Wall clock time and date at job start Tue Mar 31 2020 08:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46897 * 109.47199 * 2 1 4 4 C 1.46899 * 110.99862 * 199.70999 * 3 2 1 5 5 C 1.50703 * 109.46880 * 66.04735 * 4 3 2 6 6 H 1.07993 * 120.00068 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99619 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00275 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99745 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47522 * 89.99852 * 9 7 5 11 11 H 1.48500 * 109.47127 * 209.99673 * 9 7 5 12 12 H 1.48498 * 109.47171 * 329.99588 * 9 7 5 13 13 C 1.46898 * 110.99980 * 75.75547 * 3 2 1 14 14 C 1.50707 * 109.47215 * 199.76416 * 13 3 2 15 15 C 1.38286 * 119.93900 * 84.41621 * 14 13 3 16 16 C 1.38127 * 120.04986 * 180.02562 * 15 14 13 17 17 C 1.38750 * 119.94707 * 359.97438 * 16 15 14 18 18 O 1.35898 * 120.05907 * 179.97438 * 17 16 15 19 19 C 1.42904 * 116.99554 * 359.97438 * 18 17 16 20 20 C 1.38715 * 119.88742 * 0.25014 * 17 16 15 21 21 N 1.48003 * 120.02920 * 179.74236 * 20 17 16 22 22 O 1.21802 * 120.00118 * 180.02562 * 21 20 17 23 23 O 1.21800 * 119.99769 * 0.02562 * 21 20 17 24 24 C 1.38164 * 119.94234 * 359.52445 * 20 17 16 25 25 H 1.08997 * 109.47436 * 294.86275 * 1 2 3 26 26 H 1.08999 * 109.46821 * 54.85824 * 1 2 3 27 27 H 1.09001 * 109.47271 * 174.85843 * 1 2 3 28 28 H 1.08992 * 109.46904 * 239.99499 * 2 1 3 29 29 H 1.09002 * 109.46714 * 119.99788 * 2 1 3 30 30 H 1.08998 * 109.46671 * 186.04380 * 4 3 2 31 31 H 1.08999 * 109.47265 * 306.04290 * 4 3 2 32 32 H 0.96999 * 119.99971 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47378 * 79.76854 * 13 3 2 34 34 H 1.08998 * 109.47383 * 319.76651 * 13 3 2 35 35 H 1.07993 * 119.97768 * 0.02562 * 15 14 13 36 36 H 1.07998 * 120.02595 * 179.97438 * 16 15 14 37 37 H 1.08991 * 109.47314 * 299.99626 * 19 18 17 38 38 H 1.09002 * 109.47485 * 60.00337 * 19 18 17 39 39 H 1.09006 * 109.46593 * 180.02562 * 19 18 17 40 40 H 1.08001 * 119.96844 * 180.23142 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4124 1.4509 -0.4625 5 6 3.4797 1.0468 -1.9128 6 1 2.5782 0.7685 -2.4382 7 6 4.6924 1.0315 -2.5686 8 7 5.7904 1.3700 -1.9286 9 14 4.7758 0.5313 -4.3664 10 1 4.6092 1.7330 -5.2228 11 1 6.0924 -0.0964 -4.6451 12 1 3.6920 -0.4403 -4.6607 13 6 1.8770 1.9938 1.3292 14 6 1.9165 3.4949 1.2012 15 6 0.7630 4.1916 0.8910 16 6 0.7966 5.5674 0.7725 17 6 1.9889 6.2502 0.9655 18 8 2.0248 7.6037 0.8490 19 6 0.7972 8.2596 0.5250 20 6 3.1456 5.5485 1.2719 21 7 4.4203 6.2732 1.4728 22 8 5.4357 5.6565 1.7414 23 8 4.4539 7.4864 1.3695 24 6 3.1057 4.1729 1.3939 25 1 -0.3634 0.4321 0.9324 26 1 -0.3633 0.5915 -0.8404 27 1 -0.3634 -1.0235 -0.0921 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.7842 2.4695 -0.3515 31 1 4.0253 0.7736 0.1322 32 1 6.6435 1.3595 -2.3901 33 1 2.6939 1.6623 1.9703 34 1 0.9258 1.6914 1.7672 35 1 -0.1649 3.6597 0.7413 36 1 -0.1044 6.1111 0.5299 37 1 0.4312 7.8928 -0.4339 38 1 0.0587 8.0518 1.2994 39 1 0.9654 9.3348 0.4620 40 1 4.0052 3.6264 1.6362 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454495.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:53 Heat of formation + Delta-G solvation = -31.533455 kcal Electronic energy + Delta-G solvation = -24016.130192 eV Core-core repulsion = 20413.036354 eV Total energy + Delta-G solvation = -3603.093838 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.24778 -41.36548 -39.56165 -37.96728 -37.52699 -34.80960 -33.29890 -32.62865 -31.18644 -29.23716 -28.31812 -27.48705 -26.01846 -24.28393 -23.58439 -22.83154 -21.54375 -20.10944 -19.75432 -18.84792 -18.63898 -18.53824 -17.46114 -16.83981 -16.80163 -16.21842 -16.05589 -15.72249 -15.51488 -15.05866 -14.62807 -14.26474 -13.98849 -13.80037 -13.42109 -13.10935 -12.95567 -12.78326 -12.66059 -12.63460 -12.60263 -12.52394 -12.31805 -12.27353 -12.11511 -11.99206 -11.78635 -11.55036 -11.23632 -10.66577 -10.58564 -9.57429 -9.04495 -8.21584 -6.31634 -1.14884 -0.02823 0.32713 0.45475 1.37821 1.38959 1.49994 1.93046 2.23608 2.38409 3.11621 3.25224 3.43643 3.53940 3.74341 3.83593 3.95150 4.25153 4.31447 4.35175 4.39671 4.50136 4.55646 4.65032 4.67086 4.73460 4.81641 4.88846 5.09463 5.12396 5.15781 5.21292 5.29526 5.36079 5.39991 5.53902 5.64406 6.01838 6.05435 6.33269 6.55873 6.60799 6.86090 7.38233 8.89102 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.012748 B = 0.005219 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.913317 B = 5363.355395 C = 6403.632203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.051 3.949 3 N -0.531 5.531 4 C 0.205 3.795 5 C -0.518 4.518 6 H 0.067 0.933 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.965 3.035 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.257 1.257 13 C 0.092 3.908 14 C -0.105 4.105 15 C 0.012 3.988 16 C -0.198 4.198 17 C 0.189 3.811 18 O -0.310 6.310 19 C 0.007 3.993 20 C -0.109 4.109 21 N 0.041 4.959 22 O -0.238 6.238 23 O -0.142 6.142 24 C -0.027 4.027 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.024 0.976 30 H 0.004 0.996 31 H -0.043 1.043 32 H 0.262 0.738 33 H 0.026 0.974 34 H 0.121 0.879 35 H 0.185 0.815 36 H 0.197 0.803 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.124 0.876 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.721 7.673 6.869 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.077 4.077 3 N -0.255 5.255 4 C 0.079 3.921 5 C -0.557 4.557 6 H 0.085 0.915 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.790 3.210 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.181 1.181 13 C -0.036 4.036 14 C -0.106 4.106 15 C -0.006 4.006 16 C -0.216 4.216 17 C 0.139 3.861 18 O -0.221 6.221 19 C -0.087 4.087 20 C -0.194 4.194 21 N 0.552 4.448 22 O -0.435 6.435 23 O -0.366 6.366 24 C -0.047 4.047 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.022 0.978 31 H -0.026 1.026 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.139 0.861 35 H 0.203 0.797 36 H 0.214 0.786 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.142 0.858 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.189 7.658 6.473 21.651 hybrid contribution 2.136 -0.484 -0.265 2.206 sum -17.053 7.174 6.209 19.514 Atomic orbital electron populations 1.21704 0.92553 1.02056 1.02523 1.22073 0.97314 0.88372 0.99957 1.62118 1.21848 1.18543 1.23040 1.19404 0.83988 0.94259 0.94452 1.21469 0.93335 1.44370 0.96496 0.91467 1.25931 0.95340 0.95606 1.03069 1.70107 0.99113 1.49794 1.38619 0.85448 0.77664 0.78590 0.79346 1.20329 1.21117 1.18128 1.21116 1.02802 0.88836 0.90809 1.19854 0.91966 0.96715 1.02105 1.21684 0.98914 0.93047 0.86988 1.21749 0.96761 0.95468 1.07667 1.18841 0.91640 0.84666 0.90905 1.86377 1.38278 1.14502 1.82950 1.23697 0.83772 0.99013 1.02185 1.20688 0.82486 0.92833 1.23434 1.43688 1.03056 1.01051 0.97045 1.94555 1.24679 1.69360 1.54939 1.94453 1.92600 0.96361 1.53181 1.20814 1.00155 0.90065 0.93696 0.91208 0.92420 0.91423 0.92479 0.95808 0.97768 1.02579 0.92935 0.95585 0.86085 0.79740 0.78568 0.90440 0.89488 0.85831 0.85654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 9.96 71.98 0.72 -2.33 16 2 C 0.05 1.71 5.51 86.30 0.48 2.19 16 3 N -0.53 -20.46 4.34 -905.37 -3.93 -24.39 16 4 C 0.21 10.69 4.54 85.56 0.39 11.08 16 5 C -0.52 -28.99 8.23 25.60 0.21 -28.78 16 6 H 0.07 3.62 7.31 -2.91 -0.02 3.60 16 7 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 8 N -0.94 -58.29 13.29 21.45 0.28 -58.00 16 9 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 12 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 13 C 0.09 2.79 4.94 85.56 0.42 3.22 16 14 C -0.10 -3.12 5.04 -19.85 -0.10 -3.22 16 15 C 0.01 0.25 9.72 22.25 0.22 0.46 16 16 C -0.20 -3.76 9.04 22.37 0.20 -3.56 16 17 C 0.19 5.26 6.67 22.51 0.15 5.41 16 18 O -0.31 -7.90 8.51 -71.25 -0.61 -8.50 16 19 C 0.01 0.08 9.81 113.37 1.11 1.19 16 20 C -0.11 -3.98 6.87 36.47 0.25 -3.73 16 21 N 0.04 1.74 4.45 -46.24 -0.21 1.54 16 22 O -0.24 -11.09 18.45 18.88 0.35 -10.74 16 23 O -0.14 -5.78 17.24 25.61 0.44 -5.34 16 24 C -0.03 -1.01 7.91 22.25 0.18 -0.83 16 25 H 0.07 1.26 6.89 -2.39 -0.02 1.25 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 2.28 6.58 -2.39 -0.02 2.27 16 29 H 0.02 0.78 8.00 -2.39 -0.02 0.76 16 30 H 0.00 0.24 6.33 -2.39 -0.02 0.23 16 31 H -0.04 -2.51 8.12 -2.39 -0.02 -2.53 16 32 H 0.26 15.53 8.31 -92.71 -0.77 14.75 16 33 H 0.03 0.87 7.90 -2.39 -0.02 0.85 16 34 H 0.12 2.61 6.54 -2.39 -0.02 2.60 16 35 H 0.19 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.20 1.77 6.30 -2.91 -0.02 1.75 16 37 H 0.08 0.71 7.66 -2.39 -0.02 0.70 16 38 H 0.09 0.60 7.66 -2.39 -0.02 0.58 16 39 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.13 5.25 7.54 -2.91 -0.02 5.22 16 Total: -1.00 -77.91 338.45 4.09 -73.82 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: 1.05 Total: 3.26 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: 4.68 Total: -18.52 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -3.85 Total: -80.86 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: 0.18 Total: -24.59 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -77.91 4.09 -73.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454495.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.290 kcal (2) G-P(sol) polarization free energy of solvation -77.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds