Wall clock time and date at job start Tue Mar 31 2020 07:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47251 * 2 1 4 4 N 1.46497 * 109.47081 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00383 * 275.66084 * 4 3 2 6 6 H 1.07999 * 119.99994 * 33.99169 * 5 4 3 7 7 C 1.38810 * 119.99992 * 213.99580 * 5 4 3 8 8 N 1.31620 * 120.00088 * 22.94226 * 7 5 4 9 9 Si 1.86804 * 119.99966 * 202.93660 * 7 5 4 10 10 H 1.48499 * 109.46892 * 59.99835 * 9 7 5 11 11 H 1.48497 * 109.47225 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47055 * 300.00019 * 9 7 5 13 13 C 1.46497 * 120.00003 * 95.65540 * 4 3 2 14 14 C 1.50703 * 109.47456 * 270.00301 * 13 4 3 15 15 C 1.38287 * 119.94228 * 89.99840 * 14 13 4 16 16 C 1.38123 * 120.05292 * 180.02562 * 15 14 13 17 17 C 1.38760 * 119.94475 * 359.97438 * 16 15 14 18 18 O 1.35900 * 120.05229 * 179.97438 * 17 16 15 19 19 C 1.42897 * 117.00244 * 0.02562 * 18 17 16 20 20 C 1.38705 * 119.88650 * 0.24771 * 17 16 15 21 21 N 1.48010 * 120.02648 * 179.74736 * 20 17 16 22 22 O 1.21797 * 119.99771 * 180.02562 * 21 20 17 23 23 O 1.21791 * 119.99592 * 0.02562 * 21 20 17 24 24 C 1.38168 * 119.94783 * 359.51961 * 20 17 16 25 25 H 1.08998 * 109.47295 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47090 * 300.00600 * 1 2 3 27 27 H 1.09005 * 109.46940 * 60.00037 * 1 2 3 28 28 H 1.08995 * 109.47090 * 239.99400 * 2 1 3 29 29 H 1.09000 * 109.46502 * 120.00084 * 2 1 3 30 30 H 1.09001 * 109.46967 * 60.00018 * 3 2 1 31 31 H 1.09000 * 109.47436 * 299.99512 * 3 2 1 32 32 H 0.96996 * 120.00090 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47454 * 150.00002 * 13 4 3 34 34 H 1.09005 * 109.46931 * 30.00128 * 13 4 3 35 35 H 1.08000 * 119.97199 * 0.02562 * 15 14 13 36 36 H 1.07997 * 120.02968 * 179.97438 * 16 15 14 37 37 H 1.09001 * 109.46945 * 299.99674 * 19 18 17 38 38 H 1.08993 * 109.47461 * 59.99844 * 19 18 17 39 39 H 1.09003 * 109.47294 * 179.97438 * 19 18 17 40 40 H 1.07996 * 119.97236 * 180.22624 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1893 1.3256 1.1810 6 1 3.7874 0.7210 1.9806 7 6 5.3994 1.9843 1.3499 8 7 5.6806 3.0420 0.6187 9 14 6.6288 1.3698 2.6150 10 1 7.0218 -0.0242 2.2869 11 1 7.8317 2.2404 2.6000 12 1 6.0098 1.4049 3.9644 13 6 4.2381 1.5672 -1.2616 14 6 4.4894 0.1961 -1.8344 15 6 3.5670 -0.3728 -2.6933 16 6 3.7948 -1.6296 -3.2192 17 6 4.9506 -2.3210 -2.8853 18 8 5.1767 -3.5579 -3.4010 19 6 4.1823 -4.0856 -4.2811 20 6 5.8720 -1.7500 -2.0198 21 7 7.1032 -2.4871 -1.6572 22 8 7.9116 -1.9854 -0.8969 23 8 7.3077 -3.5953 -2.1191 24 6 5.6418 -0.4906 -1.5003 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 6.5264 3.5021 0.7364 33 1 5.1904 2.0657 -1.0810 34 1 3.6493 2.1534 -1.9673 35 1 2.6678 0.1659 -2.9532 36 1 3.0740 -2.0737 -3.8896 37 1 3.2313 -4.1578 -3.7532 38 1 4.0711 -3.4255 -5.1413 39 1 4.4859 -5.0759 -4.6204 40 1 6.3607 -0.0441 -0.8293 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045092475.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:53 Heat of formation + Delta-G solvation = -16.060791 kcal Electronic energy + Delta-G solvation = -24563.010169 eV Core-core repulsion = 20960.587276 eV Total energy + Delta-G solvation = -3602.422893 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.23378 -41.28817 -39.30046 -37.62101 -37.43810 -34.69957 -33.38375 -32.75016 -31.50334 -28.70113 -27.75994 -27.27904 -26.83998 -23.92015 -23.54040 -22.42725 -21.78339 -20.18805 -19.73616 -18.92863 -18.63838 -18.49913 -17.37824 -16.85266 -16.79881 -15.96081 -15.72835 -15.63113 -15.50184 -14.94797 -14.81188 -14.16068 -13.87853 -13.44677 -13.29300 -13.21558 -12.99265 -12.71513 -12.66877 -12.63703 -12.50805 -12.34824 -12.27098 -12.08779 -12.04695 -11.99931 -11.83984 -11.77430 -11.31255 -10.56330 -10.53093 -9.44517 -8.65559 -7.90901 -5.46134 -1.11879 0.09335 0.37408 0.47429 1.36790 1.44766 1.50534 1.97529 2.32288 2.46602 3.17306 3.40481 3.58948 3.77915 3.86823 4.05758 4.08898 4.29012 4.33190 4.40554 4.44535 4.46804 4.66171 4.72184 4.76466 4.82089 4.86276 5.00246 5.01618 5.18870 5.23998 5.29798 5.40818 5.43195 5.47096 5.64623 5.67113 5.75126 6.06862 6.40809 6.58599 7.11409 7.82430 8.28703 9.03901 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.011966 B = 0.007167 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.306073 B = 3905.948147 C = 5568.077698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C 0.144 3.856 4 N -0.589 5.589 5 C -0.257 4.257 6 H 0.049 0.951 7 C -0.021 4.021 8 N -0.904 5.904 9 Si 0.924 3.076 10 H -0.292 1.292 11 H -0.289 1.289 12 H -0.274 1.274 13 C 0.174 3.826 14 C -0.113 4.113 15 C -0.007 4.007 16 C -0.194 4.194 17 C 0.183 3.817 18 O -0.310 6.310 19 C 0.007 3.993 20 C -0.106 4.106 21 N 0.042 4.958 22 O -0.250 6.250 23 O -0.134 6.134 24 C -0.026 4.026 25 H 0.058 0.942 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.026 0.974 30 H 0.030 0.970 31 H 0.062 0.938 32 H 0.254 0.746 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.174 0.826 36 H 0.195 0.805 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.124 0.876 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.005 -9.311 -13.036 19.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.019 3.981 4 N -0.308 5.308 5 C -0.387 4.387 6 H 0.067 0.933 7 C -0.219 4.219 8 N -0.547 5.547 9 Si 0.754 3.246 10 H -0.219 1.219 11 H -0.214 1.214 12 H -0.199 1.199 13 C 0.048 3.952 14 C -0.117 4.117 15 C -0.026 4.026 16 C -0.213 4.213 17 C 0.133 3.867 18 O -0.221 6.221 19 C -0.086 4.086 20 C -0.191 4.191 21 N 0.552 4.448 22 O -0.444 6.444 23 O -0.361 6.361 24 C -0.046 4.046 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.192 0.808 36 H 0.212 0.788 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.142 0.858 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.236 -8.844 -13.047 19.357 hybrid contribution 1.660 -0.370 1.360 2.178 sum -9.575 -9.215 -11.688 17.697 Atomic orbital electron populations 1.21663 0.94248 1.01737 1.02090 1.22027 0.96299 0.98674 1.00542 1.21094 0.82703 0.94766 0.99528 1.43948 1.00981 1.84368 1.01482 1.19029 1.03382 1.22352 0.93957 0.93337 1.25389 1.01553 0.95297 0.99666 1.70005 1.23871 1.17379 1.43475 0.86008 0.79990 0.77845 0.80797 1.21868 1.21446 1.19908 1.19972 1.00149 0.89057 0.86061 1.21091 0.92263 1.01046 0.97289 1.21677 0.97625 0.93357 0.89906 1.21678 0.96849 0.96463 1.06307 1.18712 0.91997 0.85999 0.89980 1.86362 1.48345 1.26913 1.60525 1.23666 0.91259 1.01148 0.92508 1.20762 0.89203 0.97134 1.12031 1.43721 1.02328 1.00559 0.98175 1.94557 1.43133 1.72113 1.34579 1.94430 1.81964 1.05603 1.54118 1.20680 0.98435 0.90252 0.95264 0.92335 0.93408 0.91253 0.92021 0.95523 0.95199 0.91947 0.93681 0.90659 0.91644 0.80821 0.78762 0.90333 0.89945 0.85799 0.86725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.91 71.98 0.71 -2.40 16 2 C -0.14 -4.10 6.23 30.59 0.19 -3.91 16 3 C 0.14 5.16 5.72 86.38 0.49 5.65 16 4 N -0.59 -26.22 2.44 -706.35 -1.73 -27.94 16 5 C -0.26 -13.47 9.48 84.03 0.80 -12.67 16 6 H 0.05 2.63 7.93 -2.91 -0.02 2.61 16 7 C -0.02 -1.12 4.95 84.86 0.42 -0.70 16 8 N -0.90 -50.54 11.31 21.65 0.24 -50.30 16 9 Si 0.92 45.90 29.61 68.60 2.03 47.93 16 10 H -0.29 -15.18 7.11 99.48 0.71 -14.48 16 11 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 12 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 13 C 0.17 7.14 5.46 85.63 0.47 7.60 16 14 C -0.11 -3.99 5.45 -19.85 -0.11 -4.10 16 15 C -0.01 -0.17 7.86 22.25 0.17 0.00 16 16 C -0.19 -4.08 9.04 22.37 0.20 -3.88 16 17 C 0.18 5.33 6.67 22.51 0.15 5.48 16 18 O -0.31 -8.06 8.51 -71.27 -0.61 -8.67 16 19 C 0.01 0.09 9.81 113.37 1.11 1.21 16 20 C -0.11 -4.08 6.87 36.47 0.25 -3.83 16 21 N 0.04 1.83 4.45 -46.24 -0.21 1.62 16 22 O -0.25 -12.03 18.45 18.89 0.35 -11.68 16 23 O -0.13 -5.51 17.24 25.62 0.44 -5.07 16 24 C -0.03 -1.07 9.20 22.26 0.20 -0.86 16 25 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.06 1.73 6.13 -2.39 -0.01 1.71 16 29 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.03 1.16 8.08 -2.39 -0.02 1.14 16 31 H 0.06 1.91 7.83 -2.39 -0.02 1.89 16 32 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 33 H 0.08 3.75 5.26 -2.39 -0.01 3.74 16 34 H 0.07 2.33 7.80 -2.38 -0.02 2.31 16 35 H 0.17 3.00 8.02 -2.91 -0.02 2.98 16 36 H 0.20 2.07 6.30 -2.91 -0.02 2.05 16 37 H 0.08 0.71 7.66 -2.39 -0.02 0.69 16 38 H 0.08 0.67 7.66 -2.39 -0.02 0.65 16 39 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.11 5.60 7.61 -2.91 -0.02 5.58 16 Total: -1.00 -69.59 339.29 6.64 -62.95 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 1.05 Total: 3.56 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 5.07 Total: -12.41 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -1.69 Total: -76.62 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: 0.18 Total: -25.41 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -69.59 6.64 -62.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092475.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.891 kcal (2) G-P(sol) polarization free energy of solvation -69.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds