Wall clock time and date at job start Tue Mar 31 2020 07:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47078 * 2 1 4 4 C 1.52998 * 109.46870 * 240.00001 * 2 1 3 5 5 C 1.50694 * 109.47208 * 64.99943 * 4 2 1 6 6 O 1.21283 * 120.00335 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99806 * 179.97438 * 5 4 2 8 8 C 1.46503 * 119.99842 * 179.97438 * 7 5 4 9 9 H 1.08995 * 112.84815 * 23.80597 * 8 7 5 10 10 C 1.53787 * 113.61179 * 155.00273 * 8 7 5 11 11 C 1.53784 * 87.08203 * 89.19885 * 10 8 7 12 12 H 1.08997 * 113.60934 * 140.06519 * 11 10 8 13 13 N 1.46500 * 113.61177 * 270.88118 * 11 10 8 14 14 C 1.36935 * 119.99795 * 203.46828 * 13 11 10 15 15 H 1.08006 * 119.99956 * 0.02562 * 14 13 11 16 16 C 1.38809 * 120.00104 * 180.02562 * 14 13 11 17 17 N 1.31615 * 120.00002 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00116 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47261 * 239.99934 * 18 16 14 21 21 H 1.48500 * 109.47454 * 119.99927 * 18 16 14 22 22 C 1.53786 * 87.17231 * 25.47199 * 11 10 8 23 23 C 1.53005 * 109.47006 * 119.99826 * 2 1 3 24 24 F 1.39903 * 109.46634 * 180.02562 * 23 2 1 25 25 F 1.39896 * 109.46939 * 299.99964 * 23 2 1 26 26 F 1.39892 * 109.47169 * 60.00196 * 23 2 1 27 27 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46986 * 299.99813 * 1 2 3 29 29 H 1.09001 * 109.47234 * 60.00064 * 1 2 3 30 30 H 1.09001 * 109.46802 * 304.99638 * 4 2 1 31 31 H 1.09006 * 109.46956 * 185.00290 * 4 2 1 32 32 H 0.96997 * 119.99824 * 359.97438 * 7 5 4 33 33 H 1.09000 * 113.61203 * 334.64895 * 10 8 7 34 34 H 1.08997 * 113.68322 * 203.76204 * 10 8 7 35 35 H 0.96997 * 120.00022 * 23.47302 * 13 11 10 36 36 H 0.97004 * 120.00335 * 0.02562 * 17 16 14 37 37 H 1.09007 * 113.61089 * 89.07136 * 22 11 10 38 38 H 1.09001 * 113.61237 * 219.97627 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4765 6 8 1.0109 1.0869 -2.3633 7 7 1.9853 -0.3915 -3.7001 8 6 1.5972 0.3648 -4.8933 9 1 1.4200 1.4202 -4.6863 10 6 2.5143 0.1197 -6.1032 11 6 1.5811 -1.0447 -6.4751 12 1 1.3922 -1.1280 -7.5454 13 7 1.9622 -2.3203 -5.8637 14 6 1.5676 -3.4994 -6.4374 15 1 0.9758 -3.4890 -7.3409 16 6 1.9282 -4.7081 -5.8579 17 7 2.6489 -4.7208 -4.7567 18 14 1.3906 -6.3166 -6.6409 19 1 0.5949 -6.0312 -7.8619 20 1 0.5600 -7.0829 -5.6774 21 1 2.5887 -7.1145 -7.0056 22 6 0.4735 -0.3013 -5.7099 23 6 2.0400 -0.7212 1.2493 24 9 3.4391 -0.7207 1.2495 25 9 1.5737 -0.0617 2.3915 26 9 1.5738 -2.0402 1.2493 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6053 -1.7198 -1.2951 31 1 3.1263 -0.7995 -1.2056 32 1 2.4898 -1.2150 -3.7906 33 1 3.5210 -0.1973 -5.8309 34 1 2.5084 0.9330 -6.8289 35 1 2.4939 -2.3297 -5.0525 36 1 2.9279 -3.8856 -4.3498 37 1 -0.0904 0.3977 -6.3277 38 1 -0.1662 -0.9581 -5.1204 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752757554.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:01 Heat of formation + Delta-G solvation = -184.540589 kcal Electronic energy + Delta-G solvation = -24530.040292 eV Core-core repulsion = 20378.454827 eV Total energy + Delta-G solvation = -4151.585465 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.16332 -48.64301 -48.62687 -41.43271 -39.68993 -36.18891 -35.74964 -34.28291 -31.61158 -29.26393 -27.34439 -26.61265 -26.05020 -24.54484 -22.66130 -21.45041 -20.49569 -19.71970 -19.49209 -19.34665 -18.67861 -17.58739 -17.11817 -16.76903 -16.50366 -16.05284 -15.71682 -15.55892 -15.50567 -15.14174 -15.06207 -14.96654 -14.79660 -14.75085 -14.48077 -14.13714 -13.74385 -13.52350 -13.27870 -13.05786 -12.66794 -12.47837 -12.42937 -12.40695 -12.30615 -11.86990 -11.76868 -11.52146 -11.09214 -10.93757 -10.83273 -10.02911 -9.11700 -8.37846 -5.33067 1.47470 1.60746 1.62346 1.70202 1.82052 2.09720 2.69823 2.75431 2.95078 3.01275 3.38474 3.49663 3.58328 3.73714 3.76243 3.80711 3.91419 4.15052 4.22704 4.29656 4.43485 4.47471 4.70826 4.78616 4.82004 4.85911 4.88795 4.97710 5.15480 5.19189 5.29405 5.57506 5.69423 6.40560 6.51443 7.06434 7.12173 7.98372 8.08008 9.13703 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.004475 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.893375 B = 6255.484584 C = 7544.305958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.108 4.108 3 H 0.130 0.870 4 C -0.145 4.145 5 C 0.524 3.476 6 O -0.564 6.564 7 N -0.704 5.704 8 C 0.125 3.875 9 H 0.103 0.897 10 C -0.145 4.145 11 C 0.147 3.853 12 H 0.063 0.937 13 N -0.727 5.727 14 C -0.332 4.332 15 H 0.066 0.934 16 C -0.097 4.097 17 N -0.971 5.971 18 Si 1.128 2.872 19 H -0.275 1.275 20 H -0.294 1.294 21 H -0.292 1.292 22 C -0.177 4.177 23 C 0.457 3.543 24 F -0.186 7.186 25 F -0.182 7.182 26 F -0.187 7.187 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.401 0.599 33 H 0.065 0.935 34 H 0.127 0.873 35 H 0.360 0.640 36 H 0.246 0.754 37 H 0.106 0.894 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.056 11.689 7.612 13.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.128 4.128 3 H 0.148 0.852 4 C -0.185 4.185 5 C 0.312 3.688 6 O -0.444 6.444 7 N -0.355 5.355 8 C 0.019 3.981 9 H 0.121 0.879 10 C -0.184 4.184 11 C 0.037 3.963 12 H 0.082 0.918 13 N -0.370 5.370 14 C -0.463 4.463 15 H 0.084 0.916 16 C -0.289 4.289 17 N -0.619 5.619 18 Si 0.954 3.046 19 H -0.200 1.200 20 H -0.221 1.221 21 H -0.219 1.219 22 C -0.218 4.218 23 C 0.403 3.597 24 F -0.167 7.167 25 F -0.164 7.164 26 F -0.168 7.168 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.126 0.874 31 H 0.140 0.860 32 H 0.238 0.762 33 H 0.084 0.916 34 H 0.145 0.855 35 H 0.195 0.805 36 H 0.057 0.943 37 H 0.125 0.875 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.549 10.728 7.620 13.250 hybrid contribution 0.432 0.877 0.385 1.050 sum -1.117 11.605 8.005 14.142 Atomic orbital electron populations 1.21961 0.91003 1.03446 1.04893 1.22096 1.00244 1.01649 0.88815 0.85204 1.21738 1.05157 1.00638 0.90973 1.20491 0.78435 0.85088 0.84792 1.90630 1.41146 1.25672 1.86964 1.45942 1.56671 1.27369 1.05554 1.21882 0.96295 0.95886 0.84000 0.87858 1.23761 0.97920 0.99480 0.97289 1.21444 0.94301 0.84608 0.95913 0.91847 1.42338 1.63489 1.01303 1.29829 1.20427 1.30278 0.86949 1.08695 0.91622 1.26989 0.99665 1.04043 0.98220 1.70972 1.41015 1.28237 1.21658 0.82581 0.75554 0.71944 0.74509 1.19978 1.22142 1.21859 1.24233 0.97756 1.00019 0.99822 1.20617 0.75258 0.77533 0.86255 1.93180 1.30287 1.96422 1.96814 1.93168 1.88473 1.80707 1.54003 1.93183 1.88469 1.38366 1.96826 0.91847 0.90113 0.89936 0.87447 0.85976 0.76239 0.91600 0.85488 0.80543 0.94350 0.87547 0.94175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 8.69 71.98 0.63 -2.82 16 2 C -0.11 -2.35 2.01 -10.79 -0.02 -2.37 16 3 H 0.13 2.61 7.96 -2.39 -0.02 2.59 16 4 C -0.15 -3.48 4.93 29.85 0.15 -3.33 16 5 C 0.52 15.26 7.55 87.65 0.66 15.92 16 6 O -0.56 -18.32 13.56 -3.04 -0.04 -18.36 16 7 N -0.70 -21.53 5.14 -439.59 -2.26 -23.79 16 8 C 0.12 3.66 4.33 45.61 0.20 3.86 16 9 H 0.10 2.89 7.46 -2.39 -0.02 2.88 16 10 C -0.15 -4.03 7.58 31.12 0.24 -3.80 16 11 C 0.15 5.32 4.55 45.52 0.21 5.53 16 12 H 0.06 2.31 8.11 -2.39 -0.02 2.30 16 13 N -0.73 -33.34 5.17 -320.44 -1.66 -34.99 16 14 C -0.33 -17.62 9.97 84.03 0.84 -16.79 16 15 H 0.07 3.46 7.83 -2.91 -0.02 3.43 16 16 C -0.10 -5.35 5.50 84.86 0.47 -4.88 16 17 N -0.97 -56.80 13.70 21.65 0.30 -56.51 16 18 Si 1.13 50.31 29.92 68.60 2.05 52.37 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 22 C -0.18 -5.72 7.70 31.21 0.24 -5.48 16 23 C 0.46 10.20 2.69 71.98 0.19 10.39 16 24 F -0.19 -4.27 16.71 44.97 0.75 -3.52 16 25 F -0.18 -4.03 16.80 44.97 0.76 -3.27 16 26 F -0.19 -4.68 16.37 44.97 0.74 -3.94 16 27 H 0.06 1.41 7.80 -2.39 -0.02 1.39 16 28 H 0.08 1.53 7.80 -2.39 -0.02 1.51 16 29 H 0.08 2.13 5.95 -2.39 -0.01 2.12 16 30 H 0.11 2.71 7.94 -2.39 -0.02 2.69 16 31 H 0.12 2.53 7.67 -2.38 -0.02 2.51 16 32 H 0.40 13.07 6.16 -92.71 -0.57 12.50 16 33 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.36 16.50 4.20 -92.71 -0.39 16.11 16 36 H 0.25 13.97 6.78 -92.70 -0.63 13.34 16 37 H 0.11 2.84 8.14 -2.38 -0.02 2.82 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -63.31 322.40 4.72 -58.59 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: 0.29 Total: 37.19 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 3.79 Total: -3.77 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -3.62 Total: -115.29 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.04 Total: -18.36 kcal Atomic # 9 Polarization: -12.97 SS G_CDS: 2.24 Total: -10.73 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 2.05 Total: 52.37 kcal Total: -63.31 4.72 -58.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752757554.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.948 kcal (2) G-P(sol) polarization free energy of solvation -63.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds