Wall clock time and date at job start Tue Mar 31 2020 08:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46897 * 109.47199 * 2 1 4 4 C 1.46899 * 110.99862 * 199.70999 * 3 2 1 5 5 C 1.50703 * 109.46880 * 66.04735 * 4 3 2 6 6 H 1.07993 * 120.00068 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99619 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00275 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99745 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47522 * 89.99852 * 9 7 5 11 11 H 1.48500 * 109.47127 * 209.99673 * 9 7 5 12 12 H 1.48498 * 109.47171 * 329.99588 * 9 7 5 13 13 C 1.46898 * 110.99980 * 75.75547 * 3 2 1 14 14 C 1.50707 * 109.47215 * 199.76416 * 13 3 2 15 15 C 1.38286 * 119.93900 * 84.41621 * 14 13 3 16 16 C 1.38127 * 120.04986 * 180.02562 * 15 14 13 17 17 C 1.38750 * 119.94707 * 359.97438 * 16 15 14 18 18 O 1.35898 * 120.05907 * 179.97438 * 17 16 15 19 19 C 1.42904 * 116.99554 * 359.97438 * 18 17 16 20 20 C 1.38715 * 119.88742 * 0.25014 * 17 16 15 21 21 N 1.48003 * 120.02920 * 179.74236 * 20 17 16 22 22 O 1.21802 * 120.00118 * 180.02562 * 21 20 17 23 23 O 1.21800 * 119.99769 * 0.02562 * 21 20 17 24 24 C 1.38164 * 119.94234 * 359.52445 * 20 17 16 25 25 H 1.08997 * 109.47436 * 294.86275 * 1 2 3 26 26 H 1.08999 * 109.46821 * 54.85824 * 1 2 3 27 27 H 1.09001 * 109.47271 * 174.85843 * 1 2 3 28 28 H 1.08992 * 109.46904 * 239.99499 * 2 1 3 29 29 H 1.09002 * 109.46714 * 119.99788 * 2 1 3 30 30 H 1.08998 * 109.46671 * 186.04380 * 4 3 2 31 31 H 1.08999 * 109.47265 * 306.04290 * 4 3 2 32 32 H 0.96999 * 119.99971 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47378 * 79.76854 * 13 3 2 34 34 H 1.08998 * 109.47383 * 319.76651 * 13 3 2 35 35 H 1.07993 * 119.97768 * 0.02562 * 15 14 13 36 36 H 1.07998 * 120.02595 * 179.97438 * 16 15 14 37 37 H 1.08991 * 109.47314 * 299.99626 * 19 18 17 38 38 H 1.09002 * 109.47485 * 60.00337 * 19 18 17 39 39 H 1.09006 * 109.46593 * 180.02562 * 19 18 17 40 40 H 1.08001 * 119.96844 * 180.23142 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4124 1.4509 -0.4625 5 6 3.4797 1.0468 -1.9128 6 1 2.5782 0.7685 -2.4382 7 6 4.6924 1.0315 -2.5686 8 7 5.7904 1.3700 -1.9286 9 14 4.7758 0.5313 -4.3664 10 1 4.6092 1.7330 -5.2228 11 1 6.0924 -0.0964 -4.6451 12 1 3.6920 -0.4403 -4.6607 13 6 1.8770 1.9938 1.3292 14 6 1.9165 3.4949 1.2012 15 6 0.7630 4.1916 0.8910 16 6 0.7966 5.5674 0.7725 17 6 1.9889 6.2502 0.9655 18 8 2.0248 7.6037 0.8490 19 6 0.7972 8.2596 0.5250 20 6 3.1456 5.5485 1.2719 21 7 4.4203 6.2732 1.4728 22 8 5.4357 5.6565 1.7414 23 8 4.4539 7.4864 1.3695 24 6 3.1057 4.1729 1.3939 25 1 -0.3634 0.4321 0.9324 26 1 -0.3633 0.5915 -0.8404 27 1 -0.3634 -1.0235 -0.0921 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.7842 2.4695 -0.3515 31 1 4.0253 0.7736 0.1322 32 1 6.6435 1.3595 -2.3901 33 1 2.6939 1.6623 1.9703 34 1 0.9258 1.6914 1.7672 35 1 -0.1649 3.6597 0.7413 36 1 -0.1044 6.1111 0.5299 37 1 0.4312 7.8928 -0.4339 38 1 0.0587 8.0518 1.2994 39 1 0.9654 9.3348 0.4620 40 1 4.0052 3.6264 1.6362 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454495.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:53 Heat of formation + Delta-G solvation = -11.146320 kcal Electronic energy + Delta-G solvation = -24015.246139 eV Core-core repulsion = 20413.036354 eV Total energy + Delta-G solvation = -3602.209785 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.81297 -40.22284 -38.36412 -36.55471 -36.01815 -32.74835 -32.06504 -31.48811 -29.70797 -28.06322 -26.99970 -26.08334 -24.58933 -22.65021 -22.28606 -21.56599 -20.04918 -18.87386 -18.26860 -17.72042 -17.16042 -16.56033 -16.25861 -15.92894 -15.20329 -14.73620 -14.57953 -14.54513 -14.15093 -13.87201 -13.41103 -12.87047 -12.59564 -12.30840 -12.14697 -11.79787 -11.76478 -11.51259 -11.38028 -11.15222 -11.09542 -11.01035 -10.74062 -10.66629 -10.64636 -10.54657 -10.24079 -9.87947 -9.51056 -9.23698 -8.47671 -8.43178 -7.41715 -6.05609 -4.07892 0.20904 1.09650 1.67783 1.79913 2.86916 3.29725 3.36134 3.37755 3.40045 4.38104 4.40334 4.50050 4.74369 4.87906 4.91399 4.99793 5.05744 5.07432 5.26248 5.29777 5.41567 5.57157 5.67886 5.72311 5.83297 5.89186 5.94466 5.99908 6.23672 6.33297 6.45172 6.59046 6.67001 6.68808 7.00125 7.18239 7.25102 7.72960 7.98937 8.09792 8.10855 8.44505 8.98860 9.56436 11.04964 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.012748 B = 0.005219 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.913317 B = 5363.355395 C = 6403.632203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 N -0.533 5.533 4 C 0.190 3.810 5 C -0.512 4.512 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.893 5.893 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.091 3.909 14 C -0.092 4.092 15 C -0.007 4.007 16 C -0.218 4.218 17 C 0.185 3.815 18 O -0.286 6.286 19 C 0.021 3.979 20 C -0.078 4.078 21 N 0.040 4.960 22 O -0.175 6.175 23 O -0.153 6.153 24 C -0.005 4.005 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.020 0.980 30 H 0.032 0.968 31 H -0.007 1.007 32 H 0.263 0.737 33 H 0.041 0.959 34 H 0.077 0.923 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.107 0.893 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.837 7.230 7.760 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 N -0.258 5.258 4 C 0.065 3.935 5 C -0.550 4.550 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.532 5.532 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 C -0.037 4.037 14 C -0.094 4.094 15 C -0.026 4.026 16 C -0.237 4.237 17 C 0.136 3.864 18 O -0.197 6.197 19 C -0.074 4.074 20 C -0.163 4.163 21 N 0.557 4.443 22 O -0.386 6.386 23 O -0.370 6.370 24 C -0.024 4.024 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.039 0.961 30 H 0.050 0.950 31 H 0.010 0.990 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.160 0.840 36 H 0.164 0.836 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.125 0.875 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.345 7.286 7.333 17.681 hybrid contribution 0.807 -0.476 -0.573 1.098 sum -13.537 6.810 6.760 16.593 Atomic orbital electron populations 1.21808 0.96594 1.00526 1.01233 1.21993 0.94165 0.89851 1.01297 1.62185 1.25950 1.17050 1.20565 1.19816 0.81093 0.97002 0.95625 1.21089 0.93281 1.45303 0.95342 0.91876 1.24987 0.95667 0.95510 0.98334 1.69945 0.98517 1.48093 1.36642 0.86532 0.77321 0.78692 0.85071 1.20701 1.21228 1.19855 1.20995 1.01188 0.88616 0.92917 1.19774 0.91568 0.96945 1.01093 1.21201 0.98867 0.92590 0.89924 1.21210 0.96565 0.95682 1.10215 1.18598 0.91944 0.83764 0.92122 1.86393 1.34786 1.15096 1.83438 1.23232 0.85191 0.98448 1.00487 1.20448 0.82875 0.92505 1.20432 1.43313 1.02270 1.01066 0.97678 1.94562 1.23087 1.69207 1.51736 1.94523 1.92362 0.95806 1.54351 1.20947 1.00057 0.89829 0.91599 0.93913 0.92144 0.93263 0.89285 0.96125 0.95040 0.98961 0.92752 0.94054 0.90439 0.83971 0.83559 0.92050 0.92254 0.87486 0.82463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.96 37.16 0.37 -1.59 16 2 C 0.05 0.96 5.51 -3.82 -0.02 0.94 16 3 N -0.53 -10.37 4.34 -237.52 -1.03 -11.40 16 4 C 0.19 4.70 4.54 -4.97 -0.02 4.67 16 5 C -0.51 -13.96 8.23 -34.44 -0.28 -14.25 16 6 H 0.06 1.70 7.31 -52.49 -0.38 1.32 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 9 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.09 1.43 4.94 -4.97 -0.02 1.41 16 14 C -0.09 -1.42 5.04 -104.60 -0.53 -1.94 16 15 C -0.01 -0.09 9.72 -39.60 -0.38 -0.47 16 16 C -0.22 -2.58 9.04 -39.43 -0.36 -2.93 16 17 C 0.18 2.74 6.67 -39.22 -0.26 2.48 16 18 O -0.29 -3.97 8.51 -41.54 -0.35 -4.32 16 19 C 0.02 0.17 9.81 101.05 0.99 1.17 16 20 C -0.08 -1.37 6.87 -79.81 -0.55 -1.92 16 21 N 0.04 0.78 4.45 34.03 0.15 0.93 16 22 O -0.17 -3.65 18.45 -29.46 -0.54 -4.19 16 23 O -0.15 -2.99 17.24 -36.49 -0.63 -3.62 16 24 C 0.00 -0.08 7.91 -39.61 -0.31 -0.40 16 25 H 0.04 0.51 6.89 -51.93 -0.36 0.15 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 1.78 6.58 -51.93 -0.34 1.44 16 29 H 0.02 0.34 8.00 -51.93 -0.42 -0.07 16 30 H 0.03 0.84 6.33 -51.93 -0.33 0.51 16 31 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.04 0.67 7.90 -51.93 -0.41 0.26 16 34 H 0.08 1.00 6.54 -51.93 -0.34 0.66 16 35 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.15 1.20 6.30 -52.49 -0.33 0.87 16 37 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 38 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 39 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.16 2.85 7.54 -52.49 -0.40 2.46 16 LS Contribution 338.45 15.07 5.10 5.10 Total: -1.00 -32.55 338.45 -8.42 -40.97 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -5.35 Total: -2.87 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -1.48 Total: -11.33 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: -0.14 Total: -36.28 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -1.53 Total: -12.14 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.55 -8.42 -40.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454495.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.821 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds