Wall clock time and date at job start Tue Mar 31 2020 07:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46814 * 2 1 4 4 N 1.46508 * 109.47074 * 184.52383 * 3 2 1 5 5 C 1.36933 * 119.99857 * 96.11104 * 4 3 2 6 6 H 1.08001 * 119.99689 * 177.42685 * 5 4 3 7 7 C 1.38813 * 120.00166 * 357.41986 * 5 4 3 8 8 N 1.31618 * 120.00280 * 325.43864 * 7 5 4 9 9 Si 1.86804 * 120.00027 * 145.43769 * 7 5 4 10 10 H 1.48498 * 109.47124 * 94.98864 * 9 7 5 11 11 H 1.48500 * 109.47118 * 214.99129 * 9 7 5 12 12 H 1.48501 * 109.47049 * 334.99099 * 9 7 5 13 13 C 1.46494 * 119.99788 * 276.11359 * 4 3 2 14 14 C 1.50703 * 109.46994 * 265.60155 * 13 4 3 15 15 C 1.38171 * 120.02652 * 258.88696 * 14 13 4 16 16 C 1.38247 * 120.05468 * 179.78842 * 15 14 13 17 17 N 1.48000 * 119.94421 * 180.21210 * 16 15 14 18 18 O 1.21798 * 119.99754 * 180.25674 * 17 16 15 19 19 O 1.21803 * 119.99790 * 0.25521 * 17 16 15 20 20 C 1.38285 * 120.10879 * 0.47213 * 16 15 14 21 21 C 1.38124 * 120.05846 * 359.78039 * 20 16 15 22 22 C 1.38708 * 120.03051 * 79.16543 * 14 13 4 23 23 O 1.35899 * 120.05497 * 359.97438 * 22 14 13 24 24 C 1.42893 * 117.00239 * 179.97438 * 23 22 14 25 25 H 1.09001 * 109.47129 * 60.00060 * 1 2 3 26 26 H 1.09001 * 109.46941 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47141 * 299.99921 * 1 2 3 28 28 H 1.08995 * 109.47412 * 240.00193 * 2 1 3 29 29 H 1.09001 * 109.47129 * 119.99940 * 2 1 3 30 30 H 1.08997 * 109.47574 * 64.52722 * 3 2 1 31 31 H 1.09003 * 109.47305 * 304.52345 * 3 2 1 32 32 H 0.96993 * 120.00264 * 179.97438 * 8 7 5 33 33 H 1.08995 * 109.47503 * 25.60127 * 13 4 3 34 34 H 1.08997 * 109.47111 * 145.60016 * 13 4 3 35 35 H 1.07998 * 119.96888 * 0.02898 * 15 14 13 36 36 H 1.08000 * 119.97010 * 179.77260 * 20 16 15 37 37 H 1.08000 * 120.02981 * 179.97438 * 21 20 16 38 38 H 1.08995 * 109.47391 * 300.00280 * 24 23 22 39 39 H 1.08997 * 109.46947 * 60.00415 * 24 23 22 40 40 H 1.09002 * 109.47286 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5010 1.4441 -0.1089 5 6 4.0962 1.6020 -1.3320 6 1 5.1727 1.6447 -1.4072 7 6 3.3159 1.7069 -2.4753 8 7 2.1907 1.0305 -2.5685 9 14 3.8628 2.8082 -3.8816 10 1 4.5984 1.9993 -4.8864 11 1 2.6719 3.4256 -4.5187 12 1 4.7528 3.8752 -3.3574 13 6 4.3251 1.2766 1.0906 14 6 4.7103 2.6306 1.6285 15 6 5.9705 3.1401 1.3807 16 6 6.3230 4.3840 1.8702 17 7 7.6719 4.9293 1.5994 18 8 7.9851 6.0232 2.0341 19 8 8.4689 4.2842 0.9419 20 6 5.4191 5.1173 2.6169 21 6 4.1598 4.6102 2.8717 22 6 3.8020 3.3641 2.3775 23 8 2.5636 2.8630 2.6269 24 6 1.6807 3.6729 3.4056 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.7444 1.9325 0.9277 31 1 1.6119 1.9793 -0.8467 32 1 1.6453 1.1041 -3.3672 33 1 3.7594 0.7327 1.8470 34 1 5.2253 0.7166 0.8376 35 1 6.6794 2.5676 0.8010 36 1 5.6981 6.0872 3.0012 37 1 3.4544 5.1831 3.4553 38 1 2.1245 3.8572 4.3839 39 1 1.5153 4.6226 2.8969 40 1 0.7289 3.1566 3.5302 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045092607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:56 Heat of formation + Delta-G solvation = 8.973428 kcal Electronic energy + Delta-G solvation = -24468.101911 eV Core-core repulsion = 20866.764583 eV Total energy + Delta-G solvation = -3601.337328 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.87094 -40.31966 -37.57489 -36.31683 -36.19947 -32.85161 -31.94253 -30.97281 -30.26448 -27.79466 -26.08694 -25.62383 -25.52741 -22.56830 -22.05431 -21.20735 -19.90165 -18.55084 -18.36687 -18.13882 -17.22947 -16.75135 -16.17995 -15.95754 -15.01135 -14.71470 -14.11562 -13.83446 -13.64987 -13.46746 -13.37191 -13.13168 -12.67416 -12.31696 -12.11614 -11.61836 -11.40718 -11.36970 -11.26702 -11.05887 -10.87668 -10.87551 -10.84913 -10.75161 -10.45133 -10.15095 -10.07588 -9.83290 -9.26828 -9.10746 -8.44783 -8.29453 -7.04406 -5.94232 -3.08402 0.18937 1.14983 1.67576 1.75037 3.13072 3.35403 3.46214 3.49886 3.53418 4.47806 4.49961 4.58710 4.83660 4.96868 5.03600 5.08084 5.21813 5.37225 5.43538 5.52181 5.66812 5.77276 5.88850 6.02853 6.13553 6.14675 6.27385 6.43397 6.47725 6.61213 6.70157 6.73093 6.87921 7.11088 7.17186 7.23224 7.61365 7.71563 7.95795 7.97080 8.22363 9.12570 9.77941 10.22800 11.12066 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.012653 B = 0.006465 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.329254 B = 4330.207520 C = 5871.981494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.124 4.124 3 C 0.162 3.838 4 N -0.583 5.583 5 C -0.268 4.268 6 H 0.076 0.924 7 C 0.015 3.985 8 N -0.872 5.872 9 Si 0.870 3.130 10 H -0.288 1.288 11 H -0.290 1.290 12 H -0.281 1.281 13 C 0.192 3.808 14 C -0.108 4.108 15 C -0.010 4.010 16 C -0.086 4.086 17 N 0.041 4.959 18 O -0.185 6.185 19 O -0.170 6.170 20 C -0.029 4.029 21 C -0.217 4.217 22 C 0.191 3.809 23 O -0.286 6.286 24 C 0.020 3.980 25 H 0.052 0.948 26 H 0.033 0.967 27 H 0.031 0.969 28 H 0.088 0.912 29 H 0.019 0.981 30 H 0.025 0.975 31 H 0.081 0.919 32 H 0.253 0.747 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.154 0.846 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.737 4.148 13.111 13.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.164 4.164 3 C 0.038 3.962 4 N -0.301 5.301 5 C -0.395 4.395 6 H 0.094 0.906 7 C -0.184 4.184 8 N -0.515 5.515 9 Si 0.699 3.301 10 H -0.216 1.216 11 H -0.216 1.216 12 H -0.207 1.207 13 C 0.063 3.937 14 C -0.113 4.113 15 C -0.031 4.031 16 C -0.170 4.170 17 N 0.556 4.444 18 O -0.396 6.396 19 O -0.385 6.385 20 C -0.048 4.048 21 C -0.237 4.237 22 C 0.143 3.857 23 O -0.197 6.197 24 C -0.075 4.075 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.107 0.893 29 H 0.038 0.962 30 H 0.043 0.957 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.172 0.828 36 H 0.164 0.836 37 H 0.161 0.839 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.634 3.668 13.013 13.774 hybrid contribution 0.489 1.173 -0.852 1.530 sum -2.145 4.841 12.161 13.264 Atomic orbital electron populations 1.21600 0.98315 0.99311 1.00107 1.21953 0.93123 1.00615 1.00701 1.21051 0.81955 0.94527 0.98698 1.44161 1.01471 1.83172 1.01339 1.19136 0.91789 1.44933 0.83667 0.90643 1.24577 0.97038 0.99921 0.96911 1.70305 1.16131 1.37195 1.27855 0.86770 0.77838 0.82727 0.82816 1.21553 1.21566 1.20680 1.19612 0.95940 0.88272 0.89871 1.20733 0.90433 1.02872 0.97249 1.20761 0.96313 0.91779 0.94235 1.20981 0.84444 0.98921 1.12646 1.43583 1.02901 0.99978 0.97933 1.94470 1.83092 1.07798 1.54260 1.94529 1.47082 1.59568 1.37295 1.20585 0.91446 0.99267 0.93528 1.21127 0.97704 0.96922 1.07916 1.19236 0.84913 0.90831 0.90732 1.86310 1.21114 1.44783 1.67524 1.23167 0.93621 0.96326 0.94337 0.92893 0.94816 0.95032 0.89302 0.96199 0.95652 0.90042 0.93682 0.92075 0.92289 0.82800 0.83554 0.83865 0.92577 0.92333 0.87798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.91 37.16 0.37 -2.08 16 2 C -0.12 -2.62 5.77 -26.73 -0.15 -2.77 16 3 C 0.16 3.59 4.87 -4.04 -0.02 3.57 16 4 N -0.58 -13.26 2.52 -174.61 -0.44 -13.71 16 5 C -0.27 -6.87 9.63 -15.06 -0.15 -7.02 16 6 H 0.08 1.94 8.02 -52.49 -0.42 1.52 16 7 C 0.01 0.39 4.72 -17.43 -0.08 0.30 16 8 N -0.87 -23.23 9.31 55.49 0.52 -22.72 16 9 Si 0.87 21.13 29.67 -169.99 -5.04 16.09 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 C 0.19 3.60 5.49 -5.20 -0.03 3.57 16 14 C -0.11 -1.83 5.45 -104.47 -0.57 -2.40 16 15 C -0.01 -0.18 9.17 -39.60 -0.36 -0.54 16 16 C -0.09 -1.40 6.85 -79.94 -0.55 -1.94 16 17 N 0.04 0.72 4.45 33.97 0.15 0.88 16 18 O -0.18 -3.22 18.44 -29.46 -0.54 -3.76 16 19 O -0.17 -3.16 18.44 -29.46 -0.54 -3.70 16 20 C -0.03 -0.39 9.55 -39.61 -0.38 -0.77 16 21 C -0.22 -2.72 9.04 -39.43 -0.36 -3.08 16 22 C 0.19 2.86 6.66 -39.22 -0.26 2.60 16 23 O -0.29 -4.05 7.26 -19.42 -0.14 -4.19 16 24 C 0.02 0.19 9.81 101.05 0.99 1.18 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 2.19 6.78 -51.93 -0.35 1.84 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.03 0.51 5.44 -51.93 -0.28 0.23 16 31 H 0.08 2.06 5.76 -51.93 -0.30 1.76 16 32 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 33 H 0.06 1.08 7.78 -51.93 -0.40 0.68 16 34 H 0.06 1.08 7.92 -51.93 -0.41 0.67 16 35 H 0.15 2.55 7.58 -52.49 -0.40 2.15 16 36 H 0.15 1.68 7.61 -52.49 -0.40 1.28 16 37 H 0.14 1.31 6.30 -52.49 -0.33 0.98 16 38 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 39 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 335.87 15.07 5.06 5.06 Total: -1.00 -28.85 335.87 -7.87 -36.72 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -5.34 Total: -1.30 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -1.55 Total: -9.37 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.23 Total: -35.55 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -1.23 Total: -11.65 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.04 Total: 16.09 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.85 -7.87 -36.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.695 kcal (2) G-P(sol) polarization free energy of solvation -28.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds