Wall clock time and date at job start Tue Mar 31 2020 07:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46814 * 2 1 4 4 N 1.46508 * 109.47074 * 184.52383 * 3 2 1 5 5 C 1.36933 * 119.99857 * 96.11104 * 4 3 2 6 6 H 1.08001 * 119.99689 * 177.42685 * 5 4 3 7 7 C 1.38813 * 120.00166 * 357.41986 * 5 4 3 8 8 N 1.31618 * 120.00280 * 325.43864 * 7 5 4 9 9 Si 1.86804 * 120.00027 * 145.43769 * 7 5 4 10 10 H 1.48498 * 109.47124 * 94.98864 * 9 7 5 11 11 H 1.48500 * 109.47118 * 214.99129 * 9 7 5 12 12 H 1.48501 * 109.47049 * 334.99099 * 9 7 5 13 13 C 1.46494 * 119.99788 * 276.11359 * 4 3 2 14 14 C 1.50703 * 109.46994 * 265.60155 * 13 4 3 15 15 C 1.38171 * 120.02652 * 258.88696 * 14 13 4 16 16 C 1.38247 * 120.05468 * 179.78842 * 15 14 13 17 17 N 1.48000 * 119.94421 * 180.21210 * 16 15 14 18 18 O 1.21798 * 119.99754 * 180.25674 * 17 16 15 19 19 O 1.21803 * 119.99790 * 0.25521 * 17 16 15 20 20 C 1.38285 * 120.10879 * 0.47213 * 16 15 14 21 21 C 1.38124 * 120.05846 * 359.78039 * 20 16 15 22 22 C 1.38708 * 120.03051 * 79.16543 * 14 13 4 23 23 O 1.35899 * 120.05497 * 359.97438 * 22 14 13 24 24 C 1.42893 * 117.00239 * 179.97438 * 23 22 14 25 25 H 1.09001 * 109.47129 * 60.00060 * 1 2 3 26 26 H 1.09001 * 109.46941 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47141 * 299.99921 * 1 2 3 28 28 H 1.08995 * 109.47412 * 240.00193 * 2 1 3 29 29 H 1.09001 * 109.47129 * 119.99940 * 2 1 3 30 30 H 1.08997 * 109.47574 * 64.52722 * 3 2 1 31 31 H 1.09003 * 109.47305 * 304.52345 * 3 2 1 32 32 H 0.96993 * 120.00264 * 179.97438 * 8 7 5 33 33 H 1.08995 * 109.47503 * 25.60127 * 13 4 3 34 34 H 1.08997 * 109.47111 * 145.60016 * 13 4 3 35 35 H 1.07998 * 119.96888 * 0.02898 * 15 14 13 36 36 H 1.08000 * 119.97010 * 179.77260 * 20 16 15 37 37 H 1.08000 * 120.02981 * 179.97438 * 21 20 16 38 38 H 1.08995 * 109.47391 * 300.00280 * 24 23 22 39 39 H 1.08997 * 109.46947 * 60.00415 * 24 23 22 40 40 H 1.09002 * 109.47286 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5010 1.4441 -0.1089 5 6 4.0962 1.6020 -1.3320 6 1 5.1727 1.6447 -1.4072 7 6 3.3159 1.7069 -2.4753 8 7 2.1907 1.0305 -2.5685 9 14 3.8628 2.8082 -3.8816 10 1 4.5984 1.9993 -4.8864 11 1 2.6719 3.4256 -4.5187 12 1 4.7528 3.8752 -3.3574 13 6 4.3251 1.2766 1.0906 14 6 4.7103 2.6306 1.6285 15 6 5.9705 3.1401 1.3807 16 6 6.3230 4.3840 1.8702 17 7 7.6719 4.9293 1.5994 18 8 7.9851 6.0232 2.0341 19 8 8.4689 4.2842 0.9419 20 6 5.4191 5.1173 2.6169 21 6 4.1598 4.6102 2.8717 22 6 3.8020 3.3641 2.3775 23 8 2.5636 2.8630 2.6269 24 6 1.6807 3.6729 3.4056 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.7444 1.9325 0.9277 31 1 1.6119 1.9793 -0.8467 32 1 1.6453 1.1041 -3.3672 33 1 3.7594 0.7327 1.8470 34 1 5.2253 0.7166 0.8376 35 1 6.6794 2.5676 0.8010 36 1 5.6981 6.0872 3.0012 37 1 3.4544 5.1831 3.4553 38 1 2.1245 3.8572 4.3839 39 1 1.5153 4.6226 2.8969 40 1 0.7289 3.1566 3.5302 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045092607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:56 Heat of formation + Delta-G solvation = -5.209962 kcal Electronic energy + Delta-G solvation = -24468.716949 eV Core-core repulsion = 20866.764583 eV Total energy + Delta-G solvation = -3601.952366 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.20084 -41.45678 -38.70257 -37.93308 -37.62047 -34.29973 -33.74342 -32.13317 -31.82948 -28.67099 -27.63885 -27.28071 -26.80271 -24.07919 -23.28311 -22.64909 -21.56260 -19.88897 -19.72609 -19.18436 -18.57585 -18.51269 -17.42019 -17.10740 -16.58981 -15.89129 -15.62386 -15.46217 -15.08063 -14.84011 -14.74369 -14.38798 -13.86212 -13.79161 -13.52410 -13.04836 -12.97649 -12.70665 -12.64495 -12.57716 -12.33031 -12.27673 -12.23719 -12.18642 -12.10437 -11.90372 -11.72192 -11.65494 -11.00158 -10.30442 -10.22127 -9.62821 -8.87197 -7.91468 -5.05010 -1.10603 0.00212 0.40308 0.47922 1.38970 1.46643 1.53961 2.14881 2.31062 2.54837 3.16873 3.41820 3.51869 3.70117 3.81722 3.93950 4.23532 4.30176 4.40560 4.43859 4.55924 4.63116 4.68153 4.70594 4.81969 4.82262 4.92809 4.95801 5.00855 5.10244 5.26430 5.29592 5.43664 5.50245 5.54589 5.66964 5.88353 6.17132 6.21803 6.31680 6.57814 7.19929 7.93202 8.33139 9.12651 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.012653 B = 0.006465 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.329254 B = 4330.207520 C = 5871.981494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.117 4.117 3 C 0.170 3.830 4 N -0.598 5.598 5 C -0.265 4.265 6 H 0.065 0.935 7 C -0.027 4.027 8 N -0.888 5.888 9 Si 0.916 3.084 10 H -0.293 1.293 11 H -0.291 1.291 12 H -0.290 1.290 13 C 0.194 3.806 14 C -0.129 4.129 15 C -0.018 4.018 16 C -0.105 4.105 17 N 0.042 4.958 18 O -0.165 6.165 19 O -0.219 6.219 20 C -0.015 4.015 21 C -0.200 4.200 22 C 0.196 3.804 23 O -0.306 6.306 24 C 0.007 3.993 25 H 0.035 0.965 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.029 0.971 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.247 0.753 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.141 0.859 36 H 0.176 0.824 37 H 0.189 0.811 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.214 5.823 15.793 17.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.157 4.157 3 C 0.046 3.954 4 N -0.317 5.317 5 C -0.395 4.395 6 H 0.083 0.917 7 C -0.224 4.224 8 N -0.532 5.532 9 Si 0.746 3.254 10 H -0.220 1.220 11 H -0.218 1.218 12 H -0.216 1.216 13 C 0.067 3.933 14 C -0.134 4.134 15 C -0.039 4.039 16 C -0.189 4.189 17 N 0.553 4.447 18 O -0.383 6.383 19 O -0.422 6.422 20 C -0.034 4.034 21 C -0.219 4.219 22 C 0.147 3.853 23 O -0.217 6.217 24 C -0.086 4.086 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.159 0.841 36 H 0.193 0.807 37 H 0.206 0.794 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.059 5.280 15.677 17.032 hybrid contribution 0.896 0.717 -1.471 1.866 sum -3.163 5.997 14.206 15.741 Atomic orbital electron populations 1.21496 0.95953 1.00457 1.00500 1.21799 0.95221 0.99600 0.99064 1.20928 0.81542 0.94803 0.98167 1.44286 1.02128 1.83766 1.01562 1.19254 0.91480 1.43603 0.85120 0.91662 1.24974 0.97772 1.01259 0.98379 1.70405 1.16769 1.38150 1.27908 0.86054 0.76935 0.81279 0.81166 1.22002 1.21759 1.21601 1.19606 0.95246 0.89652 0.88770 1.20378 0.91373 1.02071 0.99549 1.20676 0.96408 0.92365 0.94405 1.21113 0.84152 0.99311 1.14370 1.43794 1.03389 0.99864 0.97605 1.94425 1.83198 1.07599 1.53125 1.94541 1.48096 1.60193 1.39371 1.21016 0.90977 0.99799 0.91638 1.21538 0.97725 0.95873 1.06754 1.19318 0.84967 0.91269 0.89735 1.86258 1.20951 1.46381 1.68159 1.23578 0.93483 0.96485 0.95099 0.94558 0.93330 0.92470 0.93377 0.95228 0.93377 0.93424 0.94290 0.90957 0.92994 0.84144 0.80688 0.79395 0.89792 0.91258 0.86271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.37 9.91 71.98 0.71 -3.66 16 2 C -0.12 -4.89 5.77 30.60 0.18 -4.71 16 3 C 0.17 7.46 4.87 86.38 0.42 7.88 16 4 N -0.60 -27.42 2.52 -706.34 -1.78 -29.20 16 5 C -0.27 -13.98 9.63 84.03 0.81 -13.17 16 6 H 0.07 3.48 8.02 -2.91 -0.02 3.46 16 7 C -0.03 -1.44 4.72 84.86 0.40 -1.04 16 8 N -0.89 -48.58 9.31 21.65 0.20 -48.38 16 9 Si 0.92 44.64 29.67 68.60 2.04 46.68 16 10 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 11 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 12 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 13 C 0.19 7.29 5.49 85.64 0.47 7.76 16 14 C -0.13 -4.27 5.45 -19.77 -0.11 -4.38 16 15 C -0.02 -0.61 9.17 22.26 0.20 -0.41 16 16 C -0.11 -3.28 6.85 36.39 0.25 -3.03 16 17 N 0.04 1.47 4.45 -46.44 -0.21 1.26 16 18 O -0.16 -5.44 18.44 18.89 0.35 -5.09 16 19 O -0.22 -8.39 18.44 18.88 0.35 -8.04 16 20 C -0.01 -0.35 9.55 22.25 0.21 -0.14 16 21 C -0.20 -4.08 9.04 22.37 0.20 -3.88 16 22 C 0.20 5.28 6.66 22.50 0.15 5.43 16 23 O -0.31 -7.58 7.26 -92.41 -0.67 -8.25 16 24 C 0.01 0.10 9.81 113.37 1.11 1.21 16 25 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 2.41 6.78 -2.39 -0.02 2.39 16 29 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.86 5.44 -2.39 -0.01 1.85 16 31 H 0.05 2.43 5.76 -2.39 -0.01 2.41 16 32 H 0.25 13.35 8.31 -92.71 -0.77 12.57 16 33 H 0.07 2.50 7.78 -2.39 -0.02 2.48 16 34 H 0.05 1.97 7.92 -2.39 -0.02 1.95 16 35 H 0.14 4.96 7.58 -2.91 -0.02 4.94 16 36 H 0.18 3.12 7.61 -2.91 -0.02 3.10 16 37 H 0.19 2.15 6.30 -2.91 -0.02 2.13 16 38 H 0.08 0.70 7.66 -2.39 -0.02 0.68 16 39 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 40 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -64.54 335.87 6.34 -58.20 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: 1.05 Total: 4.94 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 5.01 Total: -12.12 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -1.79 Total: -76.32 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: 0.03 Total: -21.38 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.04 Total: 46.68 kcal Total: -64.54 6.34 -58.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.991 kcal (2) G-P(sol) polarization free energy of solvation -64.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds