Wall clock time and date at job start Tue Mar 31 2020 06:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47311 * 2 1 4 4 H 1.08994 * 110.35231 * 304.31365 * 3 2 1 5 5 C 1.54944 * 110.31101 * 182.16631 * 3 2 1 6 6 C 1.55309 * 100.94264 * 204.64479 * 5 3 2 7 7 C 1.54378 * 102.25014 * 34.13276 * 6 5 3 8 8 H 1.09000 * 109.82904 * 98.16453 * 7 6 5 9 9 C 1.50706 * 109.82734 * 219.12999 * 7 6 5 10 10 O 1.20824 * 119.99643 * 114.59125 * 9 7 6 11 11 O 1.34230 * 120.00300 * 294.59082 * 9 7 6 12 12 C 1.45193 * 117.00113 * 180.02562 * 11 9 7 13 13 H 1.09005 * 109.47203 * 329.99371 * 12 11 9 14 14 C 1.50700 * 109.47679 * 89.99675 * 12 11 9 15 15 H 1.07994 * 120.00076 * 240.00005 * 14 12 11 16 16 C 1.37878 * 119.99428 * 59.99858 * 14 12 11 17 17 N 1.31515 * 120.00417 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99542 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47110 * 90.00279 * 18 16 14 20 20 H 1.48508 * 109.47096 * 209.99997 * 18 16 14 21 21 H 1.48494 * 109.47376 * 330.00092 * 18 16 14 22 22 C 1.50699 * 109.47179 * 210.00034 * 12 11 9 23 23 C 1.34515 * 125.79196 * 144.99351 * 22 12 11 24 24 C 1.41391 * 106.83828 * 180.02562 * 23 22 12 25 25 C 1.34510 * 106.83995 * 359.97438 * 24 23 22 26 26 O 1.34299 * 108.42518 * 359.74284 * 25 24 23 27 27 O 1.43236 * 107.59193 * 338.64269 * 7 6 5 28 28 H 1.08999 * 109.47627 * 59.99632 * 1 2 3 29 29 H 1.08997 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47384 * 299.99694 * 1 2 3 31 31 H 1.09008 * 109.47327 * 240.00321 * 2 1 3 32 32 H 1.08999 * 109.47627 * 120.00368 * 2 1 3 33 33 H 1.09000 * 111.12659 * 322.56247 * 5 3 2 34 34 H 1.09000 * 111.12286 * 86.72151 * 5 3 2 35 35 H 1.08997 * 110.85030 * 152.32660 * 6 5 3 36 36 H 1.09007 * 110.84002 * 275.94609 * 6 5 3 37 37 H 0.97000 * 119.99604 * 180.02562 * 17 16 14 38 38 H 1.07992 * 126.57968 * 0.04456 * 23 22 12 39 39 H 1.08000 * 126.57756 * 180.02562 * 24 23 22 40 40 H 1.08008 * 125.78505 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6232 1.9919 -0.8441 5 6 3.5883 1.4655 -0.0549 6 6 3.8856 2.8476 0.5882 7 6 2.7561 2.9724 1.6331 8 1 3.1280 2.6831 2.6160 9 6 2.2514 4.3919 1.6733 10 8 1.1204 4.6408 1.3288 11 8 3.0584 5.3796 2.0916 12 6 2.5052 6.7219 2.1046 13 1 1.7559 6.8137 1.3182 14 6 1.8647 6.9885 3.4423 15 1 0.8127 7.2261 3.4996 16 6 2.6218 6.9292 4.5931 17 7 3.9029 6.6404 4.5233 18 14 1.8277 7.2589 6.2515 19 1 1.3173 5.9847 6.8181 20 1 2.8336 7.8433 7.1746 21 1 0.7010 8.2109 6.0803 22 6 3.6074 7.7218 1.8672 23 6 3.4899 8.8750 1.1847 24 6 4.7598 9.4963 1.2086 25 6 5.5771 8.6859 1.9047 26 8 4.8723 7.6155 2.3063 27 8 1.6988 2.0919 1.2350 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 4.0145 0.6564 0.5382 34 1 3.9455 1.4260 -1.0840 35 1 4.8627 2.8486 1.0711 36 1 3.8174 3.6433 -0.1537 37 1 4.4354 6.5983 5.3330 38 1 2.5970 9.2537 0.7099 39 1 5.0228 10.4408 0.7557 40 1 6.6217 8.8676 2.1102 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350311744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:39 Heat of formation + Delta-G solvation = -119.689282 kcal Electronic energy + Delta-G solvation = -24353.953706 eV Core-core repulsion = 20714.744393 eV Total energy + Delta-G solvation = -3639.209313 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.32020 -40.00827 -38.42774 -35.33333 -33.57957 -32.96316 -32.02527 -31.83822 -29.94736 -28.59347 -26.50242 -24.47302 -23.02676 -21.76743 -21.16268 -20.63633 -19.68151 -19.40530 -17.43288 -16.78573 -16.53014 -16.07412 -15.80247 -15.28836 -14.93152 -14.44573 -14.23347 -13.94357 -13.66607 -13.33904 -13.18388 -12.85063 -12.55325 -12.17163 -11.79537 -11.75079 -11.73469 -11.55452 -11.42408 -11.28017 -11.04897 -10.98047 -10.93403 -10.77331 -10.60422 -10.35684 -9.89414 -9.82352 -9.15340 -8.97139 -8.82061 -8.72977 -7.34839 -6.22339 -4.43766 2.89432 3.17106 3.22834 3.27651 3.32421 3.46293 3.68274 4.13896 4.25074 4.27068 4.54672 4.66652 5.03775 5.11069 5.12077 5.18399 5.24600 5.41962 5.54022 5.69679 5.72692 5.80305 5.87580 5.89759 5.90656 5.96777 6.01837 6.11371 6.23016 6.34419 6.37427 6.47446 6.80231 6.88415 7.13217 7.20817 7.47861 7.63017 7.78158 7.82259 8.40645 8.60098 9.00765 9.30012 10.76841 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.016201 B = 0.005033 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.861713 B = 5562.044657 C = 6551.210798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.074 3.926 4 H 0.071 0.929 5 C -0.152 4.152 6 C -0.138 4.138 7 C 0.090 3.910 8 H 0.113 0.887 9 C 0.446 3.554 10 O -0.515 6.515 11 O -0.333 6.333 12 C 0.279 3.721 13 H 0.070 0.930 14 C -0.548 4.548 15 H 0.074 0.926 16 C 0.081 3.919 17 N -0.827 5.827 18 Si 0.897 3.103 19 H -0.275 1.275 20 H -0.282 1.282 21 H -0.269 1.269 22 C 0.082 3.918 23 C -0.265 4.265 24 C -0.221 4.221 25 C -0.082 4.082 26 O -0.116 6.116 27 O -0.347 6.347 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.267 0.733 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.133 -8.579 -8.002 12.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C 0.017 3.983 4 H 0.089 0.911 5 C -0.189 4.189 6 C -0.176 4.176 7 C 0.031 3.969 8 H 0.131 0.869 9 C 0.288 3.712 10 O -0.405 6.405 11 O -0.249 6.249 12 C 0.227 3.773 13 H 0.088 0.912 14 C -0.584 4.584 15 H 0.092 0.908 16 C -0.130 4.130 17 N -0.460 5.460 18 Si 0.724 3.276 19 H -0.201 1.201 20 H -0.208 1.208 21 H -0.194 1.194 22 C 0.029 3.971 23 C -0.284 4.284 24 C -0.240 4.240 25 C -0.152 4.152 26 O -0.008 6.008 27 O -0.265 6.265 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.922 -8.750 -7.708 12.022 hybrid contribution -0.237 0.797 0.870 1.204 sum 2.685 -7.953 -6.838 10.827 Atomic orbital electron populations 1.21720 0.95235 1.01140 1.02753 1.21632 0.96971 0.94588 1.02355 1.23109 0.93698 0.93625 0.87880 0.91113 1.23350 0.95889 0.97575 1.02101 1.23003 0.99049 0.97607 0.97907 1.22193 0.87319 0.86517 1.00883 0.86907 1.23476 0.84891 0.88625 0.74250 1.90549 1.20031 1.84359 1.45525 1.86714 1.44987 1.18483 1.74704 1.18780 0.86026 0.74348 0.98166 0.91231 1.21263 0.96395 1.50974 0.89731 0.90775 1.25158 0.94763 0.93241 0.99841 1.70049 1.05278 1.41684 1.29009 0.86495 0.79424 0.78901 0.82802 1.20106 1.20785 1.19380 1.22812 0.83441 0.97684 0.93174 1.21168 0.98816 0.98123 1.10317 1.21493 0.94112 1.01717 1.06707 1.23786 0.97922 0.90009 1.03434 1.84417 1.19958 1.38376 1.58061 1.88526 1.41552 1.57159 1.39312 0.92863 0.93059 0.91660 0.90936 0.91216 0.89994 0.89763 0.88594 0.90089 0.92287 0.84952 0.85167 0.80029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.83 37.15 0.37 -1.32 16 2 C -0.12 -1.26 5.68 -26.73 -0.15 -1.41 16 3 C 0.07 0.98 3.43 -25.70 -0.09 0.90 16 4 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 5 C -0.15 -1.67 6.57 -24.48 -0.16 -1.83 16 6 C -0.14 -1.93 6.53 -24.78 -0.16 -2.09 16 7 C 0.09 1.62 4.06 -27.16 -0.11 1.51 16 8 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 9 C 0.45 10.29 7.11 36.01 0.26 10.54 16 10 O -0.51 -13.22 15.74 -25.40 -0.40 -13.62 16 11 O -0.33 -8.41 9.25 -42.01 -0.39 -8.80 16 12 C 0.28 7.30 2.58 -29.04 -0.07 7.23 16 13 H 0.07 1.80 7.16 -51.93 -0.37 1.43 16 14 C -0.55 -15.28 8.91 -34.44 -0.31 -15.59 16 15 H 0.07 2.07 7.81 -52.49 -0.41 1.66 16 16 C 0.08 2.19 5.24 -17.82 -0.09 2.10 16 17 N -0.83 -22.75 10.62 55.43 0.59 -22.16 16 18 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 C 0.08 2.05 5.59 -35.62 -0.20 1.86 16 23 C -0.26 -5.89 10.81 -39.70 -0.43 -6.32 16 24 C -0.22 -4.36 10.91 -39.70 -0.43 -4.79 16 25 C -0.08 -1.66 12.09 29.41 0.36 -1.31 16 26 O -0.12 -2.87 8.87 2.19 0.02 -2.85 16 27 O -0.35 -6.12 9.90 -54.93 -0.54 -6.67 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.87 7.91 -51.93 -0.41 0.46 16 31 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.08 1.19 7.84 -51.93 -0.41 0.78 16 37 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.13 2.68 8.06 -52.49 -0.42 2.26 16 39 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 40 H 0.18 2.87 8.06 -52.48 -0.42 2.44 16 LS Contribution 340.95 15.07 5.14 5.14 Total: -1.00 -32.17 340.95 -7.64 -39.81 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.80 Total: 3.64 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -1.23 Total: -10.53 kcal Atomic # 7 Polarization: -22.75 SS G_CDS: 0.59 Total: -22.16 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -1.31 Total: -31.93 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.17 -7.64 -39.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.876 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds