Wall clock time and date at job start Tue Mar 31 2020 07:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47251 * 2 1 4 4 N 1.46497 * 109.47081 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00383 * 275.66084 * 4 3 2 6 6 H 1.07999 * 119.99994 * 33.99169 * 5 4 3 7 7 C 1.38810 * 119.99992 * 213.99580 * 5 4 3 8 8 N 1.31620 * 120.00088 * 22.94226 * 7 5 4 9 9 Si 1.86804 * 119.99966 * 202.93660 * 7 5 4 10 10 H 1.48499 * 109.46892 * 59.99835 * 9 7 5 11 11 H 1.48497 * 109.47225 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47055 * 300.00019 * 9 7 5 13 13 C 1.46497 * 120.00003 * 95.65540 * 4 3 2 14 14 C 1.50703 * 109.47456 * 270.00301 * 13 4 3 15 15 C 1.38287 * 119.94228 * 89.99840 * 14 13 4 16 16 C 1.38123 * 120.05292 * 180.02562 * 15 14 13 17 17 C 1.38760 * 119.94475 * 359.97438 * 16 15 14 18 18 O 1.35900 * 120.05229 * 179.97438 * 17 16 15 19 19 C 1.42897 * 117.00244 * 0.02562 * 18 17 16 20 20 C 1.38705 * 119.88650 * 0.24771 * 17 16 15 21 21 N 1.48010 * 120.02648 * 179.74736 * 20 17 16 22 22 O 1.21797 * 119.99771 * 180.02562 * 21 20 17 23 23 O 1.21791 * 119.99592 * 0.02562 * 21 20 17 24 24 C 1.38168 * 119.94783 * 359.51961 * 20 17 16 25 25 H 1.08998 * 109.47295 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47090 * 300.00600 * 1 2 3 27 27 H 1.09005 * 109.46940 * 60.00037 * 1 2 3 28 28 H 1.08995 * 109.47090 * 239.99400 * 2 1 3 29 29 H 1.09000 * 109.46502 * 120.00084 * 2 1 3 30 30 H 1.09001 * 109.46967 * 60.00018 * 3 2 1 31 31 H 1.09000 * 109.47436 * 299.99512 * 3 2 1 32 32 H 0.96996 * 120.00090 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47454 * 150.00002 * 13 4 3 34 34 H 1.09005 * 109.46931 * 30.00128 * 13 4 3 35 35 H 1.08000 * 119.97199 * 0.02562 * 15 14 13 36 36 H 1.07997 * 120.02968 * 179.97438 * 16 15 14 37 37 H 1.09001 * 109.46945 * 299.99674 * 19 18 17 38 38 H 1.08993 * 109.47461 * 59.99844 * 19 18 17 39 39 H 1.09003 * 109.47294 * 179.97438 * 19 18 17 40 40 H 1.07996 * 119.97236 * 180.22624 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1893 1.3256 1.1810 6 1 3.7874 0.7210 1.9806 7 6 5.3994 1.9843 1.3499 8 7 5.6806 3.0420 0.6187 9 14 6.6288 1.3698 2.6150 10 1 7.0218 -0.0242 2.2869 11 1 7.8317 2.2404 2.6000 12 1 6.0098 1.4049 3.9644 13 6 4.2381 1.5672 -1.2616 14 6 4.4894 0.1961 -1.8344 15 6 3.5670 -0.3728 -2.6933 16 6 3.7948 -1.6296 -3.2192 17 6 4.9506 -2.3210 -2.8853 18 8 5.1767 -3.5579 -3.4010 19 6 4.1823 -4.0856 -4.2811 20 6 5.8720 -1.7500 -2.0198 21 7 7.1032 -2.4871 -1.6572 22 8 7.9116 -1.9854 -0.8969 23 8 7.3077 -3.5953 -2.1191 24 6 5.6418 -0.4906 -1.5003 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 6.5264 3.5021 0.7364 33 1 5.1904 2.0657 -1.0810 34 1 3.6493 2.1534 -1.9673 35 1 2.6678 0.1659 -2.9532 36 1 3.0740 -2.0737 -3.8896 37 1 3.2313 -4.1578 -3.7532 38 1 4.0711 -3.4255 -5.1413 39 1 4.4859 -5.0759 -4.6204 40 1 6.3607 -0.0441 -0.8293 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045092475.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:53 Heat of formation + Delta-G solvation = -1.340216 kcal Electronic energy + Delta-G solvation = -24562.371837 eV Core-core repulsion = 20960.587276 eV Total energy + Delta-G solvation = -3601.784561 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.68577 -40.02419 -37.99291 -36.02548 -35.89467 -33.17904 -31.93196 -31.23335 -30.06523 -27.78205 -26.15365 -25.77812 -25.39224 -22.45344 -22.18164 -21.03288 -20.26924 -18.80033 -18.16294 -17.60264 -17.06178 -16.79175 -16.08568 -15.80636 -15.08322 -14.52440 -14.37704 -14.27213 -13.97482 -13.70172 -13.31133 -12.88726 -12.69374 -12.20791 -11.99142 -11.72996 -11.52267 -11.29948 -11.25993 -11.00743 -10.99739 -10.79117 -10.70959 -10.58990 -10.54723 -10.45026 -10.16194 -10.09927 -9.88729 -9.25200 -8.62960 -8.13525 -6.81692 -5.96475 -3.49745 0.37164 1.37085 1.84577 1.94297 3.02814 3.34734 3.42857 3.49783 3.66917 4.40209 4.60472 4.68524 4.97267 4.99537 5.11303 5.25153 5.33021 5.33678 5.34344 5.40701 5.51946 5.63390 5.77582 5.92032 5.99914 6.10408 6.21117 6.29635 6.35077 6.46364 6.47915 6.67923 6.79243 6.80932 6.87239 7.01870 7.18399 7.41381 7.68991 8.21925 8.32127 8.99865 9.62752 10.17036 11.03736 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.011966 B = 0.007167 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.306073 B = 3905.948147 C = 5568.077698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.147 4.147 3 C 0.147 3.853 4 N -0.574 5.574 5 C -0.261 4.261 6 H 0.063 0.937 7 C 0.014 3.986 8 N -0.882 5.882 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.280 1.280 13 C 0.171 3.829 14 C -0.103 4.103 15 C -0.029 4.029 16 C -0.218 4.218 17 C 0.169 3.831 18 O -0.290 6.290 19 C 0.023 3.977 20 C -0.079 4.079 21 N 0.041 4.959 22 O -0.183 6.183 23 O -0.158 6.158 24 C -0.004 4.004 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.036 0.964 32 H 0.259 0.741 33 H 0.114 0.886 34 H 0.043 0.957 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.104 0.896 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.284 -7.611 -9.977 14.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C 0.021 3.979 4 N -0.292 5.292 5 C -0.390 4.390 6 H 0.081 0.919 7 C -0.186 4.186 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.206 1.206 13 C 0.044 3.956 14 C -0.108 4.108 15 C -0.049 4.049 16 C -0.238 4.238 17 C 0.120 3.880 18 O -0.201 6.201 19 C -0.072 4.072 20 C -0.164 4.164 21 N 0.556 4.444 22 O -0.392 6.392 23 O -0.375 6.375 24 C -0.024 4.024 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.131 0.869 34 H 0.061 0.939 35 H 0.153 0.847 36 H 0.158 0.842 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.122 0.878 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.552 -7.201 -10.054 14.491 hybrid contribution 0.664 -0.692 0.643 1.155 sum -6.888 -7.893 -9.412 14.083 Atomic orbital electron populations 1.21725 0.97233 1.00408 1.01124 1.22192 0.93854 1.01020 1.01605 1.20953 0.84815 0.92978 0.99177 1.43784 0.99458 1.83961 1.01952 1.19000 1.03298 1.23771 0.92968 0.91934 1.25072 1.00462 0.94744 0.98363 1.69935 1.23928 1.16340 1.42132 0.86589 0.80946 0.79408 0.81453 1.19913 1.21186 1.20614 1.20167 1.01714 0.87559 0.86129 1.21386 0.91657 1.02304 0.95410 1.21315 0.97974 0.93039 0.92523 1.21155 0.97638 0.97683 1.07288 1.18504 0.92490 0.85315 0.91694 1.86366 1.45884 1.27919 1.59943 1.23164 0.91625 0.99855 0.92522 1.20632 0.89122 0.96881 1.09717 1.43419 1.01780 1.00570 0.98598 1.94550 1.41345 1.71344 1.31997 1.94500 1.82065 1.05556 1.55377 1.20981 0.97883 0.89201 0.94342 0.93857 0.93099 0.93416 0.92946 0.92465 0.93365 0.94541 0.93049 0.86872 0.93904 0.84733 0.84166 0.92394 0.92422 0.87751 0.82644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.56 16 2 C -0.15 -2.42 6.23 -26.73 -0.17 -2.58 16 3 C 0.15 2.76 5.72 -4.05 -0.02 2.73 16 4 N -0.57 -12.75 2.44 -174.61 -0.43 -13.18 16 5 C -0.26 -6.62 9.48 -15.06 -0.14 -6.76 16 6 H 0.06 1.62 7.93 -52.49 -0.42 1.21 16 7 C 0.01 0.37 4.95 -17.43 -0.09 0.29 16 8 N -0.88 -23.55 11.31 55.49 0.63 -22.92 16 9 Si 0.89 21.12 29.61 -169.99 -5.03 16.08 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.17 3.52 5.46 -5.19 -0.03 3.49 16 14 C -0.10 -1.87 5.45 -104.60 -0.57 -2.44 16 15 C -0.03 -0.43 7.86 -39.61 -0.31 -0.74 16 16 C -0.22 -2.93 9.04 -39.43 -0.36 -3.29 16 17 C 0.17 2.73 6.67 -39.22 -0.26 2.47 16 18 O -0.29 -4.33 8.51 -41.55 -0.35 -4.68 16 19 C 0.02 0.21 9.81 101.05 0.99 1.21 16 20 C -0.08 -1.51 6.87 -79.80 -0.55 -2.06 16 21 N 0.04 0.85 4.45 34.03 0.15 1.00 16 22 O -0.18 -4.05 18.45 -29.46 -0.54 -4.59 16 23 O -0.16 -3.22 17.24 -36.49 -0.63 -3.85 16 24 C 0.00 -0.08 9.20 -39.60 -0.36 -0.44 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.85 6.13 -51.93 -0.32 0.53 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 31 H 0.04 0.62 7.83 -51.93 -0.41 0.22 16 32 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.11 2.70 5.26 -51.93 -0.27 2.42 16 34 H 0.04 0.80 7.80 -51.93 -0.40 0.40 16 35 H 0.13 1.65 8.02 -52.49 -0.42 1.23 16 36 H 0.14 1.37 6.30 -52.49 -0.33 1.04 16 37 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 38 H 0.06 0.43 7.66 -51.93 -0.40 0.04 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.16 3.41 7.61 -52.49 -0.40 3.01 16 LS Contribution 339.29 15.07 5.11 5.11 Total: -1.00 -29.08 339.29 -8.03 -37.11 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -5.43 Total: -0.40 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -1.50 Total: -9.69 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.35 Total: -35.10 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -1.53 Total: -13.12 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.08 -8.03 -37.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092475.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.770 kcal (2) G-P(sol) polarization free energy of solvation -29.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds