Wall clock time and date at job start Tue Mar 31 2020 07:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35131 * 125.61553 * 2 1 4 4 C 1.40370 * 107.11322 * 180.02562 * 3 2 1 5 5 C 1.36544 * 106.70848 * 359.97438 * 4 3 2 6 6 C 1.46655 * 125.98783 * 179.97438 * 5 4 3 7 7 O 1.21697 * 120.00014 * 359.97438 * 6 5 4 8 8 N 1.34770 * 119.99893 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99856 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47377 * 180.02562 * 9 8 6 11 11 H 1.08999 * 109.51331 * 304.90036 * 10 9 8 12 12 C 1.52874 * 109.58764 * 184.88093 * 10 9 8 13 13 N 1.47146 * 108.61038 * 187.92443 * 12 10 9 14 14 C 1.36938 * 120.98166 * 230.49961 * 13 12 10 15 15 H 1.08004 * 120.00362 * 26.46603 * 14 13 12 16 16 C 1.38811 * 120.00369 * 206.46273 * 14 13 12 17 17 N 1.31624 * 119.99894 * 16.40694 * 16 14 13 18 18 Si 1.86793 * 120.00437 * 196.13282 * 16 14 13 19 19 H 1.48501 * 109.47251 * 90.00080 * 18 16 14 20 20 H 1.48504 * 109.47315 * 209.99870 * 18 16 14 21 21 H 1.48503 * 109.47374 * 330.00111 * 18 16 14 22 22 C 1.47152 * 118.03553 * 50.22601 * 13 12 10 23 23 C 1.53291 * 108.38463 * 309.71610 * 22 13 12 24 24 O 1.42958 * 109.22268 * 52.30270 * 23 22 13 25 25 O 1.33931 * 125.61891 * 180.29877 * 2 1 3 26 26 H 1.09000 * 109.47555 * 89.99412 * 1 2 3 27 27 H 1.08993 * 109.47052 * 209.99777 * 1 2 3 28 28 H 1.09004 * 109.46883 * 329.99614 * 1 2 3 29 29 H 1.08002 * 126.44548 * 0.02742 * 3 2 1 30 30 H 1.08002 * 126.64423 * 180.02562 * 4 3 2 31 31 H 0.96992 * 120.00266 * 0.02562 * 8 6 5 32 32 H 1.09007 * 109.47306 * 60.00172 * 9 8 6 33 33 H 1.09002 * 109.47255 * 300.00314 * 9 8 6 34 34 H 1.09004 * 109.61801 * 68.10492 * 12 10 9 35 35 H 1.09002 * 109.52448 * 307.69194 * 12 10 9 36 36 H 0.97001 * 120.00132 * 179.97438 * 17 16 14 37 37 H 1.08995 * 109.68009 * 69.44637 * 22 13 12 38 38 H 1.08998 * 109.67837 * 189.95158 * 22 13 12 39 39 H 1.09002 * 109.50962 * 172.22809 * 23 22 13 40 40 H 1.08996 * 109.51452 * 292.32644 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6251 0.6531 -0.0006 5 6 3.5823 -0.7117 -0.0004 6 6 4.7414 -1.6102 -0.0013 7 8 5.8680 -1.1500 -0.0029 8 7 4.5589 -2.9455 -0.0004 9 6 5.7168 -3.8430 -0.0020 10 6 5.2362 -5.2955 -0.0012 11 1 4.5649 -5.4565 0.8424 12 6 6.4378 -6.2329 0.1198 13 7 5.9753 -7.6164 -0.0728 14 6 6.3044 -8.6005 0.8209 15 1 6.5178 -8.3471 1.8489 16 6 6.3635 -9.9237 0.4057 17 7 6.4263 -10.2085 -0.8779 18 14 6.3618 -11.3000 1.6686 19 1 4.9630 -11.7109 1.9511 20 1 7.1208 -12.4605 1.1372 21 1 7.0002 -10.8228 2.9217 22 6 5.1437 -7.9101 -1.2507 23 6 4.0006 -6.8900 -1.3020 24 8 4.5438 -5.5701 -1.2215 25 8 2.2870 -1.0887 -0.0057 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.9613 2.1261 0.0004 30 1 4.5113 1.2703 -0.0004 31 1 3.6610 -3.3122 0.0005 32 1 6.3203 -3.6591 0.8870 33 1 6.3173 -3.6598 -0.8930 34 1 6.8846 -6.1294 1.1087 35 1 7.1738 -5.9821 -0.6441 36 1 6.4680 -11.1332 -1.1680 37 1 5.7472 -7.8312 -2.1549 38 1 4.7346 -8.9171 -1.1693 39 1 3.4542 -7.0024 -2.2385 40 1 3.3247 -7.0582 -0.4637 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035280690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:23 Heat of formation + Delta-G solvation = -43.556614 kcal Electronic energy + Delta-G solvation = -23294.240781 eV Core-core repulsion = 19690.625580 eV Total energy + Delta-G solvation = -3603.615201 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.89996 -39.56275 -38.43037 -35.04633 -34.34900 -33.48824 -32.30161 -31.58099 -30.72002 -28.11609 -27.12462 -25.36700 -23.24810 -22.59419 -21.81936 -21.60928 -20.40540 -19.69326 -18.37627 -16.93612 -16.71007 -16.10989 -15.94504 -15.68269 -15.01872 -14.74776 -14.41427 -14.36212 -13.81877 -13.57223 -13.47170 -13.35034 -13.20526 -13.16949 -13.02961 -12.75567 -12.40077 -12.24433 -11.60161 -11.14362 -10.89194 -10.76314 -10.45423 -10.34562 -10.26851 -10.24753 -10.01009 -9.69466 -9.16587 -9.09547 -8.66255 -8.57617 -6.78597 -5.86965 -3.31456 0.88437 2.10413 2.41279 3.11449 3.16505 3.32733 3.39718 3.41114 4.19181 4.34185 4.40525 4.68040 4.69070 4.99200 5.05204 5.08685 5.27690 5.30393 5.42202 5.44298 5.48176 5.60175 5.72184 5.77119 5.80997 5.98813 6.11592 6.14029 6.23459 6.34037 6.39683 6.45455 6.66543 6.72362 7.07290 7.44799 7.49187 7.68104 7.82171 8.04486 8.30622 9.08485 9.70922 10.27776 11.21248 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.029229 B = 0.002941 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.736446 B = 9519.536940 C = 9865.391643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.017 3.983 3 C -0.225 4.225 4 C -0.120 4.120 5 C -0.075 4.075 6 C 0.600 3.400 7 O -0.525 6.525 8 N -0.707 5.707 9 C 0.129 3.871 10 C 0.064 3.936 11 H 0.059 0.941 12 C 0.122 3.878 13 N -0.594 5.594 14 C -0.256 4.256 15 H 0.069 0.931 16 C 0.003 3.997 17 N -0.903 5.903 18 Si 0.907 3.093 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.278 1.278 22 C 0.139 3.861 23 C 0.039 3.961 24 O -0.390 6.390 25 O -0.161 6.161 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.155 0.845 30 H 0.160 0.840 31 H 0.408 0.592 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.031 0.969 36 H 0.255 0.745 37 H 0.029 0.971 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.970 18.929 1.294 22.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.036 4.036 3 C -0.244 4.244 4 C -0.141 4.141 5 C -0.127 4.127 6 C 0.385 3.615 7 O -0.404 6.404 8 N -0.357 5.357 9 C 0.006 3.994 10 C 0.004 3.996 11 H 0.077 0.923 12 C -0.005 4.005 13 N -0.318 5.318 14 C -0.385 4.385 15 H 0.087 0.913 16 C -0.196 4.196 17 N -0.547 5.547 18 Si 0.736 3.264 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.203 1.203 22 C 0.014 3.986 23 C -0.038 4.038 24 O -0.309 6.309 25 O -0.057 6.057 26 H 0.105 0.895 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.173 0.827 30 H 0.178 0.822 31 H 0.243 0.757 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.047 0.953 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.211 18.842 1.077 21.951 hybrid contribution -0.341 -1.012 0.693 1.273 sum -11.552 17.830 1.770 21.319 Atomic orbital electron populations 1.20416 0.84581 1.04496 1.04009 1.22831 0.94323 0.84133 1.02314 1.21583 0.92368 0.99754 1.10700 1.21942 0.98611 0.92947 1.00609 1.22122 0.81853 0.94695 1.14059 1.16543 0.85989 0.81637 0.77281 1.90881 1.21992 1.76207 1.51318 1.45875 1.11344 1.05147 1.73368 1.21525 0.87626 0.86956 1.03335 1.22730 0.96242 0.92764 0.87818 0.92284 1.21354 0.92985 0.86171 1.00019 1.44048 1.57373 1.03235 1.27126 1.19209 1.42928 0.86372 0.90029 0.91306 1.25063 1.00424 0.98166 0.95967 1.70034 1.53322 1.18124 1.13201 0.86225 0.77672 0.81736 0.80737 1.21370 1.21639 1.20346 1.21444 0.90106 0.97697 0.89372 1.23331 0.96979 0.83297 1.00238 1.87795 1.72935 1.32322 1.37855 1.84022 1.16033 1.34950 1.70711 0.89543 0.90071 0.88986 0.82711 0.82222 0.75689 0.89653 0.90193 0.91684 0.95147 0.93464 0.95302 0.88776 0.90001 0.94082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.41 36.00 0.37 -0.03 16 2 C 0.02 0.15 7.31 -35.41 -0.26 -0.11 16 3 C -0.22 -2.06 10.77 -39.88 -0.43 -2.49 16 4 C -0.12 -1.38 10.62 -39.39 -0.42 -1.80 16 5 C -0.08 -0.99 7.13 -36.80 -0.26 -1.25 16 6 C 0.60 9.02 7.79 -12.87 -0.10 8.92 16 7 O -0.53 -9.27 16.86 5.19 0.09 -9.18 16 8 N -0.71 -10.07 5.50 -61.62 -0.34 -10.41 16 9 C 0.13 1.97 5.34 -4.04 -0.02 1.94 16 10 C 0.06 1.12 2.80 -26.80 -0.07 1.05 16 11 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 12 C 0.12 2.52 6.00 -3.75 -0.02 2.50 16 13 N -0.59 -14.79 3.05 -172.09 -0.53 -15.31 16 14 C -0.26 -6.92 9.65 -15.06 -0.15 -7.06 16 15 H 0.07 1.81 7.88 -52.48 -0.41 1.40 16 16 C 0.00 0.07 4.95 -17.43 -0.09 -0.01 16 17 N -0.90 -25.85 11.15 55.49 0.62 -25.23 16 18 Si 0.91 21.32 29.58 -169.99 -5.03 16.30 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C 0.14 3.30 5.44 -3.54 -0.02 3.28 16 23 C 0.04 0.75 6.98 37.31 0.26 1.01 16 24 O -0.39 -7.34 10.33 -35.23 -0.36 -7.71 16 25 O -0.16 -1.92 10.40 5.01 0.05 -1.87 16 26 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.41 5.35 8.23 -40.82 -0.34 5.02 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.06 1.27 7.96 -51.93 -0.41 0.86 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 2.44 6.16 -51.93 -0.32 2.12 16 39 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 339.47 15.07 5.12 5.12 Total: -1.00 -32.10 339.47 -7.28 -39.37 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.69 Total: 2.97 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -1.20 Total: 5.95 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.25 Total: -50.96 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.22 Total: -18.75 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.10 -7.28 -39.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035280690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.182 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds