Wall clock time and date at job start Tue Mar 31 2020 07:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.48321 * 2 1 4 4 C 1.53090 * 109.48312 * 239.95983 * 2 1 3 5 5 C 1.53182 * 109.16379 * 297.62767 * 4 2 1 6 6 H 1.08998 * 109.53927 * 62.97445 * 5 4 2 7 7 C 1.50696 * 109.54166 * 183.15104 * 5 4 2 8 8 O 1.20825 * 120.00589 * 0.02562 * 7 5 4 9 9 O 1.34230 * 120.00010 * 180.02562 * 7 5 4 10 10 C 1.45204 * 117.00230 * 179.97438 * 9 7 5 11 11 H 1.09001 * 109.46752 * 30.00406 * 10 9 7 12 12 C 1.50703 * 109.46996 * 150.00044 * 10 9 7 13 13 H 1.08001 * 119.99870 * 95.08121 * 12 10 9 14 14 C 1.37873 * 120.00039 * 275.08139 * 12 10 9 15 15 N 1.31515 * 120.00138 * 185.18840 * 14 12 10 16 16 Si 1.86805 * 119.99938 * 5.19379 * 14 12 10 17 17 H 1.48498 * 109.47280 * 84.98990 * 16 14 12 18 18 H 1.48506 * 109.47001 * 204.98632 * 16 14 12 19 19 H 1.48495 * 109.46992 * 324.98411 * 16 14 12 20 20 C 1.50698 * 109.47430 * 270.00186 * 10 9 7 21 21 C 1.34511 * 125.79013 * 143.25420 * 20 10 9 22 22 C 1.41381 * 106.84220 * 180.02562 * 21 20 10 23 23 C 1.34517 * 106.84218 * 0.02562 * 22 21 20 24 24 O 1.34301 * 125.78898 * 322.95331 * 20 10 9 25 25 C 1.53172 * 109.04723 * 303.02463 * 5 4 2 26 26 C 1.53093 * 109.16452 * 56.96083 * 25 5 4 27 27 O 1.42905 * 109.42430 * 302.41101 * 26 25 5 28 28 H 1.08993 * 109.47232 * 299.98034 * 1 2 3 29 29 H 1.08999 * 109.46792 * 59.98170 * 1 2 3 30 30 H 1.09007 * 109.46980 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.52073 * 57.53523 * 4 2 1 32 32 H 1.09001 * 109.52712 * 177.72199 * 4 2 1 33 33 H 0.96999 * 120.00512 * 179.97438 * 15 14 12 34 34 H 1.07997 * 126.57805 * 0.04660 * 21 20 10 35 35 H 1.08002 * 126.58118 * 180.02562 * 22 21 20 36 36 H 1.07994 * 125.79328 * 180.02562 * 23 22 21 37 37 H 1.09000 * 109.51542 * 297.06437 * 25 5 4 38 38 H 1.08993 * 109.53748 * 176.87539 * 25 5 4 39 39 H 1.08994 * 109.48549 * 182.42005 * 26 25 5 40 40 H 1.09006 * 109.47824 * 62.39877 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7225 -1.2494 5 6 1.5758 -2.1816 -1.2117 6 1 0.4868 -2.2182 -1.2420 7 6 2.1382 -2.9206 -2.3985 8 8 2.8397 -2.3416 -3.1938 9 8 1.8600 -4.2222 -2.5721 10 6 2.4353 -4.8696 -3.7375 11 1 3.3816 -4.3907 -3.9890 12 6 2.6742 -6.3267 -3.4360 13 1 1.9350 -7.0638 -3.7130 14 6 3.8365 -6.7189 -2.8065 15 7 4.0921 -7.9975 -2.6347 16 14 5.0480 -5.4341 -2.1973 17 1 4.6407 -4.9707 -0.8466 18 1 6.4070 -6.0289 -2.1277 19 1 5.0596 -4.2815 -3.1335 20 6 1.4852 -4.7466 -4.9008 21 6 1.8353 -4.5590 -6.1859 22 6 0.6363 -4.5012 -6.9329 23 6 -0.3749 -4.6563 -6.0594 24 8 0.1456 -4.8114 -4.8310 25 6 2.0762 -2.8324 0.0814 26 6 1.5645 -2.0283 1.2794 27 8 2.0066 -0.6741 1.1666 28 1 -0.3633 0.5135 0.8901 29 1 -0.3633 0.5141 -0.8898 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6422 -0.2361 -2.1398 32 1 3.1298 -0.6877 -1.2708 33 1 4.9100 -8.2734 -2.1922 34 1 2.8396 -4.4700 -6.5730 35 1 0.5489 -4.3596 -8.0000 36 1 -1.4265 -4.6615 -6.3050 37 1 3.1661 -2.8404 0.0869 38 1 1.7033 -3.8548 0.1429 39 1 1.9529 -2.4619 2.2009 40 1 0.4749 -2.0548 1.2963 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526992083.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:26 Heat of formation + Delta-G solvation = -125.935437 kcal Electronic energy + Delta-G solvation = -24674.160614 eV Core-core repulsion = 21034.680448 eV Total energy + Delta-G solvation = -3639.480166 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.86818 -40.33295 -38.94858 -35.84820 -33.72462 -33.11489 -32.32282 -32.24000 -30.50956 -28.30489 -27.18350 -25.18167 -23.26998 -22.87079 -21.19920 -20.71097 -19.57351 -19.13173 -17.63001 -17.23952 -16.81120 -16.35686 -15.92159 -15.80743 -15.16488 -14.88404 -14.64069 -14.54107 -13.82986 -13.64595 -13.41930 -13.01930 -12.77025 -12.44848 -12.28894 -12.15059 -12.13991 -11.81659 -11.81162 -11.50557 -11.24584 -11.17044 -11.01913 -10.71025 -10.20169 -10.13632 -9.90971 -9.75348 -9.69971 -9.45483 -9.27220 -8.98586 -7.77768 -6.52518 -4.62217 2.39851 2.85918 3.07283 3.16231 3.22623 3.24687 3.51428 3.73432 3.83405 4.08500 4.60538 4.78902 4.80975 4.87871 4.99988 5.10298 5.23806 5.32802 5.34379 5.40873 5.52351 5.59811 5.64118 5.70060 5.78929 5.85813 5.92980 6.01452 6.09428 6.20500 6.25459 6.32299 6.40793 6.54207 6.71387 7.06519 7.10760 7.17415 7.41376 7.85557 8.03217 8.56284 8.60379 9.03516 10.55893 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.013342 B = 0.006495 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.129565 B = 4309.949066 C = 5738.437829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.088 3.912 3 H 0.105 0.895 4 C -0.134 4.134 5 C -0.088 4.088 6 H 0.105 0.895 7 C 0.450 3.550 8 O -0.524 6.524 9 O -0.352 6.352 10 C 0.245 3.755 11 H 0.087 0.913 12 C -0.505 4.505 13 H 0.090 0.910 14 C 0.094 3.906 15 N -0.858 5.858 16 Si 0.863 3.137 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.253 1.253 20 C 0.032 3.968 21 C -0.227 4.227 22 C -0.210 4.210 23 C -0.072 4.072 24 O -0.168 6.168 25 C -0.150 4.150 26 C 0.061 3.939 27 O -0.379 6.379 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.276 0.724 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.193 0.807 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.777 12.295 3.349 14.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.030 3.970 3 H 0.122 0.878 4 C -0.171 4.171 5 C -0.108 4.108 6 H 0.123 0.877 7 C 0.293 3.707 8 O -0.414 6.414 9 O -0.269 6.269 10 C 0.194 3.806 11 H 0.104 0.896 12 C -0.540 4.540 13 H 0.108 0.892 14 C -0.115 4.115 15 N -0.493 5.493 16 Si 0.688 3.312 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.177 1.177 20 C -0.019 4.019 21 C -0.246 4.246 22 C -0.230 4.230 23 C -0.139 4.139 24 O -0.064 6.064 25 C -0.187 4.187 26 C -0.016 4.016 27 O -0.298 6.298 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.210 0.790 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.482 12.297 3.550 14.347 hybrid contribution 0.529 0.276 -0.400 0.718 sum -5.952 12.573 3.151 14.263 Atomic orbital electron populations 1.22489 0.96402 1.03012 1.02717 1.22193 0.93457 0.96417 0.84909 0.87768 1.22095 1.02933 0.93510 0.98593 1.21145 1.02133 0.94751 0.92740 0.87715 1.23591 0.78166 0.83026 0.85939 1.90573 1.36396 1.68869 1.45560 1.87140 1.69097 1.21475 1.49167 1.19872 0.89104 0.94079 0.77579 0.89590 1.20815 1.05262 0.87644 1.40280 0.89186 1.25066 0.97478 0.95567 0.93405 1.69856 1.25863 1.14836 1.38707 0.87034 0.80647 0.82433 0.81127 1.18814 1.20231 1.17695 1.23231 0.80604 1.00435 0.97644 1.21394 0.99516 1.11087 0.92605 1.21678 0.92493 1.08658 1.00122 1.23838 0.99096 1.08630 0.82354 1.84070 1.20972 1.70007 1.31334 1.22198 1.02614 1.00924 0.93009 1.22605 0.98898 0.81934 0.98147 1.87973 1.73832 1.24882 1.43070 0.91792 0.91336 0.91649 0.90125 0.90114 0.91401 0.83973 0.84170 0.78972 0.90648 0.88847 0.88469 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.82 8.65 37.16 0.32 -1.50 16 2 C 0.09 1.01 3.91 -26.68 -0.10 0.91 16 3 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 4 C -0.13 -1.87 4.24 -26.59 -0.11 -1.98 16 5 C -0.09 -1.40 2.41 -91.59 -0.22 -1.62 16 6 H 0.10 1.47 6.62 -51.93 -0.34 1.13 16 7 C 0.45 9.45 7.22 36.00 0.26 9.71 16 8 O -0.52 -12.09 15.19 -18.75 -0.28 -12.37 16 9 O -0.35 -8.30 9.41 -41.76 -0.39 -8.70 16 10 C 0.24 6.15 1.74 -29.03 -0.05 6.10 16 11 H 0.09 2.23 4.75 -51.93 -0.25 1.99 16 12 C -0.50 -14.02 9.23 -34.44 -0.32 -14.34 16 13 H 0.09 2.71 8.05 -52.49 -0.42 2.29 16 14 C 0.09 2.59 5.47 -17.82 -0.10 2.49 16 15 N -0.86 -24.46 13.96 55.43 0.77 -23.69 16 16 Si 0.86 20.79 27.35 -169.99 -4.65 16.14 16 17 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.25 -6.16 6.13 56.52 0.35 -5.81 16 20 C 0.03 0.75 6.16 -35.63 -0.22 0.53 16 21 C -0.23 -4.78 10.81 -39.70 -0.43 -5.21 16 22 C -0.21 -3.73 10.91 -39.70 -0.43 -4.16 16 23 C -0.07 -1.25 12.09 29.42 0.36 -0.89 16 24 O -0.17 -3.68 10.65 3.09 0.03 -3.65 16 25 C -0.15 -2.24 5.36 -26.59 -0.14 -2.39 16 26 C 0.06 0.73 6.51 37.21 0.24 0.97 16 27 O -0.38 -4.99 10.60 -35.23 -0.37 -5.36 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.65 4.98 -51.93 -0.26 0.39 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.08 1.25 8.02 -51.93 -0.42 0.83 16 33 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.14 2.80 8.06 -52.49 -0.42 2.38 16 35 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 36 H 0.19 2.39 8.06 -52.49 -0.42 1.97 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.60 6.34 -51.93 -0.33 0.27 16 LS Contribution 330.44 15.07 4.98 4.98 Total: -1.00 -31.60 330.44 -6.30 -37.89 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -5.44 Total: 6.12 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -0.95 Total: -11.38 kcal Atomic # 7 Polarization: -24.46 SS G_CDS: 0.77 Total: -23.69 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -1.02 Total: -30.07 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.65 Total: 16.14 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.60 -6.30 -37.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526992083.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.042 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds