Wall clock time and date at job start Tue Mar 31 2020 07:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47078 * 2 1 4 4 C 1.52998 * 109.46870 * 240.00001 * 2 1 3 5 5 C 1.50694 * 109.47208 * 64.99943 * 4 2 1 6 6 O 1.21283 * 120.00335 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99806 * 179.97438 * 5 4 2 8 8 C 1.46503 * 119.99842 * 179.97438 * 7 5 4 9 9 H 1.08995 * 112.84815 * 23.80597 * 8 7 5 10 10 C 1.53787 * 113.61179 * 155.00273 * 8 7 5 11 11 C 1.53784 * 87.08203 * 89.19885 * 10 8 7 12 12 H 1.08997 * 113.60934 * 140.06519 * 11 10 8 13 13 N 1.46500 * 113.61177 * 270.88118 * 11 10 8 14 14 C 1.36935 * 119.99795 * 203.46828 * 13 11 10 15 15 H 1.08006 * 119.99956 * 0.02562 * 14 13 11 16 16 C 1.38809 * 120.00104 * 180.02562 * 14 13 11 17 17 N 1.31615 * 120.00002 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00116 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47261 * 239.99934 * 18 16 14 21 21 H 1.48500 * 109.47454 * 119.99927 * 18 16 14 22 22 C 1.53786 * 87.17231 * 25.47199 * 11 10 8 23 23 C 1.53005 * 109.47006 * 119.99826 * 2 1 3 24 24 F 1.39903 * 109.46634 * 180.02562 * 23 2 1 25 25 F 1.39896 * 109.46939 * 299.99964 * 23 2 1 26 26 F 1.39892 * 109.47169 * 60.00196 * 23 2 1 27 27 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46986 * 299.99813 * 1 2 3 29 29 H 1.09001 * 109.47234 * 60.00064 * 1 2 3 30 30 H 1.09001 * 109.46802 * 304.99638 * 4 2 1 31 31 H 1.09006 * 109.46956 * 185.00290 * 4 2 1 32 32 H 0.96997 * 119.99824 * 359.97438 * 7 5 4 33 33 H 1.09000 * 113.61203 * 334.64895 * 10 8 7 34 34 H 1.08997 * 113.68322 * 203.76204 * 10 8 7 35 35 H 0.96997 * 120.00022 * 23.47302 * 13 11 10 36 36 H 0.97004 * 120.00335 * 0.02562 * 17 16 14 37 37 H 1.09007 * 113.61089 * 89.07136 * 22 11 10 38 38 H 1.09001 * 113.61237 * 219.97627 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4765 6 8 1.0109 1.0869 -2.3633 7 7 1.9853 -0.3915 -3.7001 8 6 1.5972 0.3648 -4.8933 9 1 1.4200 1.4202 -4.6863 10 6 2.5143 0.1197 -6.1032 11 6 1.5811 -1.0447 -6.4751 12 1 1.3922 -1.1280 -7.5454 13 7 1.9622 -2.3203 -5.8637 14 6 1.5676 -3.4994 -6.4374 15 1 0.9758 -3.4890 -7.3409 16 6 1.9282 -4.7081 -5.8579 17 7 2.6489 -4.7208 -4.7567 18 14 1.3906 -6.3166 -6.6409 19 1 0.5949 -6.0312 -7.8619 20 1 0.5600 -7.0829 -5.6774 21 1 2.5887 -7.1145 -7.0056 22 6 0.4735 -0.3013 -5.7099 23 6 2.0400 -0.7212 1.2493 24 9 3.4391 -0.7207 1.2495 25 9 1.5737 -0.0617 2.3915 26 9 1.5738 -2.0402 1.2493 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6053 -1.7198 -1.2951 31 1 3.1263 -0.7995 -1.2056 32 1 2.4898 -1.2150 -3.7906 33 1 3.5210 -0.1973 -5.8309 34 1 2.5084 0.9330 -6.8289 35 1 2.4939 -2.3297 -5.0525 36 1 2.9279 -3.8856 -4.3498 37 1 -0.0904 0.3977 -6.3277 38 1 -0.1662 -0.9581 -5.1204 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752757554.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:01 Heat of formation + Delta-G solvation = -166.242485 kcal Electronic energy + Delta-G solvation = -24529.246827 eV Core-core repulsion = 20378.454827 eV Total energy + Delta-G solvation = -4150.792000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.19437 -47.68746 -47.63893 -40.17224 -38.36746 -35.08639 -34.00627 -32.91287 -29.78891 -28.18454 -26.37888 -25.27732 -24.26030 -23.04405 -21.54796 -20.26042 -19.13389 -18.64575 -18.41515 -17.78355 -17.48222 -16.37900 -15.93646 -15.47695 -14.99957 -14.76857 -14.56535 -14.37339 -14.09388 -13.94714 -13.81649 -13.79864 -13.74159 -13.51021 -13.25663 -13.08274 -12.54929 -12.19446 -12.08999 -11.56272 -11.47142 -11.42106 -11.36942 -10.84296 -10.62897 -10.32074 -10.13398 -9.94959 -9.70709 -9.29138 -9.01110 -8.74140 -7.21054 -6.25109 -3.26781 2.58801 2.69181 3.22327 3.46053 3.51443 3.61111 3.72203 3.94370 3.96391 4.53885 4.55925 4.72292 4.83690 4.94193 5.08675 5.11699 5.32112 5.37208 5.40354 5.45984 5.64034 5.69609 5.76224 5.79900 5.98167 6.05263 6.14986 6.18546 6.41260 6.55666 6.67039 6.93238 7.64695 7.71971 8.30995 8.58285 9.04242 9.89662 10.02834 11.22015 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.004475 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.893375 B = 6255.484584 C = 7544.305958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.114 4.114 3 H 0.121 0.879 4 C -0.148 4.148 5 C 0.525 3.475 6 O -0.547 6.547 7 N -0.699 5.699 8 C 0.123 3.877 9 H 0.093 0.907 10 C -0.168 4.168 11 C 0.169 3.831 12 H 0.067 0.933 13 N -0.715 5.715 14 C -0.334 4.334 15 H 0.069 0.931 16 C -0.042 4.042 17 N -0.940 5.940 18 Si 1.086 2.914 19 H -0.294 1.294 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.185 4.185 23 C 0.453 3.547 24 F -0.184 7.184 25 F -0.184 7.184 26 F -0.179 7.179 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.405 0.595 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.361 0.639 36 H 0.251 0.749 37 H 0.079 0.921 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.016 10.677 7.937 13.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.134 4.134 3 H 0.139 0.861 4 C -0.188 4.188 5 C 0.311 3.689 6 O -0.426 6.426 7 N -0.351 5.351 8 C 0.017 3.983 9 H 0.111 0.889 10 C -0.208 4.208 11 C 0.057 3.943 12 H 0.085 0.915 13 N -0.357 5.357 14 C -0.465 4.465 15 H 0.087 0.913 16 C -0.240 4.240 17 N -0.585 5.585 18 Si 0.917 3.083 19 H -0.220 1.220 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.228 4.228 23 C 0.398 3.602 24 F -0.166 7.166 25 F -0.165 7.165 26 F -0.161 7.161 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.243 0.757 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.196 0.804 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.497 9.664 7.963 12.611 hybrid contribution 0.457 1.107 0.314 1.238 sum -1.040 10.771 8.277 13.624 Atomic orbital electron populations 1.22013 0.90951 1.03629 1.05028 1.22132 1.00345 1.01405 0.89517 0.86120 1.21738 1.04141 1.01276 0.91683 1.20142 0.79061 0.85257 0.84440 1.90639 1.40433 1.24813 1.86709 1.45845 1.56661 1.27508 1.05076 1.21855 0.96913 0.95660 0.83839 0.88851 1.23862 0.99134 1.00573 0.97183 1.21142 0.91981 0.85010 0.96197 0.91509 1.42235 1.63249 1.00641 1.29599 1.20152 1.31604 0.85523 1.09214 0.91262 1.25813 0.99226 1.00969 0.97954 1.70897 1.39009 1.28334 1.20296 0.83130 0.75748 0.74884 0.74544 1.22036 1.21928 1.21908 1.24315 0.98239 1.00253 0.99947 1.20655 0.75395 0.77912 0.86192 1.93181 1.30155 1.96442 1.96802 1.93164 1.88500 1.80801 1.54064 1.93194 1.88374 1.37728 1.96788 0.91614 0.91547 0.88321 0.86988 0.87543 0.75743 0.91204 0.88933 0.80421 0.93787 0.90284 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 8.69 37.16 0.32 -1.51 16 2 C -0.11 -1.30 2.01 -90.62 -0.18 -1.49 16 3 H 0.12 1.31 7.96 -51.93 -0.41 0.90 16 4 C -0.15 -1.83 4.93 -27.89 -0.14 -1.97 16 5 C 0.52 7.84 7.55 -10.99 -0.08 7.76 16 6 O -0.55 -9.17 13.56 5.56 0.08 -9.10 16 7 N -0.70 -10.93 5.14 -52.88 -0.27 -11.20 16 8 C 0.12 1.91 4.33 -66.97 -0.29 1.62 16 9 H 0.09 1.43 7.46 -51.93 -0.39 1.04 16 10 C -0.17 -2.53 7.58 -25.91 -0.20 -2.73 16 11 C 0.17 3.15 4.55 -67.11 -0.31 2.84 16 12 H 0.07 1.26 8.11 -51.93 -0.42 0.84 16 13 N -0.72 -16.42 5.17 -52.63 -0.27 -16.69 16 14 C -0.33 -8.87 9.97 -15.06 -0.15 -9.02 16 15 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 16 C -0.04 -1.16 5.50 -17.43 -0.10 -1.25 16 17 N -0.94 -27.22 13.70 55.49 0.76 -26.46 16 18 Si 1.09 24.99 29.92 -169.99 -5.09 19.91 16 19 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 22 C -0.19 -3.13 7.70 -25.77 -0.20 -3.33 16 23 C 0.45 5.33 2.69 37.16 0.10 5.43 16 24 F -0.18 -2.25 16.71 2.25 0.04 -2.21 16 25 F -0.18 -2.17 16.80 2.25 0.04 -2.13 16 26 F -0.18 -2.32 16.37 2.25 0.04 -2.28 16 27 H 0.06 0.75 7.80 -51.93 -0.41 0.34 16 28 H 0.07 0.67 7.80 -51.93 -0.41 0.27 16 29 H 0.10 1.30 5.95 -51.93 -0.31 0.99 16 30 H 0.11 1.42 7.94 -51.93 -0.41 1.01 16 31 H 0.11 1.16 7.67 -51.93 -0.40 0.77 16 32 H 0.40 6.62 6.16 -40.82 -0.25 6.37 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.36 8.20 4.20 -40.82 -0.17 8.03 16 36 H 0.25 6.99 6.78 -40.82 -0.28 6.72 16 37 H 0.08 1.16 8.14 -51.92 -0.42 0.73 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 322.40 15.07 4.86 4.86 Total: -1.00 -29.99 322.40 -5.79 -35.77 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -4.75 Total: 13.18 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -1.22 Total: -3.65 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.22 Total: -54.35 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.10 kcal Atomic # 9 Polarization: -6.74 SS G_CDS: 0.11 Total: -6.62 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.09 Total: 19.91 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.99 -5.79 -35.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752757554.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.469 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds