Wall clock time and date at job start Tue Mar 31 2020 07:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99928 * 179.72352 * 5 4 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 C 1.52997 * 109.47555 * 180.02562 * 8 7 5 10 10 C 1.53940 * 113.74661 * 273.74540 * 9 8 7 11 11 N 1.47811 * 86.03963 * 222.08318 * 10 9 8 12 12 C 1.36935 * 134.45839 * 204.64395 * 11 10 9 13 13 H 1.07993 * 120.00164 * 179.86283 * 12 11 10 14 14 C 1.38821 * 119.99573 * 359.86686 * 12 11 10 15 15 N 1.31614 * 120.00428 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99605 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47185 * 59.99675 * 16 14 12 18 18 H 1.48497 * 109.46995 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47267 * 299.99460 * 16 14 12 20 20 C 1.47576 * 91.04984 * 24.54636 * 11 10 9 21 21 C 1.52994 * 109.47216 * 119.99968 * 2 1 3 22 22 F 1.39899 * 109.47251 * 179.97438 * 21 2 1 23 23 F 1.39895 * 109.47455 * 300.00347 * 21 2 1 24 24 F 1.39905 * 109.47173 * 60.00225 * 21 2 1 25 25 H 1.09001 * 109.47260 * 299.99678 * 1 2 3 26 26 H 1.09001 * 109.47309 * 59.99648 * 1 2 3 27 27 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 29 29 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 30 30 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 31 31 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 32 32 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 33 33 H 1.09001 * 112.93896 * 45.33437 * 9 8 7 34 34 H 1.09001 * 113.76743 * 336.34703 * 10 9 8 35 35 H 1.09003 * 113.76981 * 107.73966 * 10 9 8 36 36 H 0.97001 * 120.00495 * 180.02562 * 15 14 12 37 37 H 1.09001 * 113.77452 * 221.15534 * 20 11 10 38 38 H 1.09003 * 113.77334 * 89.75519 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 8 1.0116 1.0875 -2.3633 7 7 1.9897 -0.3885 -3.6999 8 6 1.6073 0.3712 -4.8927 9 6 2.1216 -0.3473 -6.1417 10 6 3.5680 0.0216 -6.5177 11 7 3.0865 0.0598 -7.9146 12 6 3.6807 -0.0957 -9.1385 13 1 3.0895 -0.0212 -10.0392 14 6 5.0430 -0.3494 -9.2214 15 7 5.7636 -0.4398 -8.1238 16 14 5.8537 -0.5608 -10.8910 17 1 5.6698 0.6768 -11.6909 18 1 7.3043 -0.8201 -10.7075 19 1 5.2317 -1.7067 -11.6018 20 6 1.7085 0.3302 -7.4609 21 6 2.0400 -0.7212 1.2492 22 9 3.4390 -0.7217 1.2489 23 9 1.5737 -0.0618 2.3915 24 9 1.5737 -2.0403 1.2492 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6054 -1.7197 -1.2952 29 1 3.1263 -0.7993 -1.2057 30 1 2.4935 -1.2124 -3.7906 31 1 0.5212 0.4500 -4.9405 32 1 2.0421 1.3695 -4.8424 33 1 1.9334 -1.4208 -6.1220 34 1 3.8873 0.9915 -6.1364 35 1 4.2890 -0.7722 -6.3218 36 1 6.7156 -0.6167 -8.1817 37 1 0.9474 -0.2175 -8.0166 38 1 1.4803 1.3910 -7.3572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753409099.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:39 Heat of formation + Delta-G solvation = -171.582189 kcal Electronic energy + Delta-G solvation = -23585.221158 eV Core-core repulsion = 19434.197611 eV Total energy + Delta-G solvation = -4151.023547 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.09719 -48.58849 -48.55217 -40.97041 -39.67138 -36.28972 -35.51584 -34.16364 -30.94096 -29.17929 -27.41984 -26.93525 -26.50393 -23.84199 -22.52860 -21.47539 -20.53012 -19.55267 -19.31649 -18.73726 -18.55530 -17.47332 -17.07625 -16.95265 -16.60937 -15.99566 -15.61690 -15.51172 -15.30923 -15.00648 -14.86913 -14.79206 -14.71904 -14.66359 -14.33261 -14.00801 -13.98980 -13.30946 -13.19400 -13.06957 -12.83724 -12.55841 -12.35677 -12.32513 -12.23765 -12.20315 -11.81460 -11.57235 -11.24884 -10.87359 -10.78496 -9.99139 -8.90774 -7.90256 -5.23101 1.46035 1.48966 1.55089 1.65182 1.69515 2.23417 2.48198 2.84451 3.04442 3.08721 3.30988 3.41238 3.63968 3.75580 3.88562 3.98390 4.12514 4.27198 4.39161 4.56815 4.57573 4.63837 4.80261 4.82712 4.88522 4.92582 4.96478 5.12711 5.26323 5.28124 5.49361 5.57096 5.67884 5.95509 6.59308 6.93250 7.26768 7.61688 8.57426 9.26310 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.031988 B = 0.002669 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.117909 B =10488.562410 C =11066.271428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 H 0.118 0.882 4 C -0.140 4.140 5 C 0.518 3.482 6 O -0.574 6.574 7 N -0.716 5.716 8 C 0.143 3.857 9 C -0.114 4.114 10 C 0.165 3.835 11 N -0.647 5.647 12 C -0.238 4.238 13 H 0.082 0.918 14 C -0.067 4.067 15 N -0.952 5.952 16 Si 0.978 3.022 17 H -0.280 1.280 18 H -0.294 1.294 19 H -0.275 1.275 20 C 0.125 3.875 21 C 0.458 3.542 22 F -0.188 7.188 23 F -0.187 7.187 24 F -0.182 7.182 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.130 0.870 29 H 0.121 0.879 30 H 0.414 0.586 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.105 0.895 34 H 0.011 0.989 35 H 0.045 0.955 36 H 0.248 0.752 37 H 0.061 0.939 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.209 -3.101 18.962 21.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.135 4.135 3 H 0.136 0.864 4 C -0.179 4.179 5 C 0.305 3.695 6 O -0.455 6.455 7 N -0.367 5.367 8 C 0.018 3.982 9 C -0.134 4.134 10 C 0.040 3.960 11 N -0.373 5.373 12 C -0.366 4.366 13 H 0.100 0.900 14 C -0.260 4.260 15 N -0.601 5.601 16 Si 0.806 3.194 17 H -0.206 1.206 18 H -0.220 1.220 19 H -0.200 1.200 20 C 0.000 4.000 21 C 0.404 3.596 22 F -0.169 7.169 23 F -0.168 7.168 24 F -0.164 7.164 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.148 0.852 29 H 0.139 0.861 30 H 0.251 0.749 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.123 0.877 34 H 0.029 0.971 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.395 -2.449 18.824 21.642 hybrid contribution 1.265 -0.249 -0.807 1.521 sum -9.130 -2.698 18.018 20.378 Atomic orbital electron populations 1.21956 0.90760 1.03884 1.04617 1.22126 1.00439 1.01505 0.89393 0.86412 1.21736 1.05159 1.01163 0.89881 1.20635 0.78619 0.85226 0.84994 1.90676 1.41781 1.25971 1.87033 1.45960 1.57191 1.28164 1.05376 1.21164 0.99951 0.94437 0.82657 1.23395 0.96507 1.00680 0.92782 1.22284 0.93890 0.96921 0.82951 1.46412 1.05904 1.82949 1.02062 1.19401 0.91962 1.40775 0.84503 0.89997 1.25605 0.96744 1.02902 1.00725 1.69976 1.05993 1.56542 1.27594 0.85168 0.76955 0.78169 0.79135 1.20649 1.22020 1.20048 1.22702 0.87658 0.97719 0.91956 1.20636 0.75163 0.77630 0.86187 1.93186 1.30476 1.96434 1.96810 1.93168 1.88506 1.80874 1.54284 1.93173 1.88416 1.37976 1.96822 0.91029 0.89912 0.90726 0.85202 0.86079 0.74929 0.90467 0.92944 0.87701 0.97108 0.93686 0.94274 0.92056 0.93645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 8.69 71.98 0.63 -1.77 16 2 C -0.11 -1.80 2.01 -10.80 -0.02 -1.82 16 3 H 0.12 2.00 7.96 -2.38 -0.02 1.98 16 4 C -0.14 -2.03 4.93 29.85 0.15 -1.88 16 5 C 0.52 11.23 7.55 87.66 0.66 11.89 16 6 O -0.57 -16.33 13.97 -3.04 -0.04 -16.37 16 7 N -0.72 -15.60 5.56 -463.06 -2.57 -18.17 16 8 C 0.14 3.81 5.51 86.38 0.48 4.29 16 9 C -0.11 -3.68 3.93 -10.14 -0.04 -3.72 16 10 C 0.16 7.39 7.08 86.44 0.61 8.00 16 11 N -0.65 -32.40 3.70 -716.12 -2.65 -35.05 16 12 C -0.24 -13.25 10.70 84.04 0.90 -12.35 16 13 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 14 C -0.07 -3.77 5.50 84.87 0.47 -3.30 16 15 N -0.95 -56.61 11.39 21.65 0.25 -56.36 16 16 Si 0.98 45.28 29.55 68.60 2.03 47.31 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 20 C 0.12 4.68 8.51 86.49 0.74 5.42 16 21 C 0.46 7.48 2.69 71.98 0.19 7.67 16 22 F -0.19 -3.38 16.71 44.97 0.75 -2.62 16 23 F -0.19 -3.38 16.80 44.97 0.76 -2.62 16 24 F -0.18 -2.98 16.37 44.97 0.74 -2.25 16 25 H 0.07 1.02 7.80 -2.39 -0.02 1.00 16 26 H 0.08 1.62 5.95 -2.39 -0.01 1.60 16 27 H 0.07 0.97 7.80 -2.39 -0.02 0.95 16 28 H 0.13 1.32 7.94 -2.38 -0.02 1.30 16 29 H 0.12 1.49 7.66 -2.39 -0.02 1.47 16 30 H 0.41 7.38 8.47 -92.71 -0.79 6.59 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 32 H 0.05 1.61 7.88 -2.39 -0.02 1.59 16 33 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 34 H 0.01 0.53 7.92 -2.39 -0.02 0.51 16 35 H 0.04 2.25 7.17 -2.39 -0.02 2.23 16 36 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 37 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.05 1.64 8.10 -2.39 -0.02 1.62 16 Total: -1.00 -68.47 327.69 4.31 -64.16 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.30 Total: 9.55 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 4.76 Total: 12.43 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -4.98 Total: -109.58 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.04 Total: -16.37 kcal Atomic # 9 Polarization: -9.74 SS G_CDS: 2.24 Total: -7.50 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -68.47 4.31 -64.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753409099.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.420 kcal (2) G-P(sol) polarization free energy of solvation -68.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds