Wall clock time and date at job start Tue Mar 31 2020 07:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99928 * 179.72352 * 5 4 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 C 1.52997 * 109.47555 * 180.02562 * 8 7 5 10 10 C 1.53940 * 113.74661 * 273.74540 * 9 8 7 11 11 N 1.47811 * 86.03963 * 222.08318 * 10 9 8 12 12 C 1.36935 * 134.45839 * 204.64395 * 11 10 9 13 13 H 1.07993 * 120.00164 * 179.86283 * 12 11 10 14 14 C 1.38821 * 119.99573 * 359.86686 * 12 11 10 15 15 N 1.31614 * 120.00428 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99605 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47185 * 59.99675 * 16 14 12 18 18 H 1.48497 * 109.46995 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47267 * 299.99460 * 16 14 12 20 20 C 1.47576 * 91.04984 * 24.54636 * 11 10 9 21 21 C 1.52994 * 109.47216 * 119.99968 * 2 1 3 22 22 F 1.39899 * 109.47251 * 179.97438 * 21 2 1 23 23 F 1.39895 * 109.47455 * 300.00347 * 21 2 1 24 24 F 1.39905 * 109.47173 * 60.00225 * 21 2 1 25 25 H 1.09001 * 109.47260 * 299.99678 * 1 2 3 26 26 H 1.09001 * 109.47309 * 59.99648 * 1 2 3 27 27 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 29 29 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 30 30 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 31 31 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 32 32 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 33 33 H 1.09001 * 112.93896 * 45.33437 * 9 8 7 34 34 H 1.09001 * 113.76743 * 336.34703 * 10 9 8 35 35 H 1.09003 * 113.76981 * 107.73966 * 10 9 8 36 36 H 0.97001 * 120.00495 * 180.02562 * 15 14 12 37 37 H 1.09001 * 113.77452 * 221.15534 * 20 11 10 38 38 H 1.09003 * 113.77334 * 89.75519 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 8 1.0116 1.0875 -2.3633 7 7 1.9897 -0.3885 -3.6999 8 6 1.6073 0.3712 -4.8927 9 6 2.1216 -0.3473 -6.1417 10 6 3.5680 0.0216 -6.5177 11 7 3.0865 0.0598 -7.9146 12 6 3.6807 -0.0957 -9.1385 13 1 3.0895 -0.0212 -10.0392 14 6 5.0430 -0.3494 -9.2214 15 7 5.7636 -0.4398 -8.1238 16 14 5.8537 -0.5608 -10.8910 17 1 5.6698 0.6768 -11.6909 18 1 7.3043 -0.8201 -10.7075 19 1 5.2317 -1.7067 -11.6018 20 6 1.7085 0.3302 -7.4609 21 6 2.0400 -0.7212 1.2492 22 9 3.4390 -0.7217 1.2489 23 9 1.5737 -0.0618 2.3915 24 9 1.5737 -2.0403 1.2492 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6054 -1.7197 -1.2952 29 1 3.1263 -0.7993 -1.2057 30 1 2.4935 -1.2124 -3.7906 31 1 0.5212 0.4500 -4.9405 32 1 2.0421 1.3695 -4.8424 33 1 1.9334 -1.4208 -6.1220 34 1 3.8873 0.9915 -6.1364 35 1 4.2890 -0.7722 -6.3218 36 1 6.7156 -0.6167 -8.1817 37 1 0.9474 -0.2175 -8.0166 38 1 1.4803 1.3910 -7.3572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753409099.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:40 Heat of formation + Delta-G solvation = -151.136512 kcal Electronic energy + Delta-G solvation = -23584.334567 eV Core-core repulsion = 19434.197611 eV Total energy + Delta-G solvation = -4150.136956 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.36226 -47.84075 -47.82297 -39.95789 -38.10383 -35.42980 -34.40145 -32.22735 -29.59215 -27.94050 -26.57260 -25.54424 -24.82240 -22.30235 -21.58469 -20.46241 -19.16564 -18.73454 -18.52757 -17.80311 -16.85711 -16.41402 -16.09243 -15.73194 -15.11143 -14.82386 -14.73653 -14.35786 -14.26183 -14.00754 -13.97105 -13.85310 -13.79144 -13.45357 -13.34597 -12.91192 -12.61990 -12.27971 -11.69045 -11.61628 -11.54394 -11.44635 -11.35101 -11.02344 -10.75989 -10.62288 -10.08512 -9.81708 -9.74402 -9.47265 -8.91598 -8.82809 -6.91765 -5.80255 -3.12486 2.44124 2.57219 3.12725 3.37505 3.41726 3.42855 3.57591 3.79378 3.80151 4.37376 4.42447 4.55736 4.74209 4.94802 5.13244 5.19508 5.21314 5.26310 5.32281 5.49710 5.60495 5.62438 5.77725 5.94070 6.01117 6.18692 6.30971 6.49003 6.58621 6.69139 7.17127 7.30496 7.50289 7.52952 7.94582 8.19149 9.01317 9.67583 10.56152 11.36870 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.031988 B = 0.002669 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.117909 B =10488.562410 C =11066.271428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.117 4.117 3 H 0.123 0.877 4 C -0.146 4.146 5 C 0.517 3.483 6 O -0.543 6.543 7 N -0.718 5.718 8 C 0.130 3.870 9 C -0.154 4.154 10 C 0.168 3.832 11 N -0.613 5.613 12 C -0.225 4.225 13 H 0.079 0.921 14 C -0.008 4.008 15 N -0.922 5.922 16 Si 0.913 3.087 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.284 1.284 20 C 0.129 3.871 21 C 0.453 3.547 22 F -0.183 7.183 23 F -0.183 7.183 24 F -0.183 7.183 25 H 0.066 0.934 26 H 0.099 0.901 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.404 0.596 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.027 0.973 35 H 0.072 0.928 36 H 0.254 0.746 37 H 0.045 0.955 38 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.205 -2.284 18.605 20.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.137 4.137 3 H 0.141 0.859 4 C -0.186 4.186 5 C 0.303 3.697 6 O -0.422 6.422 7 N -0.369 5.369 8 C 0.006 3.994 9 C -0.174 4.174 10 C 0.043 3.957 11 N -0.339 5.339 12 C -0.352 4.352 13 H 0.097 0.903 14 C -0.204 4.204 15 N -0.569 5.569 16 Si 0.743 3.257 17 H -0.212 1.212 18 H -0.215 1.215 19 H -0.211 1.211 20 C 0.002 3.998 21 C 0.399 3.601 22 F -0.165 7.165 23 F -0.164 7.164 24 F -0.165 7.165 25 H 0.085 0.915 26 H 0.118 0.882 27 H 0.082 0.918 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.238 0.762 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.360 -1.620 18.456 20.757 hybrid contribution 1.006 -0.539 -0.725 1.352 sum -8.354 -2.159 17.731 19.719 Atomic orbital electron populations 1.22008 0.90948 1.03369 1.05250 1.22160 1.00314 1.01749 0.89454 0.85883 1.21725 1.04185 1.00784 0.91948 1.20152 0.79543 0.85571 0.84473 1.90678 1.40395 1.24477 1.86605 1.46050 1.57009 1.27939 1.05871 1.21480 0.99521 0.95476 0.82937 1.23816 1.01148 0.99910 0.92508 1.22356 0.91283 0.98560 0.83492 1.45969 1.03274 1.82652 1.01993 1.18989 0.91445 1.41809 0.82983 0.90293 1.24780 0.96032 1.02295 0.97318 1.69792 1.06295 1.55091 1.25754 0.86195 0.78442 0.78006 0.83082 1.21183 1.21536 1.21069 1.22483 0.89734 0.96704 0.90892 1.20671 0.75445 0.77705 0.86318 1.93191 1.30073 1.96416 1.96801 1.93174 1.88474 1.80759 1.53991 1.93170 1.88453 1.38003 1.96832 0.91480 0.88242 0.91818 0.87535 0.87437 0.76176 0.91855 0.91291 0.89185 0.95512 0.90959 0.93588 0.93661 0.94668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 8.69 37.16 0.32 -1.03 16 2 C -0.12 -1.02 2.01 -90.62 -0.18 -1.20 16 3 H 0.12 1.11 7.96 -51.92 -0.41 0.70 16 4 C -0.15 -1.23 4.93 -27.88 -0.14 -1.37 16 5 C 0.52 6.07 7.55 -10.98 -0.08 5.98 16 6 O -0.54 -8.03 13.97 5.55 0.08 -7.95 16 7 N -0.72 -8.53 5.56 -60.29 -0.33 -8.86 16 8 C 0.13 1.85 5.51 -4.04 -0.02 1.82 16 9 C -0.15 -2.60 3.93 -89.70 -0.35 -2.95 16 10 C 0.17 3.74 7.08 -2.84 -0.02 3.72 16 11 N -0.61 -15.37 3.70 -177.70 -0.66 -16.02 16 12 C -0.22 -6.24 10.70 -15.06 -0.16 -6.41 16 13 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 14 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 15 N -0.92 -26.88 11.39 55.49 0.63 -26.25 16 16 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C 0.13 2.50 8.51 -2.97 -0.03 2.48 16 21 C 0.45 4.11 2.69 37.15 0.10 4.21 16 22 F -0.18 -1.80 16.71 2.25 0.04 -1.77 16 23 F -0.18 -1.78 16.80 2.25 0.04 -1.74 16 24 F -0.18 -1.70 16.37 2.25 0.04 -1.67 16 25 H 0.07 0.52 7.80 -51.93 -0.41 0.12 16 26 H 0.10 1.02 5.95 -51.93 -0.31 0.72 16 27 H 0.06 0.49 7.80 -51.93 -0.41 0.08 16 28 H 0.11 0.72 7.94 -51.93 -0.41 0.31 16 29 H 0.11 0.80 7.66 -51.93 -0.40 0.40 16 30 H 0.40 4.05 8.47 -40.82 -0.35 3.71 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.09 7.88 -51.93 -0.41 0.68 16 33 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.03 0.62 7.92 -51.93 -0.41 0.21 16 35 H 0.07 1.76 7.17 -51.93 -0.37 1.39 16 36 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 327.69 15.07 4.94 4.94 Total: -1.00 -31.71 327.69 -6.03 -37.74 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -5.12 Total: -0.23 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -0.66 Total: 4.94 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.36 Total: -51.14 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.08 Total: -7.95 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.11 Total: -5.18 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.71 -6.03 -37.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753409099.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.396 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds