Wall clock time and date at job start Tue Mar 31 2020 07:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00215 * 2 1 4 4 C 1.52997 * 109.47466 * 124.99708 * 3 2 1 5 5 O 1.42898 * 109.47319 * 180.02562 * 4 3 2 6 6 C 1.42902 * 114.00186 * 180.02562 * 5 4 3 7 7 H 1.08993 * 109.46807 * 29.99983 * 6 5 4 8 8 C 1.53002 * 109.47072 * 269.99829 * 6 5 4 9 9 C 1.50700 * 109.47036 * 149.99828 * 6 5 4 10 10 O 1.20826 * 120.00480 * 4.99839 * 9 6 5 11 11 O 1.34229 * 119.99890 * 184.99942 * 9 6 5 12 12 C 1.45194 * 117.00055 * 179.97438 * 11 9 6 13 13 H 1.09000 * 109.47257 * 329.99875 * 12 11 9 14 14 C 1.50700 * 109.47286 * 210.00160 * 12 11 9 15 15 H 1.08004 * 120.00028 * 359.97438 * 14 12 11 16 16 C 1.37877 * 120.00215 * 179.97438 * 14 12 11 17 17 N 1.31516 * 119.99923 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99918 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47048 * 60.00750 * 18 16 14 20 20 H 1.48502 * 109.47042 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47517 * 300.00275 * 18 16 14 22 22 C 1.50701 * 109.47100 * 90.00504 * 12 11 9 23 23 C 1.34511 * 125.78611 * 219.71902 * 22 12 11 24 24 C 1.41383 * 106.84016 * 179.88395 * 23 22 12 25 25 C 1.34512 * 106.83854 * 0.37340 * 24 23 22 26 26 O 1.34299 * 125.78996 * 40.01755 * 22 12 11 27 27 H 1.08006 * 119.99938 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00549 * 179.97438 * 1 2 3 29 29 H 1.07997 * 119.99841 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47120 * 4.99460 * 3 2 1 31 31 H 1.08998 * 109.46862 * 245.00263 * 3 2 1 32 32 H 1.09002 * 109.47153 * 59.99773 * 4 3 2 33 33 H 1.09001 * 109.46832 * 299.99964 * 4 3 2 34 34 H 1.09000 * 109.46986 * 179.97438 * 8 6 5 35 35 H 1.08997 * 109.46833 * 300.00204 * 8 6 5 36 36 H 1.09001 * 109.46890 * 59.99978 * 8 6 5 37 37 H 0.97002 * 119.99984 * 180.02562 * 17 16 14 38 38 H 1.08002 * 126.58467 * 0.02562 * 23 22 12 39 39 H 1.08004 * 126.58177 * 180.15719 * 24 23 22 40 40 H 1.08002 * 125.79003 * 179.75332 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 8 3.7491 2.5709 1.1819 6 6 4.6886 2.6997 2.2510 7 1 5.0655 1.7141 2.5241 8 6 4.0006 3.3358 3.4606 9 6 5.8356 3.5716 1.8094 10 8 5.8048 4.1085 0.7274 11 8 6.8917 3.7519 2.6181 12 6 7.9599 4.6039 2.1273 13 1 8.0052 4.5401 1.0402 14 6 9.2728 4.1508 2.7121 15 1 9.3015 3.3070 3.3857 16 6 10.4376 4.8133 2.3873 17 7 10.4027 5.8411 1.5675 18 14 12.0648 4.2520 3.1128 19 1 12.3275 2.8468 2.7108 20 1 13.1576 5.1226 2.6097 21 1 12.0032 4.3399 4.5939 22 6 7.6934 6.0297 2.5363 23 6 7.9074 7.1190 1.7767 24 6 7.5198 8.2387 2.5480 25 6 7.0999 7.7673 3.7357 26 8 7.2072 6.4286 3.7229 27 1 -0.5400 0.9354 -0.0004 28 1 -0.5401 -0.9352 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 3.7399 0.5065 1.0922 33 1 2.4772 1.2357 2.1130 34 1 4.7171 3.4336 4.2762 35 1 3.6236 4.3213 3.1874 36 1 3.1709 2.7051 3.7799 37 1 11.2222 6.3070 1.3387 38 1 8.2981 7.1351 0.7700 39 1 7.5573 9.2743 2.2434 40 1 6.7380 8.3640 4.5600 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526994094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:57 Heat of formation + Delta-G solvation = -118.027898 kcal Electronic energy + Delta-G solvation = -23597.246327 eV Core-core repulsion = 19958.109057 eV Total energy + Delta-G solvation = -3639.137269 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.18800 -41.46154 -39.33068 -37.48745 -36.01763 -35.31979 -33.55765 -32.89023 -31.43974 -29.93188 -28.60759 -26.22272 -24.75343 -23.85812 -22.47552 -22.03934 -21.09769 -20.62062 -19.10879 -18.72395 -18.38995 -17.73681 -17.22103 -16.98937 -16.66629 -16.46002 -16.32551 -15.87696 -15.19197 -14.82938 -14.47162 -14.24290 -13.87785 -13.76975 -13.51372 -13.48330 -13.29842 -13.24226 -13.11366 -13.04677 -12.79938 -12.27987 -12.22335 -12.15387 -12.05688 -11.96373 -11.41407 -11.31067 -10.81079 -10.70083 -10.52876 -10.25090 -9.12992 -8.24825 -6.54248 1.05522 1.18238 1.31595 1.39772 1.44375 1.50389 1.61953 2.05572 2.34267 2.40417 2.86245 3.00901 3.64903 3.84522 3.90935 4.04955 4.15221 4.20476 4.25215 4.38694 4.45928 4.46346 4.53841 4.62193 4.66733 4.76783 4.89767 5.04562 5.12093 5.13540 5.16454 5.29563 5.39314 5.43811 5.65097 5.74571 5.79061 5.86656 5.92424 6.04241 6.47319 6.56429 6.86922 7.17557 8.72231 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.019223 B = 0.003756 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.213992 B = 7453.292398 C = 8254.615858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.161 4.161 3 C -0.093 4.093 4 C 0.057 3.943 5 O -0.389 6.389 6 C 0.108 3.892 7 H 0.127 0.873 8 C -0.159 4.159 9 C 0.443 3.557 10 O -0.538 6.538 11 O -0.349 6.349 12 C 0.302 3.698 13 H 0.039 0.961 14 C -0.558 4.558 15 H 0.078 0.922 16 C 0.023 3.977 17 N -0.892 5.892 18 Si 0.983 3.017 19 H -0.261 1.261 20 H -0.278 1.278 21 H -0.267 1.267 22 C -0.004 4.004 23 C -0.194 4.194 24 C -0.229 4.229 25 C -0.068 4.068 26 O -0.192 6.192 27 H 0.098 0.902 28 H 0.115 0.885 29 H 0.122 0.878 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.107 0.893 37 H 0.271 0.729 38 H 0.120 0.880 39 H 0.166 0.834 40 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.793 -7.477 3.674 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.179 4.179 3 C -0.130 4.130 4 C -0.018 4.018 5 O -0.309 6.309 6 C 0.049 3.951 7 H 0.144 0.856 8 C -0.216 4.216 9 C 0.287 3.713 10 O -0.427 6.427 11 O -0.266 6.266 12 C 0.248 3.752 13 H 0.057 0.943 14 C -0.594 4.594 15 H 0.096 0.904 16 C -0.180 4.180 17 N -0.527 5.527 18 Si 0.806 3.194 19 H -0.186 1.186 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.055 4.055 23 C -0.214 4.214 24 C -0.248 4.248 25 C -0.134 4.134 26 O -0.089 6.089 27 H 0.116 0.884 28 H 0.133 0.867 29 H 0.140 0.860 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.126 0.874 37 H 0.080 0.920 38 H 0.138 0.862 39 H 0.183 0.817 40 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -14.761 -7.204 3.341 16.762 hybrid contribution 1.317 0.350 -0.388 1.417 sum -13.444 -6.854 2.953 15.377 Atomic orbital electron populations 1.24083 0.95668 1.02864 0.99382 1.22789 0.96267 0.97439 1.01410 1.20635 0.97673 0.96916 0.97791 1.22834 0.94363 0.84676 0.99929 1.87979 1.53770 1.39694 1.49450 1.21513 0.86008 0.99093 0.88490 0.85594 1.22174 1.02329 1.01860 0.95271 1.24493 0.84067 0.80147 0.82622 1.90601 1.79647 1.48138 1.24347 1.86508 1.28531 1.63835 1.47683 1.18766 0.83021 0.78772 0.94663 0.94339 1.21131 0.89231 1.17342 1.31717 0.90384 1.25874 1.02966 0.94267 0.94922 1.70172 1.29729 1.19552 1.33212 0.85229 0.76706 0.78721 0.78772 1.18590 1.20322 1.19223 1.23288 1.00659 0.98193 0.83359 1.21290 1.06262 0.92240 1.01577 1.22048 1.07055 1.00178 0.95547 1.24698 1.06797 0.80659 1.01275 1.83952 1.65733 1.24273 1.34900 0.88372 0.86691 0.85994 0.90953 0.91336 0.91772 0.90516 0.89861 0.92828 0.87391 0.92011 0.86203 0.81694 0.74215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 14.32 67.78 0.97 -1.39 16 2 C -0.16 -2.41 9.52 25.65 0.24 -2.16 16 3 C -0.09 -1.82 6.03 29.85 0.18 -1.64 16 4 C 0.06 1.20 5.73 71.98 0.41 1.62 16 5 O -0.39 -12.14 9.53 -129.95 -1.24 -13.38 16 6 C 0.11 3.34 3.24 29.85 0.10 3.44 16 7 H 0.13 3.08 7.79 -2.39 -0.02 3.06 16 8 C -0.16 -4.01 9.50 71.98 0.68 -3.32 16 9 C 0.44 19.77 7.25 71.24 0.52 20.28 16 10 O -0.54 -28.24 15.73 28.38 0.45 -27.79 16 11 O -0.35 -17.17 9.84 -49.47 -0.49 -17.65 16 12 C 0.30 16.94 2.42 29.10 0.07 17.01 16 13 H 0.04 2.42 7.15 -2.39 -0.02 2.40 16 14 C -0.56 -31.70 8.89 25.60 0.23 -31.48 16 15 H 0.08 4.28 7.81 -2.91 -0.02 4.26 16 16 C 0.02 1.26 5.30 84.65 0.45 1.71 16 17 N -0.89 -51.00 10.92 21.45 0.23 -50.77 16 18 Si 0.98 42.85 29.54 68.60 2.03 44.87 16 19 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 20 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 22 C 0.00 -0.24 5.54 24.83 0.14 -0.10 16 23 C -0.19 -10.10 9.16 22.19 0.20 -9.90 16 24 C -0.23 -9.65 10.91 22.19 0.24 -9.41 16 25 C -0.07 -2.65 12.09 66.97 0.81 -1.84 16 26 O -0.19 -9.36 10.65 -1.29 -0.01 -9.37 16 27 H 0.10 1.24 7.84 -2.91 -0.02 1.22 16 28 H 0.11 1.10 8.06 -2.91 -0.02 1.08 16 29 H 0.12 1.53 8.06 -2.91 -0.02 1.50 16 30 H 0.07 1.45 7.79 -2.39 -0.02 1.43 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.19 8.08 -2.39 -0.02 1.17 16 33 H 0.08 1.24 7.87 -2.39 -0.02 1.22 16 34 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.11 1.85 7.87 -2.39 -0.02 1.83 16 37 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 38 H 0.12 6.61 7.85 -2.91 -0.02 6.59 16 39 H 0.17 5.63 8.06 -2.91 -0.02 5.61 16 40 H 0.24 6.30 8.06 -2.91 -0.02 6.28 16 Total: -1.00 -73.77 352.45 7.23 -66.54 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 1.02 Total: 24.74 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 5.24 Total: -17.19 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.23 Total: -50.77 kcal Atomic # 8 Polarization: -66.91 SS G_CDS: -1.29 Total: -68.20 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -73.77 7.23 -66.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526994094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.485 kcal (2) G-P(sol) polarization free energy of solvation -73.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds