Wall clock time and date at job start Tue Mar 31 2020 07:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.48102 * 2 1 4 4 C 1.53098 * 109.47696 * 239.98077 * 2 1 3 5 5 C 1.53181 * 109.16302 * 297.62643 * 4 2 1 6 6 H 1.09003 * 109.54069 * 62.97817 * 5 4 2 7 7 C 1.50697 * 109.54104 * 183.15285 * 5 4 2 8 8 O 1.20828 * 120.00362 * 359.82149 * 7 5 4 9 9 O 1.34234 * 119.99884 * 179.82736 * 7 5 4 10 10 C 1.45199 * 116.99992 * 180.02562 * 9 7 5 11 11 H 1.09002 * 109.47043 * 29.99583 * 10 9 7 12 12 C 1.50704 * 109.47281 * 269.99685 * 10 9 7 13 13 H 1.07997 * 120.00030 * 125.08667 * 12 10 9 14 14 C 1.37873 * 119.99544 * 305.09015 * 12 10 9 15 15 N 1.31512 * 120.00462 * 7.33465 * 14 12 10 16 16 Si 1.86798 * 119.99737 * 187.32359 * 14 12 10 17 17 H 1.48502 * 109.46935 * 84.99808 * 16 14 12 18 18 H 1.48502 * 109.47261 * 204.99533 * 16 14 12 19 19 H 1.48500 * 109.47349 * 324.99860 * 16 14 12 20 20 C 1.50701 * 109.47152 * 149.99464 * 10 9 7 21 21 C 1.34510 * 125.78874 * 213.32359 * 20 10 9 22 22 C 1.41388 * 106.83920 * 179.89055 * 21 20 10 23 23 C 1.34508 * 106.84011 * 0.37271 * 22 21 20 24 24 O 1.34302 * 125.78663 * 33.63184 * 20 10 9 25 25 C 1.53171 * 109.11040 * 303.06391 * 5 4 2 26 26 C 1.53108 * 109.15918 * 56.84916 * 25 5 4 27 27 O 1.42898 * 109.48044 * 120.04219 * 2 1 3 28 28 H 1.09005 * 109.47667 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47345 * 300.01756 * 1 2 3 30 30 H 1.08997 * 109.47495 * 60.01542 * 1 2 3 31 31 H 1.08997 * 109.52475 * 177.72218 * 4 2 1 32 32 H 1.09006 * 109.57327 * 57.56195 * 4 2 1 33 33 H 0.96995 * 120.00394 * 180.02562 * 15 14 12 34 34 H 1.07996 * 126.58064 * 0.02562 * 21 20 10 35 35 H 1.08005 * 126.57918 * 180.11549 * 22 21 20 36 36 H 1.08001 * 125.79296 * 179.75193 * 23 22 21 37 37 H 1.09005 * 109.52265 * 176.83775 * 25 5 4 38 38 H 1.08995 * 109.52355 * 297.02831 * 25 5 4 39 39 H 1.08990 * 109.48273 * 182.49462 * 26 25 5 40 40 H 1.09004 * 109.41194 * 62.50556 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0405 -0.7221 -1.2498 5 6 1.5756 -2.1812 -1.2126 6 1 0.4866 -2.2177 -1.2428 7 6 2.1379 -2.9198 -2.3996 8 8 2.8363 -2.3396 -3.1968 9 8 1.8629 -4.2224 -2.5715 10 6 2.4388 -4.8696 -3.7367 11 1 3.3836 -4.3885 -3.9897 12 6 1.4872 -4.7504 -4.8992 13 1 1.8231 -4.3172 -5.8298 14 6 0.1879 -5.1943 -4.7748 15 7 -0.2634 -5.5876 -3.6037 16 14 -0.9317 -5.2370 -6.2694 17 1 -0.7195 -6.5061 -7.0108 18 1 -2.3476 -5.1513 -5.8299 19 1 -0.6181 -4.0876 -7.1558 20 6 2.6819 -6.3257 -3.4337 21 6 3.6903 -7.0723 -3.9185 22 6 3.5365 -8.3694 -3.3771 23 6 2.4387 -8.3399 -2.6005 24 8 1.9251 -7.0994 -2.6385 25 6 2.0745 -2.8337 0.0803 26 6 1.5644 -2.0288 1.2787 27 8 2.0065 -0.6744 1.1662 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5141 0.8899 30 1 -0.3634 0.5136 -0.8901 31 1 3.1297 -0.6873 -1.2712 32 1 1.6428 -0.2357 -2.1406 33 1 -1.1774 -5.9003 -3.5163 34 1 4.4692 -6.7435 -4.5904 35 1 4.1754 -9.2215 -3.5564 36 1 2.0379 -9.1724 -2.0414 37 1 1.7003 -3.8557 0.1405 38 1 3.1644 -2.8429 0.0866 39 1 1.9530 -2.4627 2.1999 40 1 0.4749 -2.0552 1.2956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526992086.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:32 Heat of formation + Delta-G solvation = -123.480597 kcal Electronic energy + Delta-G solvation = -24682.798306 eV Core-core repulsion = 21043.424590 eV Total energy + Delta-G solvation = -3639.373716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.42039 -40.09255 -38.64952 -35.49970 -33.51464 -32.89395 -32.08915 -31.93112 -29.91440 -28.14909 -26.60858 -25.02279 -23.18112 -22.99953 -20.85755 -20.20148 -19.50611 -18.93548 -17.25309 -16.70866 -16.60819 -15.96119 -15.65563 -15.41647 -14.93734 -14.55683 -14.46922 -14.27716 -13.89230 -13.47355 -13.13697 -12.79499 -12.55111 -12.23306 -11.93422 -11.84434 -11.70584 -11.65854 -11.42829 -11.24945 -11.03978 -11.02717 -10.96523 -10.53335 -10.36259 -10.03471 -9.85280 -9.64474 -9.27835 -9.05972 -8.91734 -8.71202 -7.42116 -6.24463 -4.44723 2.81492 3.18161 3.24748 3.26533 3.30007 3.51641 3.81279 3.96916 4.15418 4.24150 4.78029 4.95934 5.01648 5.04953 5.13774 5.18660 5.38335 5.47909 5.57587 5.63430 5.73134 5.80018 5.86864 5.92836 5.95168 6.03499 6.14051 6.21091 6.29110 6.41913 6.46354 6.48088 6.73839 6.83968 7.13273 7.28463 7.41245 7.61093 7.77553 7.81455 8.30522 8.57017 9.00855 9.28614 10.75016 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.015405 B = 0.005540 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.105268 B = 5052.655801 C = 6014.764927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.088 3.912 3 H 0.103 0.897 4 C -0.132 4.132 5 C -0.083 4.083 6 H 0.104 0.896 7 C 0.464 3.536 8 O -0.532 6.532 9 O -0.322 6.322 10 C 0.279 3.721 11 H 0.070 0.930 12 C -0.551 4.551 13 H 0.074 0.926 14 C 0.081 3.919 15 N -0.824 5.824 16 Si 0.894 3.106 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.270 1.270 20 C 0.077 3.923 21 C -0.262 4.262 22 C -0.217 4.217 23 C -0.082 4.082 24 O -0.130 6.130 25 C -0.144 4.144 26 C 0.060 3.940 27 O -0.380 6.380 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.266 0.734 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.185 0.815 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.244 3.905 8.328 9.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.031 3.969 3 H 0.121 0.879 4 C -0.169 4.169 5 C -0.102 4.102 6 H 0.122 0.878 7 C 0.307 3.693 8 O -0.424 6.424 9 O -0.237 6.237 10 C 0.227 3.773 11 H 0.088 0.912 12 C -0.587 4.587 13 H 0.092 0.908 14 C -0.129 4.129 15 N -0.456 5.456 16 Si 0.721 3.279 17 H -0.201 1.201 18 H -0.208 1.208 19 H -0.195 1.195 20 C 0.024 3.976 21 C -0.281 4.281 22 C -0.237 4.237 23 C -0.151 4.151 24 O -0.022 6.022 25 C -0.182 4.182 26 C -0.017 4.017 27 O -0.299 6.299 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.201 0.799 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.139 4.122 8.487 9.503 hybrid contribution -0.721 -0.636 -1.431 1.724 sum 0.418 3.485 7.056 7.881 Atomic orbital electron populations 1.22491 0.96438 1.03141 1.02599 1.22190 0.93456 0.96313 0.84976 0.87915 1.22068 1.02654 0.93815 0.98404 1.21013 1.02350 0.94355 0.92497 0.87798 1.23061 0.77756 0.82836 0.85604 1.90535 1.37536 1.68880 1.45415 1.86721 1.67484 1.21727 1.47735 1.18784 0.95246 0.80790 0.82517 0.91246 1.21219 0.95731 1.43687 0.98078 0.90793 1.25136 0.98125 0.93562 0.96118 1.70104 1.16252 1.37194 1.22094 0.86562 0.79480 0.79018 0.82875 1.20059 1.20839 1.19469 1.23035 0.88658 0.94129 0.91796 1.21185 1.03232 0.94267 1.09444 1.21526 1.00588 0.98167 1.03404 1.23793 0.97378 0.88107 1.05839 1.84345 1.46201 1.18190 1.53494 1.22137 1.02103 1.00777 0.93203 1.22594 0.98967 0.82008 0.98085 1.87950 1.73854 1.24884 1.43241 0.91542 0.91983 0.91307 0.90287 0.90121 0.92427 0.84779 0.84981 0.79854 0.89133 0.90923 0.88737 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.10 8.65 37.16 0.32 -1.78 16 2 C 0.09 1.09 3.91 -26.68 -0.10 0.99 16 3 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 4 C -0.13 -1.96 4.24 -26.59 -0.11 -2.08 16 5 C -0.08 -1.41 2.40 -91.59 -0.22 -1.63 16 6 H 0.10 1.74 6.62 -51.93 -0.34 1.40 16 7 C 0.46 10.33 7.23 36.00 0.26 10.59 16 8 O -0.53 -12.90 15.19 -18.75 -0.28 -13.19 16 9 O -0.32 -8.03 8.69 -42.25 -0.37 -8.39 16 10 C 0.28 7.19 2.58 -29.03 -0.07 7.12 16 11 H 0.07 1.77 7.16 -51.93 -0.37 1.40 16 12 C -0.55 -15.09 8.87 -34.44 -0.31 -15.40 16 13 H 0.07 2.02 7.82 -52.49 -0.41 1.61 16 14 C 0.08 2.18 5.23 -17.82 -0.09 2.09 16 15 N -0.82 -22.38 11.20 55.43 0.62 -21.76 16 16 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 C 0.08 1.89 5.74 -35.63 -0.20 1.68 16 21 C -0.26 -5.72 10.81 -39.70 -0.43 -6.15 16 22 C -0.22 -4.20 10.91 -39.70 -0.43 -4.63 16 23 C -0.08 -1.63 12.09 29.41 0.36 -1.28 16 24 O -0.13 -3.15 9.64 1.31 0.01 -3.13 16 25 C -0.14 -2.15 5.36 -26.59 -0.14 -2.29 16 26 C 0.06 0.74 6.51 37.21 0.24 0.99 16 27 O -0.38 -5.15 10.60 -35.23 -0.37 -5.53 16 28 H 0.07 0.78 4.98 -51.93 -0.26 0.52 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.25 8.03 -51.93 -0.42 0.83 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.13 2.66 8.06 -52.49 -0.42 2.24 16 35 H 0.13 2.09 8.06 -52.48 -0.42 1.67 16 36 H 0.18 2.81 8.06 -52.49 -0.42 2.39 16 37 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.64 6.34 -51.93 -0.33 0.31 16 LS Contribution 331.13 15.07 4.99 4.99 Total: -1.00 -30.94 331.13 -6.86 -37.80 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -5.49 Total: 5.30 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -0.94 Total: -11.78 kcal Atomic # 7 Polarization: -22.38 SS G_CDS: 0.62 Total: -21.76 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -1.01 Total: -30.24 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.94 -6.86 -37.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526992086.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.679 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds