Wall clock time and date at job start Tue Mar 31 2020 07:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.48321 * 2 1 4 4 C 1.53090 * 109.48312 * 239.95983 * 2 1 3 5 5 C 1.53182 * 109.16379 * 297.62767 * 4 2 1 6 6 H 1.08998 * 109.53927 * 62.97445 * 5 4 2 7 7 C 1.50696 * 109.54166 * 183.15104 * 5 4 2 8 8 O 1.20825 * 120.00589 * 0.02562 * 7 5 4 9 9 O 1.34230 * 120.00010 * 180.02562 * 7 5 4 10 10 C 1.45204 * 117.00230 * 179.97438 * 9 7 5 11 11 H 1.09001 * 109.46752 * 30.00406 * 10 9 7 12 12 C 1.50703 * 109.46996 * 150.00044 * 10 9 7 13 13 H 1.08001 * 119.99870 * 95.08121 * 12 10 9 14 14 C 1.37873 * 120.00039 * 275.08139 * 12 10 9 15 15 N 1.31515 * 120.00138 * 185.18840 * 14 12 10 16 16 Si 1.86805 * 119.99938 * 5.19379 * 14 12 10 17 17 H 1.48498 * 109.47280 * 84.98990 * 16 14 12 18 18 H 1.48506 * 109.47001 * 204.98632 * 16 14 12 19 19 H 1.48495 * 109.46992 * 324.98411 * 16 14 12 20 20 C 1.50698 * 109.47430 * 270.00186 * 10 9 7 21 21 C 1.34511 * 125.79013 * 143.25420 * 20 10 9 22 22 C 1.41381 * 106.84220 * 180.02562 * 21 20 10 23 23 C 1.34517 * 106.84218 * 0.02562 * 22 21 20 24 24 O 1.34301 * 125.78898 * 322.95331 * 20 10 9 25 25 C 1.53172 * 109.04723 * 303.02463 * 5 4 2 26 26 C 1.53093 * 109.16452 * 56.96083 * 25 5 4 27 27 O 1.42905 * 109.42430 * 302.41101 * 26 25 5 28 28 H 1.08993 * 109.47232 * 299.98034 * 1 2 3 29 29 H 1.08999 * 109.46792 * 59.98170 * 1 2 3 30 30 H 1.09007 * 109.46980 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.52073 * 57.53523 * 4 2 1 32 32 H 1.09001 * 109.52712 * 177.72199 * 4 2 1 33 33 H 0.96999 * 120.00512 * 179.97438 * 15 14 12 34 34 H 1.07997 * 126.57805 * 0.04660 * 21 20 10 35 35 H 1.08002 * 126.58118 * 180.02562 * 22 21 20 36 36 H 1.07994 * 125.79328 * 180.02562 * 23 22 21 37 37 H 1.09000 * 109.51542 * 297.06437 * 25 5 4 38 38 H 1.08993 * 109.53748 * 176.87539 * 25 5 4 39 39 H 1.08994 * 109.48549 * 182.42005 * 26 25 5 40 40 H 1.09006 * 109.47824 * 62.39877 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7225 -1.2494 5 6 1.5758 -2.1816 -1.2117 6 1 0.4868 -2.2182 -1.2420 7 6 2.1382 -2.9206 -2.3985 8 8 2.8397 -2.3416 -3.1938 9 8 1.8600 -4.2222 -2.5721 10 6 2.4353 -4.8696 -3.7375 11 1 3.3816 -4.3907 -3.9890 12 6 2.6742 -6.3267 -3.4360 13 1 1.9350 -7.0638 -3.7130 14 6 3.8365 -6.7189 -2.8065 15 7 4.0921 -7.9975 -2.6347 16 14 5.0480 -5.4341 -2.1973 17 1 4.6407 -4.9707 -0.8466 18 1 6.4070 -6.0289 -2.1277 19 1 5.0596 -4.2815 -3.1335 20 6 1.4852 -4.7466 -4.9008 21 6 1.8353 -4.5590 -6.1859 22 6 0.6363 -4.5012 -6.9329 23 6 -0.3749 -4.6563 -6.0594 24 8 0.1456 -4.8114 -4.8310 25 6 2.0762 -2.8324 0.0814 26 6 1.5645 -2.0283 1.2794 27 8 2.0066 -0.6741 1.1666 28 1 -0.3633 0.5135 0.8901 29 1 -0.3633 0.5141 -0.8898 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6422 -0.2361 -2.1398 32 1 3.1298 -0.6877 -1.2708 33 1 4.9100 -8.2734 -2.1922 34 1 2.8396 -4.4700 -6.5730 35 1 0.5489 -4.3596 -8.0000 36 1 -1.4265 -4.6615 -6.3050 37 1 3.1661 -2.8404 0.0869 38 1 1.7033 -3.8548 0.1429 39 1 1.9529 -2.4619 2.2009 40 1 0.4749 -2.0548 1.2963 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526992083.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:26 Heat of formation + Delta-G solvation = -145.564576 kcal Electronic energy + Delta-G solvation = -24675.011797 eV Core-core repulsion = 21034.680448 eV Total energy + Delta-G solvation = -3640.331349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.45306 -41.76869 -40.29106 -37.64835 -35.26306 -34.85525 -33.93317 -33.22767 -32.26420 -29.30037 -28.93040 -26.50156 -24.68793 -24.31813 -22.72847 -22.21164 -21.18643 -20.29614 -19.59033 -18.86703 -18.40512 -17.83844 -17.31771 -16.93704 -16.79316 -16.44240 -16.36794 -15.55748 -15.22825 -15.12246 -14.77417 -14.64642 -14.14251 -13.90887 -13.73510 -13.71539 -13.44501 -13.35154 -13.13694 -12.93434 -12.79238 -12.49203 -12.20498 -12.07006 -11.94741 -11.75459 -11.62583 -11.51319 -11.17346 -11.05417 -10.82122 -10.51821 -9.37101 -8.65090 -6.80013 0.81489 1.14740 1.15609 1.20891 1.27381 1.66863 1.87482 2.05007 2.21005 2.83357 2.92256 3.46717 3.62023 3.66570 3.86425 3.94084 4.09155 4.10553 4.15781 4.22658 4.29535 4.37723 4.40219 4.51339 4.61174 4.67127 4.85051 4.88977 4.96331 4.98763 5.02243 5.03374 5.06408 5.15625 5.18860 5.35006 5.59466 5.68434 5.95393 6.24293 6.27084 6.32373 6.84358 6.89329 8.48348 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.013342 B = 0.006495 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.129565 B = 4309.949066 C = 5738.437829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.090 3.910 3 H 0.123 0.877 4 C -0.130 4.130 5 C -0.082 4.082 6 H 0.129 0.871 7 C 0.442 3.558 8 O -0.548 6.548 9 O -0.362 6.362 10 C 0.255 3.745 11 H 0.071 0.929 12 C -0.520 4.520 13 H 0.052 0.948 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.913 3.087 17 H -0.253 1.253 18 H -0.259 1.259 19 H -0.262 1.262 20 C -0.018 4.018 21 C -0.230 4.230 22 C -0.215 4.215 23 C -0.055 4.055 24 O -0.190 6.190 25 C -0.151 4.151 26 C 0.066 3.934 27 O -0.391 6.391 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.283 0.717 34 H 0.146 0.854 35 H 0.181 0.819 36 H 0.247 0.753 37 H 0.054 0.946 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.395 14.529 3.628 17.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.033 3.967 3 H 0.141 0.859 4 C -0.168 4.168 5 C -0.101 4.101 6 H 0.147 0.853 7 C 0.287 3.713 8 O -0.439 6.439 9 O -0.279 6.279 10 C 0.203 3.797 11 H 0.089 0.911 12 C -0.556 4.556 13 H 0.070 0.930 14 C -0.149 4.149 15 N -0.533 5.533 16 Si 0.735 3.265 17 H -0.177 1.177 18 H -0.183 1.183 19 H -0.187 1.187 20 C -0.068 4.068 21 C -0.250 4.250 22 C -0.233 4.233 23 C -0.122 4.122 24 O -0.086 6.086 25 C -0.189 4.189 26 C -0.010 4.010 27 O -0.310 6.310 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.164 0.836 35 H 0.198 0.802 36 H 0.263 0.737 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.131 0.869 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.099 14.533 3.840 17.075 hybrid contribution 0.911 -0.376 -0.612 1.160 sum -7.189 14.157 3.228 16.202 Atomic orbital electron populations 1.22469 0.94530 1.03240 1.04045 1.22320 0.94899 0.96599 0.82907 0.85907 1.22123 1.01722 0.92398 1.00547 1.21314 1.03229 0.95141 0.90454 0.85330 1.24613 0.77630 0.81993 0.87046 1.90549 1.37554 1.68964 1.46839 1.87016 1.69072 1.23311 1.48494 1.19377 0.89628 0.92271 0.78430 0.91122 1.20797 1.04891 0.88814 1.41102 0.93018 1.25673 0.98816 0.97129 0.93323 1.69927 1.26974 1.16286 1.40147 0.86255 0.79532 0.79932 0.80739 1.17692 1.18316 1.18662 1.22968 0.81494 1.04591 0.97790 1.21771 1.01197 1.09547 0.92454 1.22103 0.90758 1.08423 1.02056 1.24969 1.01391 1.05275 0.80543 1.84028 1.20242 1.70588 1.33772 1.22241 1.01354 1.01281 0.94016 1.22671 1.00194 0.81106 0.97050 1.87970 1.74398 1.25146 1.43485 0.90386 0.90174 0.91918 0.89648 0.92218 0.90731 0.83643 0.80178 0.73713 0.92763 0.89548 0.86866 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.91 8.65 71.98 0.62 -2.28 16 2 C 0.09 1.82 3.91 30.62 0.12 1.94 16 3 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 4 C -0.13 -3.46 4.24 30.69 0.13 -3.33 16 5 C -0.08 -2.54 2.41 -11.42 -0.03 -2.57 16 6 H 0.13 3.35 6.62 -2.39 -0.02 3.34 16 7 C 0.44 18.80 7.22 71.23 0.51 19.31 16 8 O -0.55 -25.74 15.19 21.97 0.33 -25.40 16 9 O -0.36 -17.56 9.41 -49.03 -0.46 -18.02 16 10 C 0.25 13.32 1.74 29.10 0.05 13.37 16 11 H 0.07 3.84 4.75 -2.39 -0.01 3.83 16 12 C -0.52 -30.45 9.23 25.60 0.24 -30.21 16 13 H 0.05 3.33 8.05 -2.91 -0.02 3.31 16 14 C 0.06 3.22 5.47 84.65 0.46 3.68 16 15 N -0.90 -52.98 13.96 21.45 0.30 -52.68 16 16 Si 0.91 44.05 27.35 68.60 1.88 45.92 16 17 H -0.25 -11.63 7.11 99.48 0.71 -10.93 16 18 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 19 H -0.26 -12.92 6.13 99.48 0.61 -12.31 16 20 C -0.02 -0.86 6.16 24.83 0.15 -0.71 16 21 C -0.23 -9.71 10.81 22.19 0.24 -9.47 16 22 C -0.21 -7.08 10.91 22.19 0.24 -6.84 16 23 C -0.06 -1.78 12.09 66.97 0.81 -0.97 16 24 O -0.19 -8.25 10.65 -0.03 0.00 -8.25 16 25 C -0.15 -4.40 5.36 30.68 0.16 -4.23 16 26 C 0.07 1.43 6.51 72.01 0.47 1.90 16 27 O -0.39 -9.26 10.60 -148.98 -1.58 -10.84 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.02 4.98 -2.38 -0.01 1.00 16 31 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.06 1.83 8.02 -2.39 -0.02 1.81 16 33 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 34 H 0.15 5.83 8.06 -2.91 -0.02 5.80 16 35 H 0.18 4.37 8.06 -2.91 -0.02 4.34 16 36 H 0.25 4.88 8.06 -2.91 -0.02 4.86 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.09 2.61 8.14 -2.39 -0.02 2.60 16 39 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.08 1.39 6.34 -2.38 -0.02 1.37 16 Total: -1.00 -72.57 330.44 5.61 -66.97 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.95 Total: 22.71 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: 4.19 Total: -20.41 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.30 Total: -52.68 kcal Atomic # 8 Polarization: -60.81 SS G_CDS: -1.71 Total: -62.52 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.92 kcal Total: -72.57 5.61 -66.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526992083.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.599 kcal (2) G-P(sol) polarization free energy of solvation -72.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds