Wall clock time and date at job start Tue Mar 31 2020 07:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47404 * 2 1 4 4 N 1.46491 * 109.47295 * 182.32817 * 3 2 1 5 5 C 1.37101 * 119.99995 * 97.34013 * 4 3 2 6 6 H 1.08000 * 120.00331 * 161.70889 * 5 4 3 7 7 C 1.38949 * 119.99831 * 341.97874 * 5 4 3 8 8 N 1.31413 * 120.00293 * 354.60956 * 7 5 4 9 9 Si 1.86807 * 119.99873 * 174.60305 * 7 5 4 10 10 H 1.48500 * 109.47089 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46953 * 120.00365 * 9 7 5 12 12 H 1.48502 * 109.47131 * 240.00168 * 9 7 5 13 13 C 1.34773 * 120.00307 * 277.33808 * 4 3 2 14 14 O 1.21292 * 119.99815 * 353.99511 * 13 4 3 15 15 C 1.50703 * 120.00442 * 174.00215 * 13 4 3 16 16 H 1.09005 * 109.46832 * 322.61346 * 15 13 4 17 17 C 1.52992 * 109.47257 * 82.61434 * 15 13 4 18 18 N 1.46499 * 109.46942 * 202.61704 * 15 13 4 19 19 C 1.34784 * 119.99733 * 154.99703 * 18 15 13 20 20 O 1.21696 * 119.99788 * 359.97438 * 19 18 15 21 21 C 1.46653 * 119.99955 * 179.97438 * 19 18 15 22 22 C 1.36543 * 125.99016 * 179.97438 * 21 19 18 23 23 C 1.40362 * 106.71073 * 179.97438 * 22 21 19 24 24 C 1.35131 * 107.11284 * 0.02562 * 23 22 21 25 25 O 1.33928 * 108.76729 * 359.75530 * 24 23 22 26 26 H 1.08997 * 109.47113 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46826 * 299.99860 * 1 2 3 28 28 H 1.09000 * 109.46798 * 60.00195 * 1 2 3 29 29 H 1.09006 * 109.47190 * 239.99900 * 2 1 3 30 30 H 1.09003 * 109.47323 * 120.00339 * 2 1 3 31 31 H 1.08996 * 109.47211 * 62.32467 * 3 2 1 32 32 H 1.09003 * 109.46704 * 302.32854 * 3 2 1 33 33 H 0.97000 * 119.99708 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.47293 * 304.41662 * 17 15 13 35 35 H 1.08999 * 109.47360 * 64.41778 * 17 15 13 36 36 H 1.09003 * 109.47351 * 184.41543 * 17 15 13 37 37 H 0.96991 * 120.00469 * 334.99786 * 18 15 13 38 38 H 1.08001 * 126.64019 * 359.97438 * 22 21 19 39 39 H 1.07992 * 126.44232 * 179.97438 * 23 22 21 40 40 H 1.07998 * 125.61118 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5039 1.4428 -0.0561 5 6 4.1439 1.6106 -1.2569 6 1 5.1828 1.9048 -1.2788 7 6 3.4542 1.4076 -2.4460 8 7 2.2215 0.9530 -2.4213 9 14 4.2794 1.7812 -4.0798 10 1 5.6576 2.2774 -3.8362 11 1 4.3367 0.5443 -4.8996 12 1 3.4998 2.8183 -4.8023 13 6 4.2217 1.2783 1.0727 14 8 3.6610 1.2391 2.1475 15 6 5.7208 1.1431 0.9995 16 1 5.9908 0.5644 0.1161 17 6 6.3545 2.5329 0.9120 18 7 6.2085 0.4587 2.1995 19 6 7.3743 -0.2169 2.1631 20 8 8.0214 -0.2587 1.1333 21 6 7.8628 -0.9016 3.3644 22 6 9.0207 -1.6183 3.4646 23 6 9.0888 -2.0929 4.7838 24 6 7.9830 -1.6512 5.4228 25 8 7.2493 -0.9296 4.5657 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.7112 1.9442 0.9101 32 1 1.6431 1.9682 -0.8684 33 1 1.7400 0.8117 -3.2514 34 1 5.9330 3.0717 0.0634 35 1 6.1502 3.0839 1.8300 36 1 7.4320 2.4333 0.7803 37 1 5.6926 0.4916 3.0201 38 1 9.7441 -1.7872 2.6806 39 1 9.8762 -2.6980 5.2080 40 1 7.7344 -1.8444 6.4559 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048953400.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:31 Heat of formation + Delta-G solvation = -65.773828 kcal Electronic energy + Delta-G solvation = -24073.799377 eV Core-core repulsion = 20469.220765 eV Total energy + Delta-G solvation = -3604.578612 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.64577 -41.25359 -40.06437 -37.35097 -36.00856 -34.17357 -34.00031 -33.46743 -32.10971 -30.34554 -27.67838 -26.75365 -25.38835 -23.67042 -22.69582 -22.17337 -21.31624 -21.05095 -20.04847 -18.86468 -17.93269 -17.38090 -17.11359 -16.95726 -16.17269 -16.07066 -15.95068 -15.50063 -15.29546 -15.21033 -14.55931 -14.21654 -14.06421 -13.92588 -13.66407 -13.57454 -13.44156 -13.12130 -13.07163 -12.69706 -12.60279 -12.41414 -12.27510 -12.07837 -11.95134 -11.50151 -11.48172 -11.04186 -10.79575 -10.54315 -10.20990 -9.68880 -9.64651 -8.20362 -5.94045 0.02014 1.38848 1.44042 1.50485 1.60477 1.63416 1.88621 2.08293 2.16691 2.32281 2.94558 3.14032 3.69278 3.97063 4.01297 4.12482 4.21491 4.24271 4.40786 4.50847 4.61649 4.69639 4.72966 4.79469 4.89094 4.92158 4.95302 5.09489 5.11439 5.19256 5.25701 5.34014 5.41651 5.44592 5.60998 5.79578 5.85774 5.89758 6.39089 6.49449 6.92934 7.09018 7.51833 7.90447 8.71693 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.017868 B = 0.004454 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.641019 B = 6284.590836 C = 7214.198863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C 0.140 3.860 4 N -0.440 5.440 5 C -0.357 4.357 6 H 0.109 0.891 7 C 0.001 3.999 8 N -0.875 5.875 9 Si 0.988 3.012 10 H -0.263 1.263 11 H -0.283 1.283 12 H -0.275 1.275 13 C 0.439 3.561 14 O -0.632 6.632 15 C 0.145 3.855 16 H 0.093 0.907 17 C -0.143 4.143 18 N -0.695 5.695 19 C 0.598 3.402 20 O -0.558 6.558 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.230 4.230 24 C 0.008 3.992 25 O -0.177 6.177 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.011 0.989 31 H 0.024 0.976 32 H 0.101 0.899 33 H 0.271 0.729 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.412 0.588 38 H 0.163 0.837 39 H 0.190 0.810 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.127 -3.460 9.767 13.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.017 3.983 4 N -0.155 5.155 5 C -0.484 4.484 6 H 0.126 0.874 7 C -0.202 4.202 8 N -0.513 5.513 9 Si 0.812 3.188 10 H -0.187 1.187 11 H -0.209 1.209 12 H -0.200 1.200 13 C 0.227 3.773 14 O -0.521 6.521 15 C 0.037 3.963 16 H 0.111 0.889 17 C -0.202 4.202 18 N -0.346 5.346 19 C 0.387 3.613 20 O -0.439 6.439 21 C -0.163 4.163 22 C -0.140 4.140 23 C -0.248 4.248 24 C -0.061 4.061 25 O -0.073 6.073 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.030 0.970 31 H 0.042 0.958 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.249 0.751 38 H 0.180 0.820 39 H 0.207 0.793 40 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 7.798 -3.357 9.403 12.669 hybrid contribution 0.006 0.016 -0.605 0.605 sum 7.804 -3.341 8.798 12.226 Atomic orbital electron populations 1.21471 0.94437 1.01202 1.01106 1.21567 0.96553 0.96990 0.99096 1.21380 0.79805 0.97626 0.99454 1.43949 1.06086 1.59303 1.06186 1.20172 0.98175 1.47347 0.82698 0.87365 1.26077 0.96567 0.95171 1.02397 1.70176 1.10915 1.41763 1.28464 0.84935 0.78722 0.77767 0.77406 1.18654 1.20857 1.20041 1.20370 0.89456 0.83141 0.84323 1.90477 1.72990 1.59322 1.29332 1.20512 0.91295 0.95970 0.88485 0.88940 1.21968 1.01070 0.94049 1.03111 1.45757 1.22197 1.51709 1.14965 1.16880 0.80788 0.77783 0.85897 1.90829 1.58184 1.63687 1.31216 1.21742 0.98069 1.10776 0.85737 1.22271 0.95839 0.96407 0.99451 1.22234 1.02184 1.07313 0.93070 1.25469 0.90819 0.92839 0.96995 1.84102 1.46266 1.58090 1.18843 0.92479 0.93353 0.92570 0.91357 0.97046 0.95796 0.88117 0.91826 0.90333 0.91862 0.91060 0.75078 0.81953 0.79255 0.72818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.63 9.91 71.98 0.71 -3.91 16 2 C -0.10 -4.78 5.60 30.60 0.17 -4.61 16 3 C 0.14 6.86 4.55 86.38 0.39 7.25 16 4 N -0.44 -22.15 2.64 -635.56 -1.68 -23.83 16 5 C -0.36 -17.59 8.60 84.04 0.72 -16.86 16 6 H 0.11 5.08 5.23 -2.91 -0.02 5.07 16 7 C 0.00 0.04 5.25 84.93 0.45 0.49 16 8 N -0.88 -42.50 7.99 21.66 0.17 -42.32 16 9 Si 0.99 38.61 29.56 68.60 2.03 40.64 16 10 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 11 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 12 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 13 C 0.44 21.45 6.80 87.66 0.60 22.04 16 14 O -0.63 -33.00 15.63 -3.07 -0.05 -33.05 16 15 C 0.15 6.19 2.13 44.24 0.09 6.28 16 16 H 0.09 4.29 6.62 -2.38 -0.02 4.27 16 17 C -0.14 -5.28 9.18 71.98 0.66 -4.62 16 18 N -0.70 -27.06 5.04 -450.09 -2.27 -29.33 16 19 C 0.60 22.46 7.75 86.44 0.67 23.13 16 20 O -0.56 -23.63 16.53 -4.33 -0.07 -23.70 16 21 C -0.11 -3.42 7.13 24.07 0.17 -3.25 16 22 C -0.12 -2.96 10.62 22.39 0.24 -2.72 16 23 C -0.23 -3.89 10.87 22.07 0.24 -3.65 16 24 C 0.01 0.13 12.08 67.10 0.81 0.94 16 25 O -0.18 -4.65 10.40 -5.00 -0.05 -4.71 16 26 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.07 3.44 6.40 -2.38 -0.02 3.42 16 30 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.02 1.18 7.57 -2.39 -0.02 1.17 16 32 H 0.10 5.08 5.81 -2.39 -0.01 5.07 16 33 H 0.27 12.45 8.31 -92.71 -0.77 11.68 16 34 H 0.08 2.91 6.58 -2.38 -0.02 2.89 16 35 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.41 15.74 7.51 -92.72 -0.70 15.05 16 38 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 39 H 0.19 1.81 8.06 -2.91 -0.02 1.78 16 40 H 0.26 1.42 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -63.41 336.64 4.38 -59.03 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: 0.37 Total: 36.75 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: 5.93 Total: 20.51 kcal Atomic # 7 Polarization: -91.70 SS G_CDS: -3.78 Total: -95.48 kcal Atomic # 8 Polarization: -61.28 SS G_CDS: -0.17 Total: -61.45 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -63.41 4.38 -59.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048953400.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.742 kcal (2) G-P(sol) polarization free energy of solvation -63.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds