Wall clock time and date at job start Tue Mar 31 2020 07:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.48102 * 2 1 4 4 C 1.53098 * 109.47696 * 239.98077 * 2 1 3 5 5 C 1.53181 * 109.16302 * 297.62643 * 4 2 1 6 6 H 1.09003 * 109.54069 * 62.97817 * 5 4 2 7 7 C 1.50697 * 109.54104 * 183.15285 * 5 4 2 8 8 O 1.20828 * 120.00362 * 359.82149 * 7 5 4 9 9 O 1.34234 * 119.99884 * 179.82736 * 7 5 4 10 10 C 1.45199 * 116.99992 * 180.02562 * 9 7 5 11 11 H 1.09002 * 109.47043 * 29.99583 * 10 9 7 12 12 C 1.50704 * 109.47281 * 269.99685 * 10 9 7 13 13 H 1.07997 * 120.00030 * 125.08667 * 12 10 9 14 14 C 1.37873 * 119.99544 * 305.09015 * 12 10 9 15 15 N 1.31512 * 120.00462 * 7.33465 * 14 12 10 16 16 Si 1.86798 * 119.99737 * 187.32359 * 14 12 10 17 17 H 1.48502 * 109.46935 * 84.99808 * 16 14 12 18 18 H 1.48502 * 109.47261 * 204.99533 * 16 14 12 19 19 H 1.48500 * 109.47349 * 324.99860 * 16 14 12 20 20 C 1.50701 * 109.47152 * 149.99464 * 10 9 7 21 21 C 1.34510 * 125.78874 * 213.32359 * 20 10 9 22 22 C 1.41388 * 106.83920 * 179.89055 * 21 20 10 23 23 C 1.34508 * 106.84011 * 0.37271 * 22 21 20 24 24 O 1.34302 * 125.78663 * 33.63184 * 20 10 9 25 25 C 1.53171 * 109.11040 * 303.06391 * 5 4 2 26 26 C 1.53108 * 109.15918 * 56.84916 * 25 5 4 27 27 O 1.42898 * 109.48044 * 120.04219 * 2 1 3 28 28 H 1.09005 * 109.47667 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47345 * 300.01756 * 1 2 3 30 30 H 1.08997 * 109.47495 * 60.01542 * 1 2 3 31 31 H 1.08997 * 109.52475 * 177.72218 * 4 2 1 32 32 H 1.09006 * 109.57327 * 57.56195 * 4 2 1 33 33 H 0.96995 * 120.00394 * 180.02562 * 15 14 12 34 34 H 1.07996 * 126.58064 * 0.02562 * 21 20 10 35 35 H 1.08005 * 126.57918 * 180.11549 * 22 21 20 36 36 H 1.08001 * 125.79296 * 179.75193 * 23 22 21 37 37 H 1.09005 * 109.52265 * 176.83775 * 25 5 4 38 38 H 1.08995 * 109.52355 * 297.02831 * 25 5 4 39 39 H 1.08990 * 109.48273 * 182.49462 * 26 25 5 40 40 H 1.09004 * 109.41194 * 62.50556 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0405 -0.7221 -1.2498 5 6 1.5756 -2.1812 -1.2126 6 1 0.4866 -2.2177 -1.2428 7 6 2.1379 -2.9198 -2.3996 8 8 2.8363 -2.3396 -3.1968 9 8 1.8629 -4.2224 -2.5715 10 6 2.4388 -4.8696 -3.7367 11 1 3.3836 -4.3885 -3.9897 12 6 1.4872 -4.7504 -4.8992 13 1 1.8231 -4.3172 -5.8298 14 6 0.1879 -5.1943 -4.7748 15 7 -0.2634 -5.5876 -3.6037 16 14 -0.9317 -5.2370 -6.2694 17 1 -0.7195 -6.5061 -7.0108 18 1 -2.3476 -5.1513 -5.8299 19 1 -0.6181 -4.0876 -7.1558 20 6 2.6819 -6.3257 -3.4337 21 6 3.6903 -7.0723 -3.9185 22 6 3.5365 -8.3694 -3.3771 23 6 2.4387 -8.3399 -2.6005 24 8 1.9251 -7.0994 -2.6385 25 6 2.0745 -2.8337 0.0803 26 6 1.5644 -2.0288 1.2787 27 8 2.0065 -0.6744 1.1662 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5141 0.8899 30 1 -0.3634 0.5136 -0.8901 31 1 3.1297 -0.6873 -1.2712 32 1 1.6428 -0.2357 -2.1406 33 1 -1.1774 -5.9003 -3.5163 34 1 4.4692 -6.7435 -4.5904 35 1 4.1754 -9.2215 -3.5564 36 1 2.0379 -9.1724 -2.0414 37 1 1.7003 -3.8557 0.1405 38 1 3.1644 -2.8429 0.0866 39 1 1.9530 -2.4627 2.1999 40 1 0.4749 -2.0552 1.2956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526992086.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:32 Heat of formation + Delta-G solvation = -141.191965 kcal Electronic energy + Delta-G solvation = -24683.566329 eV Core-core repulsion = 21043.424590 eV Total energy + Delta-G solvation = -3640.141739 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.12265 -41.54549 -40.12835 -37.35935 -35.02245 -34.67804 -33.63846 -33.15856 -31.71147 -29.22640 -28.43145 -26.46618 -24.84431 -24.23939 -22.50209 -21.76362 -21.23701 -20.18190 -19.08468 -18.32467 -18.31271 -17.27962 -17.17519 -16.86114 -16.73848 -16.35623 -15.93641 -15.49580 -15.41128 -14.75467 -14.60250 -14.41908 -13.84654 -13.63590 -13.53379 -13.43421 -13.19915 -13.12176 -12.92644 -12.85610 -12.74339 -12.43183 -12.20576 -12.14904 -11.91856 -11.71653 -11.33008 -11.17114 -10.95168 -10.75174 -10.56341 -10.45508 -9.13300 -8.24857 -6.53532 1.11863 1.35471 1.35593 1.44960 1.50309 1.87298 2.18056 2.31407 2.50718 2.93514 3.05630 3.57316 3.72316 3.78123 3.92120 4.13163 4.16881 4.30243 4.35779 4.38989 4.43900 4.46968 4.48561 4.66437 4.68367 4.74379 4.88682 5.00068 5.08603 5.09042 5.11182 5.17136 5.22101 5.36656 5.40077 5.54107 5.76618 5.85324 5.98069 6.27117 6.48308 6.63514 7.11808 7.25712 8.73671 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.015405 B = 0.005540 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.105268 B = 5052.655801 C = 6014.764927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.092 3.908 3 H 0.125 0.875 4 C -0.127 4.127 5 C -0.077 4.077 6 H 0.109 0.891 7 C 0.452 3.548 8 O -0.560 6.560 9 O -0.334 6.334 10 C 0.278 3.722 11 H 0.053 0.947 12 C -0.581 4.581 13 H 0.059 0.941 14 C 0.044 3.956 15 N -0.842 5.842 16 Si 0.953 3.047 17 H -0.271 1.271 18 H -0.271 1.271 19 H -0.272 1.272 20 C 0.036 3.964 21 C -0.262 4.262 22 C -0.215 4.215 23 C -0.080 4.080 24 O -0.158 6.158 25 C -0.139 4.139 26 C 0.065 3.935 27 O -0.388 6.388 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.268 0.732 34 H 0.145 0.855 35 H 0.173 0.827 36 H 0.229 0.771 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.118 0.882 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.471 3.320 9.466 10.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.035 3.965 3 H 0.143 0.857 4 C -0.165 4.165 5 C -0.096 4.096 6 H 0.127 0.873 7 C 0.298 3.702 8 O -0.453 6.453 9 O -0.248 6.248 10 C 0.225 3.775 11 H 0.071 0.929 12 C -0.616 4.616 13 H 0.077 0.923 14 C -0.165 4.165 15 N -0.474 5.474 16 Si 0.777 3.223 17 H -0.197 1.197 18 H -0.196 1.196 19 H -0.197 1.197 20 C -0.016 4.016 21 C -0.281 4.281 22 C -0.234 4.234 23 C -0.147 4.147 24 O -0.052 6.052 25 C -0.177 4.177 26 C -0.011 4.011 27 O -0.307 6.307 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.163 0.837 35 H 0.190 0.810 36 H 0.245 0.755 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.136 0.864 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.372 3.540 9.636 10.273 hybrid contribution -0.382 -0.501 -1.765 1.874 sum -0.010 3.040 7.871 8.438 Atomic orbital electron populations 1.22473 0.95153 1.02955 1.03820 1.22277 0.94428 0.96686 0.83093 0.85750 1.22078 1.01822 0.92556 1.00046 1.21142 1.02275 0.95099 0.91082 0.87318 1.24190 0.77221 0.82161 0.86675 1.90501 1.38872 1.69092 1.46843 1.86706 1.67747 1.23082 1.47305 1.18614 0.94102 0.82048 0.82753 0.92911 1.21350 0.97032 1.45016 0.98245 0.92285 1.25756 0.98973 0.93087 0.98671 1.70192 1.16512 1.37384 1.23346 0.85658 0.78094 0.78838 0.79693 1.19664 1.19609 1.19664 1.22855 0.90539 0.93955 0.94290 1.21574 1.02490 0.95371 1.08675 1.21936 1.00935 0.98074 1.02462 1.24759 0.97183 0.87389 1.05405 1.84282 1.47079 1.19912 1.53951 1.22126 1.01586 1.00723 0.93284 1.22674 0.99800 0.81228 0.97437 1.87952 1.74236 1.25178 1.43323 0.92401 0.90242 0.90651 0.91656 0.90599 0.92249 0.83691 0.80995 0.75507 0.90015 0.91725 0.86396 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.72 8.65 71.98 0.62 -3.09 16 2 C 0.09 2.12 3.91 30.63 0.12 2.24 16 3 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 4 C -0.13 -3.79 4.24 30.69 0.13 -3.66 16 5 C -0.08 -2.67 2.40 -11.42 -0.03 -2.69 16 6 H 0.11 3.67 6.62 -2.39 -0.02 3.66 16 7 C 0.45 21.08 7.23 71.24 0.51 21.59 16 8 O -0.56 -28.65 15.19 21.96 0.33 -28.31 16 9 O -0.33 -17.39 8.69 -48.61 -0.42 -17.81 16 10 C 0.28 15.02 2.58 29.10 0.08 15.09 16 11 H 0.05 2.90 7.16 -2.39 -0.02 2.88 16 12 C -0.58 -33.07 8.87 25.60 0.23 -32.85 16 13 H 0.06 3.40 7.82 -2.91 -0.02 3.38 16 14 C 0.04 2.40 5.23 84.65 0.44 2.84 16 15 N -0.84 -46.35 11.20 21.45 0.24 -46.11 16 16 Si 0.95 42.89 29.54 68.60 2.03 44.92 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 C 0.04 1.80 5.74 24.83 0.14 1.95 16 21 C -0.26 -11.39 10.81 22.19 0.24 -11.15 16 22 C -0.22 -7.80 10.91 22.19 0.24 -7.56 16 23 C -0.08 -2.99 12.09 66.97 0.81 -2.18 16 24 O -0.16 -7.70 9.64 1.65 0.02 -7.68 16 25 C -0.14 -4.14 5.36 30.69 0.16 -3.97 16 26 C 0.06 1.48 6.51 72.02 0.47 1.95 16 27 O -0.39 -9.67 10.60 -148.98 -1.58 -11.24 16 28 H 0.06 1.25 4.98 -2.38 -0.01 1.24 16 29 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 2.11 8.03 -2.39 -0.02 2.09 16 32 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 33 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 34 H 0.15 5.78 8.06 -2.91 -0.02 5.76 16 35 H 0.17 4.74 8.06 -2.91 -0.02 4.72 16 36 H 0.23 6.11 8.06 -2.91 -0.02 6.09 16 37 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 38 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.07 1.43 6.34 -2.38 -0.02 1.42 16 Total: -1.00 -68.84 331.13 5.83 -63.01 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 1.04 Total: 24.73 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: 4.17 Total: -21.49 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.24 Total: -46.11 kcal Atomic # 8 Polarization: -63.40 SS G_CDS: -1.65 Total: -65.05 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -68.84 5.83 -63.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526992086.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.181 kcal (2) G-P(sol) polarization free energy of solvation -68.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds