Wall clock time and date at job start Tue Mar 31 2020 06:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47311 * 2 1 4 4 H 1.08994 * 110.35231 * 304.31365 * 3 2 1 5 5 C 1.54944 * 110.31101 * 182.16631 * 3 2 1 6 6 C 1.55309 * 100.94264 * 204.64479 * 5 3 2 7 7 C 1.54378 * 102.25014 * 34.13276 * 6 5 3 8 8 H 1.09000 * 109.82904 * 98.16453 * 7 6 5 9 9 C 1.50706 * 109.82734 * 219.12999 * 7 6 5 10 10 O 1.20824 * 119.99643 * 114.59125 * 9 7 6 11 11 O 1.34230 * 120.00300 * 294.59082 * 9 7 6 12 12 C 1.45193 * 117.00113 * 180.02562 * 11 9 7 13 13 H 1.09005 * 109.47203 * 329.99371 * 12 11 9 14 14 C 1.50700 * 109.47679 * 89.99675 * 12 11 9 15 15 H 1.07994 * 120.00076 * 240.00005 * 14 12 11 16 16 C 1.37878 * 119.99428 * 59.99858 * 14 12 11 17 17 N 1.31515 * 120.00417 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99542 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47110 * 90.00279 * 18 16 14 20 20 H 1.48508 * 109.47096 * 209.99997 * 18 16 14 21 21 H 1.48494 * 109.47376 * 330.00092 * 18 16 14 22 22 C 1.50699 * 109.47179 * 210.00034 * 12 11 9 23 23 C 1.34515 * 125.79196 * 144.99351 * 22 12 11 24 24 C 1.41391 * 106.83828 * 180.02562 * 23 22 12 25 25 C 1.34510 * 106.83995 * 359.97438 * 24 23 22 26 26 O 1.34299 * 108.42518 * 359.74284 * 25 24 23 27 27 O 1.43236 * 107.59193 * 338.64269 * 7 6 5 28 28 H 1.08999 * 109.47627 * 59.99632 * 1 2 3 29 29 H 1.08997 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47384 * 299.99694 * 1 2 3 31 31 H 1.09008 * 109.47327 * 240.00321 * 2 1 3 32 32 H 1.08999 * 109.47627 * 120.00368 * 2 1 3 33 33 H 1.09000 * 111.12659 * 322.56247 * 5 3 2 34 34 H 1.09000 * 111.12286 * 86.72151 * 5 3 2 35 35 H 1.08997 * 110.85030 * 152.32660 * 6 5 3 36 36 H 1.09007 * 110.84002 * 275.94609 * 6 5 3 37 37 H 0.97000 * 119.99604 * 180.02562 * 17 16 14 38 38 H 1.07992 * 126.57968 * 0.04456 * 23 22 12 39 39 H 1.08000 * 126.57756 * 180.02562 * 24 23 22 40 40 H 1.08008 * 125.78505 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6232 1.9919 -0.8441 5 6 3.5883 1.4655 -0.0549 6 6 3.8856 2.8476 0.5882 7 6 2.7561 2.9724 1.6331 8 1 3.1280 2.6831 2.6160 9 6 2.2514 4.3919 1.6733 10 8 1.1204 4.6408 1.3288 11 8 3.0584 5.3796 2.0916 12 6 2.5052 6.7219 2.1046 13 1 1.7559 6.8137 1.3182 14 6 1.8647 6.9885 3.4423 15 1 0.8127 7.2261 3.4996 16 6 2.6218 6.9292 4.5931 17 7 3.9029 6.6404 4.5233 18 14 1.8277 7.2589 6.2515 19 1 1.3173 5.9847 6.8181 20 1 2.8336 7.8433 7.1746 21 1 0.7010 8.2109 6.0803 22 6 3.6074 7.7218 1.8672 23 6 3.4899 8.8750 1.1847 24 6 4.7598 9.4963 1.2086 25 6 5.5771 8.6859 1.9047 26 8 4.8723 7.6155 2.3063 27 8 1.6988 2.0919 1.2350 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 4.0145 0.6564 0.5382 34 1 3.9455 1.4260 -1.0840 35 1 4.8627 2.8486 1.0711 36 1 3.8174 3.6433 -0.1537 37 1 4.4354 6.5983 5.3330 38 1 2.5970 9.2537 0.7099 39 1 5.0228 10.4408 0.7557 40 1 6.6217 8.8676 2.1102 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350311744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:38 Heat of formation + Delta-G solvation = -137.847787 kcal Electronic energy + Delta-G solvation = -24354.741118 eV Core-core repulsion = 20714.744393 eV Total energy + Delta-G solvation = -3639.996724 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.05215 -41.53199 -40.01129 -37.26086 -34.99893 -34.58015 -33.57960 -33.21577 -31.74329 -29.83955 -28.37396 -25.88707 -24.73089 -22.86940 -22.50985 -22.13210 -21.27056 -21.13071 -19.18139 -18.45651 -18.27696 -17.56632 -17.16479 -17.02891 -16.80997 -16.26022 -15.91124 -15.26951 -14.94518 -14.68109 -14.30685 -14.25296 -13.87667 -13.73110 -13.55808 -13.38763 -13.08137 -13.06221 -12.94690 -12.82803 -12.78888 -12.42980 -12.24989 -12.01318 -11.87867 -11.75520 -11.54050 -11.36728 -11.05600 -10.85666 -10.52344 -10.49432 -9.09234 -8.25541 -6.56149 1.16172 1.34053 1.37120 1.40953 1.46511 1.83266 2.03251 2.31206 2.57420 2.84190 3.05059 3.43527 3.69472 3.78494 3.94387 4.13377 4.21420 4.29847 4.36234 4.39402 4.45036 4.46375 4.53325 4.64518 4.77985 4.85712 4.95307 5.01172 5.07588 5.12526 5.13494 5.22206 5.29845 5.41676 5.44392 5.54032 5.76224 5.86027 5.93157 5.94065 6.47637 6.70176 7.08931 7.22773 8.72399 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.016201 B = 0.005033 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.861713 B = 5562.044657 C = 6551.210798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C 0.059 3.941 4 H 0.060 0.940 5 C -0.133 4.133 6 C -0.135 4.135 7 C 0.094 3.906 8 H 0.120 0.880 9 C 0.435 3.565 10 O -0.552 6.552 11 O -0.342 6.342 12 C 0.278 3.722 13 H 0.052 0.948 14 C -0.581 4.581 15 H 0.057 0.943 16 C 0.044 3.956 17 N -0.843 5.843 18 Si 0.955 3.045 19 H -0.273 1.273 20 H -0.269 1.269 21 H -0.270 1.270 22 C 0.043 3.957 23 C -0.265 4.265 24 C -0.219 4.219 25 C -0.079 4.079 26 O -0.144 6.144 27 O -0.372 6.372 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.068 0.932 37 H 0.270 0.730 38 H 0.143 0.857 39 H 0.171 0.829 40 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.157 -9.311 -8.411 13.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C 0.002 3.998 4 H 0.078 0.922 5 C -0.170 4.170 6 C -0.172 4.172 7 C 0.034 3.966 8 H 0.138 0.862 9 C 0.279 3.721 10 O -0.444 6.444 11 O -0.257 6.257 12 C 0.226 3.774 13 H 0.070 0.930 14 C -0.616 4.616 15 H 0.075 0.925 16 C -0.165 4.165 17 N -0.476 5.476 18 Si 0.779 3.221 19 H -0.199 1.199 20 H -0.193 1.193 21 H -0.195 1.195 22 C -0.010 4.010 23 C -0.285 4.285 24 C -0.237 4.237 25 C -0.147 4.147 26 O -0.037 6.037 27 O -0.291 6.291 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.160 0.840 39 H 0.188 0.812 40 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 4.956 -9.492 -8.132 13.446 hybrid contribution -0.877 1.045 0.888 1.628 sum 4.079 -8.448 -7.244 11.852 Atomic orbital electron populations 1.21734 0.96111 1.02041 1.01155 1.21660 0.96199 0.92858 1.04164 1.23466 0.95815 0.94681 0.85798 0.92249 1.23357 0.93739 0.95967 1.03945 1.23045 0.98108 0.99354 0.96713 1.22304 0.88511 0.83001 1.02774 0.86210 1.24717 0.84337 0.90262 0.72750 1.90509 1.21592 1.85147 1.47181 1.86691 1.45300 1.18659 1.75052 1.18592 0.86847 0.75121 0.96890 0.92993 1.21385 0.95999 1.52791 0.91472 0.92513 1.25775 0.95303 0.92874 1.02547 1.70138 1.05919 1.41718 1.29793 0.85611 0.78766 0.78717 0.78996 1.19885 1.19328 1.19484 1.22618 0.83925 0.98532 0.95941 1.21549 1.00501 0.97353 1.09077 1.21896 0.92462 1.02979 1.06409 1.24743 0.99548 0.88413 1.02032 1.84349 1.20014 1.40389 1.58917 1.88521 1.42285 1.56989 1.41340 0.93023 0.90892 0.94727 0.87610 0.90702 0.87708 0.86843 0.86907 0.91346 0.92025 0.83952 0.81199 0.75669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.83 71.98 0.71 -2.59 16 2 C -0.11 -2.13 5.68 30.59 0.17 -1.95 16 3 C 0.06 1.50 3.43 31.26 0.11 1.61 16 4 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 5 C -0.13 -2.54 6.57 32.05 0.21 -2.33 16 6 C -0.13 -3.64 6.53 31.86 0.21 -3.43 16 7 C 0.09 3.42 4.06 30.32 0.12 3.54 16 8 H 0.12 4.17 8.14 -2.39 -0.02 4.15 16 9 C 0.44 21.13 7.11 71.24 0.51 21.64 16 10 O -0.55 -30.24 15.74 28.33 0.45 -29.79 16 11 O -0.34 -18.06 9.25 -48.79 -0.45 -18.51 16 12 C 0.28 15.34 2.58 29.10 0.07 15.42 16 13 H 0.05 2.92 7.16 -2.38 -0.02 2.90 16 14 C -0.58 -33.91 8.91 25.60 0.23 -33.68 16 15 H 0.06 3.37 7.81 -2.91 -0.02 3.35 16 16 C 0.04 2.43 5.24 84.65 0.44 2.88 16 17 N -0.84 -46.91 10.62 21.45 0.23 -46.69 16 18 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 22 C 0.04 2.17 5.59 24.83 0.14 2.31 16 23 C -0.27 -11.79 10.81 22.19 0.24 -11.55 16 24 C -0.22 -8.10 10.91 22.19 0.24 -7.86 16 25 C -0.08 -3.03 12.09 66.97 0.81 -2.22 16 26 O -0.14 -7.07 8.87 0.82 0.01 -7.06 16 27 O -0.37 -13.36 9.90 -130.15 -1.29 -14.65 16 28 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.03 0.94 7.91 -2.39 -0.02 0.92 16 31 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.10 1.59 8.06 -2.39 -0.02 1.57 16 34 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.07 2.01 7.84 -2.38 -0.02 1.99 16 37 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 38 H 0.14 5.83 8.06 -2.91 -0.02 5.80 16 39 H 0.17 4.83 8.06 -2.91 -0.02 4.81 16 40 H 0.23 6.24 8.06 -2.91 -0.02 6.22 16 Total: -1.00 -73.65 340.95 6.21 -67.45 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 1.03 Total: 21.67 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 4.21 Total: -18.22 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.23 Total: -46.69 kcal Atomic # 8 Polarization: -68.73 SS G_CDS: -1.29 Total: -70.02 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -73.65 6.21 -67.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.403 kcal (2) G-P(sol) polarization free energy of solvation -73.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds