Wall clock time and date at job start Tue Mar 31 2020 07:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00215 * 2 1 4 4 C 1.52997 * 109.47466 * 124.99708 * 3 2 1 5 5 O 1.42898 * 109.47319 * 180.02562 * 4 3 2 6 6 C 1.42902 * 114.00186 * 180.02562 * 5 4 3 7 7 H 1.08993 * 109.46807 * 29.99983 * 6 5 4 8 8 C 1.53002 * 109.47072 * 269.99829 * 6 5 4 9 9 C 1.50700 * 109.47036 * 149.99828 * 6 5 4 10 10 O 1.20826 * 120.00480 * 4.99839 * 9 6 5 11 11 O 1.34229 * 119.99890 * 184.99942 * 9 6 5 12 12 C 1.45194 * 117.00055 * 179.97438 * 11 9 6 13 13 H 1.09000 * 109.47257 * 329.99875 * 12 11 9 14 14 C 1.50700 * 109.47286 * 210.00160 * 12 11 9 15 15 H 1.08004 * 120.00028 * 359.97438 * 14 12 11 16 16 C 1.37877 * 120.00215 * 179.97438 * 14 12 11 17 17 N 1.31516 * 119.99923 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99918 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47048 * 60.00750 * 18 16 14 20 20 H 1.48502 * 109.47042 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47517 * 300.00275 * 18 16 14 22 22 C 1.50701 * 109.47100 * 90.00504 * 12 11 9 23 23 C 1.34511 * 125.78611 * 219.71902 * 22 12 11 24 24 C 1.41383 * 106.84016 * 179.88395 * 23 22 12 25 25 C 1.34512 * 106.83854 * 0.37340 * 24 23 22 26 26 O 1.34299 * 125.78996 * 40.01755 * 22 12 11 27 27 H 1.08006 * 119.99938 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00549 * 179.97438 * 1 2 3 29 29 H 1.07997 * 119.99841 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47120 * 4.99460 * 3 2 1 31 31 H 1.08998 * 109.46862 * 245.00263 * 3 2 1 32 32 H 1.09002 * 109.47153 * 59.99773 * 4 3 2 33 33 H 1.09001 * 109.46832 * 299.99964 * 4 3 2 34 34 H 1.09000 * 109.46986 * 179.97438 * 8 6 5 35 35 H 1.08997 * 109.46833 * 300.00204 * 8 6 5 36 36 H 1.09001 * 109.46890 * 59.99978 * 8 6 5 37 37 H 0.97002 * 119.99984 * 180.02562 * 17 16 14 38 38 H 1.08002 * 126.58467 * 0.02562 * 23 22 12 39 39 H 1.08004 * 126.58177 * 180.15719 * 24 23 22 40 40 H 1.08002 * 125.79003 * 179.75332 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 8 3.7491 2.5709 1.1819 6 6 4.6886 2.6997 2.2510 7 1 5.0655 1.7141 2.5241 8 6 4.0006 3.3358 3.4606 9 6 5.8356 3.5716 1.8094 10 8 5.8048 4.1085 0.7274 11 8 6.8917 3.7519 2.6181 12 6 7.9599 4.6039 2.1273 13 1 8.0052 4.5401 1.0402 14 6 9.2728 4.1508 2.7121 15 1 9.3015 3.3070 3.3857 16 6 10.4376 4.8133 2.3873 17 7 10.4027 5.8411 1.5675 18 14 12.0648 4.2520 3.1128 19 1 12.3275 2.8468 2.7108 20 1 13.1576 5.1226 2.6097 21 1 12.0032 4.3399 4.5939 22 6 7.6934 6.0297 2.5363 23 6 7.9074 7.1190 1.7767 24 6 7.5198 8.2387 2.5480 25 6 7.0999 7.7673 3.7357 26 8 7.2072 6.4286 3.7229 27 1 -0.5400 0.9354 -0.0004 28 1 -0.5401 -0.9352 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 3.7399 0.5065 1.0922 33 1 2.4772 1.2357 2.1130 34 1 4.7171 3.4336 4.2762 35 1 3.6236 4.3213 3.1874 36 1 3.1709 2.7051 3.7799 37 1 11.2222 6.3070 1.3387 38 1 8.2981 7.1351 0.7700 39 1 7.5573 9.2743 2.2434 40 1 6.7380 8.3640 4.5600 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526994094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:58 Heat of formation + Delta-G solvation = -99.941691 kcal Electronic energy + Delta-G solvation = -23596.462050 eV Core-core repulsion = 19958.109057 eV Total energy + Delta-G solvation = -3638.352993 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.34444 -39.78026 -38.08512 -35.73030 -35.15511 -33.31665 -31.70788 -31.68145 -29.61361 -29.05847 -26.68229 -24.75422 -23.24787 -22.65617 -20.76597 -20.37075 -19.92418 -19.22775 -17.29240 -17.13167 -16.67201 -16.33813 -15.75877 -15.49131 -15.22907 -14.85438 -14.78055 -14.47542 -13.76868 -13.45464 -13.33433 -12.76806 -12.64505 -12.27198 -12.19593 -11.99961 -11.76446 -11.56998 -11.34356 -11.32995 -11.26930 -11.14446 -11.05660 -10.94776 -10.39632 -10.10640 -9.91871 -9.60159 -9.43575 -9.37303 -8.82097 -8.64955 -7.25641 -6.22141 -4.40647 1.97563 2.79606 2.88106 3.04704 3.23061 3.26491 3.30108 3.87933 4.06052 4.19217 4.28969 4.72896 4.85229 4.92777 5.03553 5.06262 5.11249 5.20311 5.28537 5.41082 5.60288 5.70033 5.74108 5.79938 5.85919 5.91517 6.07203 6.22620 6.36098 6.36288 6.49276 6.70047 6.98679 7.08342 7.15418 7.23266 7.37234 7.68767 7.69654 7.84533 8.36059 8.51182 8.76944 9.26162 10.76581 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.019223 B = 0.003756 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.213992 B = 7453.292398 C = 8254.615858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.150 4.150 3 C -0.094 4.094 4 C 0.064 3.936 5 O -0.361 6.361 6 C 0.099 3.901 7 H 0.095 0.905 8 C -0.167 4.167 9 C 0.453 3.547 10 O -0.495 6.495 11 O -0.346 6.346 12 C 0.299 3.701 13 H 0.079 0.921 14 C -0.532 4.532 15 H 0.078 0.922 16 C 0.070 3.930 17 N -0.867 5.867 18 Si 0.915 3.085 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.025 3.975 23 C -0.178 4.178 24 C -0.218 4.218 25 C -0.088 4.088 26 O -0.176 6.176 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.270 0.730 38 H 0.141 0.859 39 H 0.131 0.869 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.823 -6.877 1.548 15.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.169 4.169 3 C -0.131 4.131 4 C -0.012 4.012 5 O -0.280 6.280 6 C 0.040 3.960 7 H 0.113 0.887 8 C -0.224 4.224 9 C 0.293 3.707 10 O -0.382 6.382 11 O -0.263 6.263 12 C 0.246 3.754 13 H 0.096 0.904 14 C -0.569 4.569 15 H 0.096 0.904 16 C -0.136 4.136 17 N -0.501 5.501 18 Si 0.741 3.259 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.198 1.198 22 C -0.026 4.026 23 C -0.197 4.197 24 C -0.237 4.237 25 C -0.156 4.156 26 O -0.073 6.073 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.129 0.871 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.159 0.841 39 H 0.149 0.851 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -13.764 -6.585 1.214 15.307 hybrid contribution 1.148 0.126 0.335 1.203 sum -12.616 -6.459 1.549 14.257 Atomic orbital electron populations 1.23888 0.95881 1.01970 1.01065 1.22828 0.95999 0.98087 0.99944 1.20651 0.97928 0.95767 0.98784 1.22531 0.94117 0.86184 0.98382 1.88001 1.53641 1.37197 1.49123 1.21378 0.87711 0.98946 0.87976 0.88735 1.22179 1.01409 1.02033 0.96781 1.23121 0.83721 0.80349 0.83462 1.90632 1.78934 1.46121 1.22517 1.86521 1.28252 1.64225 1.47293 1.19192 0.81962 0.77375 0.96832 0.90364 1.20845 0.88200 1.16749 1.31150 0.90436 1.24949 0.99543 0.94377 0.94775 1.70027 1.28899 1.18749 1.32471 0.86276 0.81363 0.78718 0.79512 1.19716 1.20926 1.19837 1.23519 0.98499 0.98360 0.82196 1.21216 1.05972 0.90500 1.02004 1.21695 1.06911 0.99470 0.95649 1.23600 1.09671 0.82063 1.00244 1.83981 1.65507 1.22121 1.35682 0.88428 0.88392 0.87146 0.90503 0.89773 0.92889 0.92938 0.89736 0.91248 0.91411 0.92063 0.84101 0.85130 0.79873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.43 14.32 29.01 0.42 -1.02 16 2 C -0.15 -1.25 9.52 -36.03 -0.34 -1.60 16 3 C -0.09 -0.96 6.03 -27.89 -0.17 -1.12 16 4 C 0.06 0.73 5.73 37.16 0.21 0.94 16 5 O -0.36 -5.69 9.53 -55.13 -0.53 -6.22 16 6 C 0.10 1.57 3.24 -27.88 -0.09 1.48 16 7 H 0.09 1.24 7.79 -51.93 -0.40 0.84 16 8 C -0.17 -2.24 9.50 37.16 0.35 -1.89 16 9 C 0.45 9.72 7.25 36.01 0.26 9.98 16 10 O -0.49 -12.22 15.73 -25.46 -0.40 -12.62 16 11 O -0.35 -8.18 9.84 -41.29 -0.41 -8.59 16 12 C 0.30 7.98 2.42 -29.03 -0.07 7.91 16 13 H 0.08 2.24 7.15 -51.93 -0.37 1.87 16 14 C -0.53 -14.65 8.89 -34.44 -0.31 -14.96 16 15 H 0.08 2.08 7.81 -52.48 -0.41 1.67 16 16 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 17 N -0.87 -24.01 10.92 55.43 0.61 -23.41 16 18 Si 0.92 20.82 29.54 -169.99 -5.02 15.80 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 C 0.03 0.66 5.54 -35.63 -0.20 0.46 16 23 C -0.18 -4.47 9.16 -39.70 -0.36 -4.83 16 24 C -0.22 -4.71 10.91 -39.70 -0.43 -5.14 16 25 C -0.09 -1.83 12.09 29.41 0.36 -1.47 16 26 O -0.18 -4.33 10.65 4.48 0.05 -4.28 16 27 H 0.10 0.70 7.84 -52.48 -0.41 0.29 16 28 H 0.10 0.60 8.06 -52.49 -0.42 0.18 16 29 H 0.11 0.80 8.06 -52.49 -0.42 0.38 16 30 H 0.08 0.78 7.79 -51.93 -0.40 0.38 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.54 8.08 -51.93 -0.42 0.12 16 33 H 0.05 0.50 7.87 -51.93 -0.41 0.10 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.70 7.87 -51.93 -0.41 0.29 16 37 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.14 3.64 7.85 -52.49 -0.41 3.23 16 39 H 0.13 2.39 8.06 -52.48 -0.42 1.96 16 40 H 0.18 2.86 8.06 -52.49 -0.42 2.44 16 LS Contribution 352.45 15.07 5.31 5.31 Total: -1.00 -31.98 352.45 -6.60 -38.58 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.75 Total: 4.91 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -0.47 Total: -9.48 kcal Atomic # 7 Polarization: -24.01 SS G_CDS: 0.61 Total: -23.41 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -1.28 Total: -31.71 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.98 -6.60 -38.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526994094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.361 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds