Wall clock time and date at job start Tue Mar 31 2020 07:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47404 * 2 1 4 4 N 1.46491 * 109.47295 * 182.32817 * 3 2 1 5 5 C 1.37101 * 119.99995 * 97.34013 * 4 3 2 6 6 H 1.08000 * 120.00331 * 161.70889 * 5 4 3 7 7 C 1.38949 * 119.99831 * 341.97874 * 5 4 3 8 8 N 1.31413 * 120.00293 * 354.60956 * 7 5 4 9 9 Si 1.86807 * 119.99873 * 174.60305 * 7 5 4 10 10 H 1.48500 * 109.47089 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46953 * 120.00365 * 9 7 5 12 12 H 1.48502 * 109.47131 * 240.00168 * 9 7 5 13 13 C 1.34773 * 120.00307 * 277.33808 * 4 3 2 14 14 O 1.21292 * 119.99815 * 353.99511 * 13 4 3 15 15 C 1.50703 * 120.00442 * 174.00215 * 13 4 3 16 16 H 1.09005 * 109.46832 * 322.61346 * 15 13 4 17 17 C 1.52992 * 109.47257 * 82.61434 * 15 13 4 18 18 N 1.46499 * 109.46942 * 202.61704 * 15 13 4 19 19 C 1.34784 * 119.99733 * 154.99703 * 18 15 13 20 20 O 1.21696 * 119.99788 * 359.97438 * 19 18 15 21 21 C 1.46653 * 119.99955 * 179.97438 * 19 18 15 22 22 C 1.36543 * 125.99016 * 179.97438 * 21 19 18 23 23 C 1.40362 * 106.71073 * 179.97438 * 22 21 19 24 24 C 1.35131 * 107.11284 * 0.02562 * 23 22 21 25 25 O 1.33928 * 108.76729 * 359.75530 * 24 23 22 26 26 H 1.08997 * 109.47113 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46826 * 299.99860 * 1 2 3 28 28 H 1.09000 * 109.46798 * 60.00195 * 1 2 3 29 29 H 1.09006 * 109.47190 * 239.99900 * 2 1 3 30 30 H 1.09003 * 109.47323 * 120.00339 * 2 1 3 31 31 H 1.08996 * 109.47211 * 62.32467 * 3 2 1 32 32 H 1.09003 * 109.46704 * 302.32854 * 3 2 1 33 33 H 0.97000 * 119.99708 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.47293 * 304.41662 * 17 15 13 35 35 H 1.08999 * 109.47360 * 64.41778 * 17 15 13 36 36 H 1.09003 * 109.47351 * 184.41543 * 17 15 13 37 37 H 0.96991 * 120.00469 * 334.99786 * 18 15 13 38 38 H 1.08001 * 126.64019 * 359.97438 * 22 21 19 39 39 H 1.07992 * 126.44232 * 179.97438 * 23 22 21 40 40 H 1.07998 * 125.61118 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5039 1.4428 -0.0561 5 6 4.1439 1.6106 -1.2569 6 1 5.1828 1.9048 -1.2788 7 6 3.4542 1.4076 -2.4460 8 7 2.2215 0.9530 -2.4213 9 14 4.2794 1.7812 -4.0798 10 1 5.6576 2.2774 -3.8362 11 1 4.3367 0.5443 -4.8996 12 1 3.4998 2.8183 -4.8023 13 6 4.2217 1.2783 1.0727 14 8 3.6610 1.2391 2.1475 15 6 5.7208 1.1431 0.9995 16 1 5.9908 0.5644 0.1161 17 6 6.3545 2.5329 0.9120 18 7 6.2085 0.4587 2.1995 19 6 7.3743 -0.2169 2.1631 20 8 8.0214 -0.2587 1.1333 21 6 7.8628 -0.9016 3.3644 22 6 9.0207 -1.6183 3.4646 23 6 9.0888 -2.0929 4.7838 24 6 7.9830 -1.6512 5.4228 25 8 7.2493 -0.9296 4.5657 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.7112 1.9442 0.9101 32 1 1.6431 1.9682 -0.8684 33 1 1.7400 0.8117 -3.2514 34 1 5.9330 3.0717 0.0634 35 1 6.1502 3.0839 1.8300 36 1 7.4320 2.4333 0.7803 37 1 5.6926 0.4916 3.0201 38 1 9.7441 -1.7872 2.6806 39 1 9.8762 -2.6980 5.2080 40 1 7.7344 -1.8444 6.4559 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048953400.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:32 Heat of formation + Delta-G solvation = -47.928219 kcal Electronic energy + Delta-G solvation = -24073.025533 eV Core-core repulsion = 20469.220765 eV Total energy + Delta-G solvation = -3603.804768 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.67657 -39.61410 -38.39398 -35.53931 -34.36194 -33.08503 -32.36462 -31.63542 -30.68219 -29.17237 -25.89981 -24.97799 -23.95913 -22.26281 -21.73779 -20.50385 -19.95491 -19.26722 -18.67281 -17.21893 -16.49694 -16.30361 -15.65842 -15.34865 -14.54878 -14.41992 -14.30768 -13.80569 -13.73705 -13.51429 -13.14532 -13.02861 -12.85211 -12.69960 -12.43796 -11.95853 -11.90504 -11.39592 -11.33670 -11.03306 -10.96848 -10.69456 -10.48841 -10.34927 -10.21768 -10.11530 -10.03374 -9.65002 -9.01735 -8.86238 -8.66636 -8.39279 -7.77680 -6.36136 -4.03706 1.10766 2.31364 2.71429 3.05798 3.18746 3.21961 3.33740 3.41887 3.80392 4.02527 4.67951 4.74162 4.84243 4.99970 5.03534 5.58320 5.69526 5.73377 5.81364 5.86043 5.88224 6.10888 6.15746 6.25592 6.28323 6.36276 6.44921 6.62226 6.66840 6.70559 6.83924 6.89753 7.01677 7.07792 7.27686 7.47782 7.68648 7.78033 7.82478 8.35142 8.38162 8.97116 9.40301 9.78954 10.55521 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.017868 B = 0.004454 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.641019 B = 6284.590836 C = 7214.198863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 C 0.138 3.862 4 N -0.430 5.430 5 C -0.336 4.336 6 H 0.103 0.897 7 C 0.037 3.963 8 N -0.860 5.860 9 Si 0.924 3.076 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.448 3.552 14 O -0.609 6.609 15 C 0.137 3.863 16 H 0.112 0.888 17 C -0.154 4.154 18 N -0.693 5.693 19 C 0.598 3.402 20 O -0.525 6.525 21 C -0.066 4.066 22 C -0.129 4.129 23 C -0.227 4.227 24 C -0.013 4.013 25 O -0.161 6.161 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.029 0.971 31 H 0.032 0.968 32 H 0.109 0.891 33 H 0.268 0.732 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.411 0.589 38 H 0.160 0.840 39 H 0.155 0.845 40 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.184 -2.839 8.771 11.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.152 4.152 3 C 0.015 3.985 4 N -0.146 5.146 5 C -0.463 4.463 6 H 0.120 0.880 7 C -0.168 4.168 8 N -0.499 5.499 9 Si 0.751 3.249 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.206 1.206 13 C 0.235 3.765 14 O -0.497 6.497 15 C 0.029 3.971 16 H 0.129 0.871 17 C -0.213 4.213 18 N -0.344 5.344 19 C 0.383 3.617 20 O -0.404 6.404 21 C -0.119 4.119 22 C -0.150 4.150 23 C -0.246 4.246 24 C -0.083 4.083 25 O -0.055 6.055 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.127 0.873 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.248 0.752 38 H 0.177 0.823 39 H 0.172 0.828 40 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 6.859 -2.737 8.398 11.183 hybrid contribution 0.287 -0.087 -0.418 0.515 sum 7.146 -2.824 7.980 11.078 Atomic orbital electron populations 1.21559 0.97430 0.99692 1.00504 1.21708 0.93949 0.98391 1.01186 1.21415 0.79604 0.97032 1.00453 1.43733 1.05768 1.59399 1.05684 1.19886 0.97621 1.46330 0.82482 0.87979 1.25334 0.96009 0.95641 0.99818 1.70095 1.10179 1.42019 1.27608 0.85885 0.79421 0.78233 0.81366 1.19131 1.20558 1.20566 1.19886 0.88168 0.83600 0.84831 1.90514 1.72183 1.58278 1.28679 1.20729 0.93265 0.94785 0.88274 0.87061 1.22054 1.00750 0.95577 1.02881 1.45798 1.21711 1.51247 1.15690 1.16541 0.81607 0.78463 0.85068 1.90871 1.57442 1.62437 1.29618 1.22266 0.96357 1.07703 0.85530 1.21947 0.97086 0.98071 0.97856 1.21828 1.01052 1.07081 0.94641 1.24387 0.92002 0.95914 0.95989 1.84117 1.45404 1.57029 1.18984 0.94426 0.94487 0.92713 0.89271 0.95243 0.94949 0.87334 0.92117 0.90062 0.92600 0.92124 0.75193 0.82272 0.82767 0.77523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.91 37.16 0.37 -2.17 16 2 C -0.11 -2.58 5.60 -26.73 -0.15 -2.73 16 3 C 0.14 3.29 4.55 -4.05 -0.02 3.27 16 4 N -0.43 -10.54 2.64 -114.82 -0.30 -10.84 16 5 C -0.34 -8.14 8.60 -14.93 -0.13 -8.26 16 6 H 0.10 2.36 5.23 -52.49 -0.27 2.09 16 7 C 0.04 0.87 5.25 -17.47 -0.09 0.78 16 8 N -0.86 -20.79 7.99 55.50 0.44 -20.34 16 9 Si 0.92 18.91 29.56 -169.99 -5.02 13.89 16 10 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 11 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 12 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 13 C 0.45 10.62 6.80 -10.99 -0.07 10.55 16 14 O -0.61 -15.47 15.63 5.55 0.09 -15.38 16 15 C 0.14 2.83 2.13 -69.09 -0.15 2.68 16 16 H 0.11 2.47 6.62 -51.93 -0.34 2.13 16 17 C -0.15 -2.81 9.18 37.15 0.34 -2.47 16 18 N -0.69 -13.08 5.04 -56.25 -0.28 -13.36 16 19 C 0.60 10.93 7.75 -12.86 -0.10 10.83 16 20 O -0.53 -10.79 16.53 5.19 0.09 -10.70 16 21 C -0.07 -1.02 7.13 -36.80 -0.26 -1.28 16 22 C -0.13 -1.69 10.62 -39.39 -0.42 -2.11 16 23 C -0.23 -2.31 10.87 -39.89 -0.43 -2.75 16 24 C -0.01 -0.13 12.08 29.63 0.36 0.23 16 25 O -0.16 -2.21 10.40 5.01 0.05 -2.16 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.09 2.20 6.40 -51.93 -0.33 1.87 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.03 0.78 7.57 -51.93 -0.39 0.39 16 32 H 0.11 2.69 5.81 -51.93 -0.30 2.39 16 33 H 0.27 6.17 8.31 -40.82 -0.34 5.83 16 34 H 0.08 1.49 6.58 -51.93 -0.34 1.15 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.41 7.60 7.51 -40.82 -0.31 7.30 16 38 H 0.16 1.94 8.06 -52.49 -0.42 1.52 16 39 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.21 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 336.64 15.07 5.07 5.07 Total: -1.00 -28.62 336.64 -5.86 -34.48 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -5.23 Total: 12.80 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -0.76 Total: 6.56 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -0.14 Total: -44.55 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: 0.22 Total: -28.24 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.62 -5.86 -34.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048953400.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.446 kcal (2) G-P(sol) polarization free energy of solvation -28.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds