Wall clock time and date at job start Tue Mar 31 2020 07:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 110.55370 * 2 1 4 4 C 1.54997 * 110.61469 * 237.12549 * 2 1 3 5 5 C 1.54808 * 102.09326 * 204.47790 * 4 2 1 6 6 H 1.09001 * 110.48715 * 262.20279 * 5 4 2 7 7 C 1.52998 * 110.49202 * 139.55925 * 5 4 2 8 8 C 1.54105 * 104.18785 * 20.87942 * 5 4 2 9 9 H 1.08997 * 109.87730 * 242.46122 * 8 5 4 10 10 C 1.50694 * 109.87762 * 121.45482 * 8 5 4 11 11 O 1.20825 * 120.00248 * 245.30560 * 10 8 5 12 12 O 1.34231 * 119.99908 * 65.31152 * 10 8 5 13 13 C 1.45195 * 116.99917 * 179.97438 * 12 10 8 14 14 H 1.08996 * 109.47322 * 329.99399 * 13 12 10 15 15 C 1.50700 * 109.47211 * 209.99625 * 13 12 10 16 16 H 1.08000 * 120.00479 * 265.22138 * 15 13 12 17 17 C 1.37880 * 119.99944 * 85.21714 * 15 13 12 18 18 N 1.31509 * 120.00082 * 353.94855 * 17 15 13 19 19 Si 1.86803 * 119.99983 * 173.95546 * 17 15 13 20 20 H 1.48503 * 109.47112 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.46889 * 299.99747 * 19 17 15 22 22 H 1.48500 * 109.47315 * 60.00169 * 19 17 15 23 23 C 1.50702 * 109.47442 * 89.99849 * 13 12 10 24 24 C 1.34513 * 125.78928 * 218.62798 * 23 13 12 25 25 C 1.41383 * 106.84091 * 179.97438 * 24 23 13 26 26 C 1.34516 * 106.83717 * 359.97438 * 25 24 23 27 27 O 1.34298 * 125.78740 * 38.31507 * 23 13 12 28 28 O 1.43741 * 107.41796 * 1.95616 * 8 5 4 29 29 H 1.08994 * 109.47228 * 182.87266 * 1 2 3 30 30 H 1.08997 * 109.46602 * 302.87428 * 1 2 3 31 31 H 1.09001 * 109.47170 * 62.87193 * 1 2 3 32 32 H 1.08997 * 110.90987 * 86.27816 * 4 2 1 33 33 H 1.09001 * 110.91195 * 322.67417 * 4 2 1 34 34 H 1.09000 * 109.46628 * 305.23066 * 7 5 4 35 35 H 1.08990 * 109.47567 * 65.23016 * 7 5 4 36 36 H 1.08998 * 109.47059 * 185.23319 * 7 5 4 37 37 H 0.97001 * 120.00191 * 354.47481 * 18 17 15 38 38 H 1.08006 * 126.57814 * 0.03336 * 24 23 13 39 39 H 1.08004 * 126.58084 * 180.02562 * 25 24 23 40 40 H 1.07999 * 125.78315 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0205 0.0000 4 6 2.0758 -0.7875 -1.2184 5 6 3.4794 -1.2157 -0.7255 6 1 4.2406 -0.5316 -1.1007 7 6 3.7854 -2.6502 -1.1609 8 6 3.3839 -1.1268 0.8100 9 1 4.0872 -0.3821 1.1825 10 6 3.6888 -2.4702 1.4209 11 8 2.8286 -3.0702 2.0209 12 8 4.9160 -3.0002 1.2987 13 6 5.1381 -4.2970 1.9128 14 1 4.4932 -4.4011 2.7853 15 6 6.5796 -4.4116 2.3371 16 1 7.2993 -4.8817 1.6833 17 6 6.9797 -3.9161 3.5600 18 7 6.1328 -3.2391 4.3042 19 14 8.7249 -4.2063 4.1596 20 1 8.9016 -3.5762 5.4926 21 1 8.9759 -5.6661 4.2645 22 1 9.6848 -3.6067 3.1982 23 6 4.8189 -5.3845 0.9196 24 6 4.2087 -6.5503 1.1986 25 6 4.1116 -7.2634 -0.0183 26 6 4.6678 -6.4904 -0.9683 27 8 5.0902 -5.3516 -0.3953 28 8 2.0397 -0.7355 1.1356 29 1 -0.3633 -1.0263 0.0515 30 1 -0.3632 0.5578 0.8631 31 1 -0.3633 0.4686 -0.9146 32 1 2.1509 -0.1444 -2.0952 33 1 1.4549 -1.6584 -1.4285 34 1 2.9904 -3.3117 -0.8166 35 1 3.8492 -2.6941 -2.2481 36 1 4.7344 -2.9666 -0.7281 37 1 5.2530 -3.0192 3.9600 38 1 3.8590 -6.8783 2.1665 39 1 3.6740 -8.2409 -0.1585 40 1 4.7561 -6.7414 -2.0150 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520425379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:47 Heat of formation + Delta-G solvation = -145.025748 kcal Electronic energy + Delta-G solvation = -25048.101224 eV Core-core repulsion = 21407.793239 eV Total energy + Delta-G solvation = -3640.307984 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.47531 -41.89069 -40.15300 -37.55794 -35.51563 -34.63553 -33.90976 -33.21372 -31.87746 -28.64137 -27.95569 -27.81357 -25.19258 -23.13637 -22.63780 -22.31336 -21.59227 -20.93885 -19.61606 -18.72850 -18.61139 -17.85516 -17.44092 -16.88522 -16.80284 -16.20203 -15.73039 -15.63625 -15.37324 -14.87445 -14.81576 -14.18062 -13.90720 -13.74932 -13.69333 -13.51877 -13.44999 -13.28323 -13.07187 -12.89244 -12.61934 -12.36065 -12.28030 -11.95614 -11.92186 -11.85661 -11.59571 -11.44465 -11.09983 -10.88377 -10.82122 -10.71036 -9.43969 -8.94139 -6.82239 0.80136 1.20663 1.46266 1.51887 1.67523 1.78713 1.81213 2.15222 2.44764 2.81931 3.02141 3.30234 3.59531 3.63848 3.80228 4.03888 4.09410 4.11957 4.16863 4.23926 4.30294 4.33086 4.40406 4.51781 4.66403 4.72288 4.81774 4.86321 4.93966 4.94573 4.98781 5.11434 5.14728 5.22455 5.30314 5.38797 5.57789 5.71361 5.77730 5.87288 6.13526 6.26690 6.88951 7.04340 8.35371 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.006143 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.715261 B = 4556.697308 C = 5770.280889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.056 3.944 3 H 0.099 0.901 4 C -0.135 4.135 5 C -0.105 4.105 6 H 0.127 0.873 7 C -0.152 4.152 8 C 0.082 3.918 9 H 0.112 0.888 10 C 0.449 3.551 11 O -0.552 6.552 12 O -0.354 6.354 13 C 0.268 3.732 14 H 0.038 0.962 15 C -0.597 4.597 16 H 0.066 0.934 17 C -0.011 4.011 18 N -0.897 5.897 19 Si 1.127 2.873 20 H -0.277 1.277 21 H -0.263 1.263 22 H -0.260 1.260 23 C -0.008 4.008 24 C -0.241 4.241 25 C -0.215 4.215 26 C -0.053 4.053 27 O -0.178 6.178 28 O -0.382 6.382 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.126 0.874 33 H 0.069 0.931 34 H 0.020 0.980 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.255 0.745 38 H 0.133 0.867 39 H 0.178 0.822 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.007 3.972 -14.960 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.000 4.000 3 H 0.117 0.883 4 C -0.172 4.172 5 C -0.123 4.123 6 H 0.145 0.855 7 C -0.209 4.209 8 C 0.023 3.977 9 H 0.129 0.871 10 C 0.293 3.707 11 O -0.443 6.443 12 O -0.271 6.271 13 C 0.216 3.784 14 H 0.056 0.944 15 C -0.632 4.632 16 H 0.084 0.916 17 C -0.214 4.214 18 N -0.531 5.531 19 Si 0.944 3.056 20 H -0.201 1.201 21 H -0.188 1.188 22 H -0.184 1.184 23 C -0.058 4.058 24 C -0.260 4.260 25 C -0.234 4.234 26 C -0.120 4.120 27 O -0.074 6.074 28 O -0.302 6.302 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.125 0.875 32 H 0.145 0.855 33 H 0.088 0.912 34 H 0.039 0.961 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.151 0.849 39 H 0.195 0.805 40 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -4.246 4.176 -13.465 14.723 hybrid contribution -1.473 -0.738 -0.534 1.732 sum -5.719 3.438 -13.999 15.508 Atomic orbital electron populations 1.21803 0.91755 1.02390 1.04011 1.23677 0.96537 0.96034 0.83787 0.88290 1.23325 0.93500 1.01104 0.99291 1.22542 1.00849 0.99455 0.89473 0.85461 1.22057 1.01436 0.94362 1.03069 1.22557 0.87215 0.90365 0.97553 0.87076 1.24239 0.81306 0.88669 0.76440 1.90542 1.48768 1.63733 1.41234 1.87050 1.31174 1.38289 1.70603 1.18987 0.97330 0.75057 0.86980 0.94411 1.22178 0.93017 1.42322 1.05679 0.91552 1.27910 1.09402 0.90886 0.93198 1.70914 1.07735 1.34945 1.39462 0.82866 0.68298 0.77924 0.76512 1.20146 1.18816 1.18400 1.22958 1.01124 0.99245 0.82521 1.21705 1.07195 0.96205 1.00944 1.22045 1.07010 1.03118 0.91209 1.24939 1.01592 0.84544 1.00915 1.84042 1.64445 1.38712 1.20187 1.89026 1.26340 1.73910 1.40937 0.93557 0.91954 0.87525 0.85542 0.91188 0.96071 0.89074 0.91855 0.93481 0.84903 0.80464 0.73574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.66 71.98 0.70 -2.18 16 2 C 0.06 1.33 3.97 31.28 0.12 1.46 16 3 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 4 C -0.13 -2.85 6.14 31.89 0.20 -2.66 16 5 C -0.10 -2.89 3.64 -9.80 -0.04 -2.92 16 6 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 7 C -0.15 -4.92 7.62 71.98 0.55 -4.37 16 8 C 0.08 3.07 3.95 30.22 0.12 3.19 16 9 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 10 C 0.45 22.11 5.58 71.23 0.40 22.51 16 11 O -0.55 -31.24 15.75 28.31 0.45 -30.79 16 12 O -0.35 -18.55 7.60 -49.22 -0.37 -18.93 16 13 C 0.27 15.01 1.88 29.10 0.05 15.07 16 14 H 0.04 2.40 6.14 -2.39 -0.01 2.39 16 15 C -0.60 -34.24 8.68 25.60 0.22 -34.02 16 16 H 0.07 3.74 7.81 -2.91 -0.02 3.71 16 17 C -0.01 -0.64 5.45 84.66 0.46 -0.18 16 18 N -0.90 -55.10 13.56 21.45 0.29 -54.81 16 19 Si 1.13 48.09 29.91 68.60 2.05 50.14 16 20 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 22 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 23 C -0.01 -0.38 6.16 24.83 0.15 -0.22 16 24 C -0.24 -10.79 10.80 22.19 0.24 -10.55 16 25 C -0.22 -7.36 10.91 22.19 0.24 -7.12 16 26 C -0.05 -1.71 12.09 66.97 0.81 -0.90 16 27 O -0.18 -7.57 9.22 -0.53 0.00 -7.58 16 28 O -0.38 -14.21 10.46 -130.22 -1.36 -15.57 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.07 1.64 7.76 -2.39 -0.02 1.62 16 34 H 0.02 0.78 7.58 -2.39 -0.02 0.76 16 35 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.06 2.47 4.72 -2.39 -0.01 2.46 16 37 H 0.26 16.51 6.95 -92.71 -0.64 15.87 16 38 H 0.13 5.93 8.06 -2.91 -0.02 5.91 16 39 H 0.18 4.57 8.06 -2.91 -0.02 4.54 16 40 H 0.25 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -79.11 334.61 6.44 -72.67 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 1.17 Total: 27.76 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 4.23 Total: -22.89 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.29 Total: -54.81 kcal Atomic # 8 Polarization: -71.57 SS G_CDS: -1.30 Total: -72.87 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.05 Total: 50.14 kcal Total: -79.11 6.44 -72.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520425379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.355 kcal (2) G-P(sol) polarization free energy of solvation -79.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds