -51.07 16 18 Si 0.98 42.92 29.54 68.60 2.03 44.95 16 19 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 20 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 22 C -0.01 -0.30 5.54 24.83 0.14 -0.17 16 23 C -0.19 -10.29 9.16 22.19 0.20 -10.08 16 24 C -0.23 -9.76 10.91 22.19 0.24 -9.51 16 25 C -0.07 -2.73 12.09 66.97 0.81 -1.92 16 26 O -0.19 -9.66 10.65 -1.34 -0.01 -9.67 16 27 O -0.37 -12.08 10.01 -130.14 -1.30 -13.38 16 28 H 0.03 0.90 7.99 -2.39 -0.02 0.88 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.11 1.30 8.06 -2.39 -0.02 1.28 16 34 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.07 1.83 7.84 -2.39 -0.02 1.81 16 37 H 0.27 14.62 8.31 -92.70 -0.77 13.85 16 38 H 0.12 6.70 7.85 -2.91 -0.02 6.68 16 39 H 0.17 5.74 8.06 -2.91 -0.02 5.72 16 40 H 0.24 6.48 8.06 -2.91 -0.02 6.46 16 Total: -1.00 -75.92 341.79 6.11 -69.81 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 1.03 Total: 24.61 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: 4.18 Total: -18.84 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.23 Total: -51.07 kcal Atomic # 8 Polarization: -68.10 SS G_CDS: -1.36 Total: -69.46 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -75.92 6.11 -69.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311743.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.230 kcal (2) G-P(sol) polarization free energy of solvation -75.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds