Wall clock time and date at job start Tue Mar 31 2020 07:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99944 * 2 1 4 4 C 1.52998 * 109.47471 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47607 * 175.00448 * 4 3 2 6 6 C 1.53002 * 109.47220 * 54.99796 * 4 3 2 7 7 N 1.46506 * 109.46784 * 295.00366 * 4 3 2 8 8 C 1.34778 * 119.99665 * 205.00074 * 7 4 3 9 9 O 1.21587 * 119.99998 * 0.26734 * 8 7 4 10 10 N 1.34779 * 119.99811 * 179.97438 * 8 7 4 11 11 C 1.39946 * 119.99600 * 174.82986 * 10 8 7 12 12 C 1.38951 * 120.03798 * 326.19270 * 11 10 8 13 13 C 1.38168 * 120.06655 * 179.71930 * 12 11 10 14 14 C 1.38173 * 120.13591 * 0.55753 * 13 12 11 15 15 C 1.38907 * 120.06813 * 359.71703 * 14 13 12 16 16 O 1.35753 * 120.03432 * 179.97438 * 15 14 13 17 17 C 1.34834 * 117.00120 * 185.92883 * 16 15 14 18 18 H 1.07999 * 119.99871 * 5.41972 * 17 16 15 19 19 C 1.38647 * 119.99688 * 185.41490 * 17 16 15 20 20 N 1.31559 * 120.00273 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99940 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47172 * 59.99423 * 21 19 17 23 23 H 1.48501 * 109.47097 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46632 * 300.00057 * 21 19 17 25 25 C 1.38709 * 120.03144 * 146.46572 * 11 10 8 26 26 H 1.08999 * 109.46947 * 299.99856 * 1 2 3 27 27 H 1.09001 * 109.47240 * 59.99842 * 1 2 3 28 28 H 1.08996 * 109.46711 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46741 * 59.99938 * 3 2 1 30 30 H 1.09004 * 109.47624 * 300.00398 * 3 2 1 31 31 H 1.08999 * 109.47363 * 300.00802 * 6 4 3 32 32 H 1.09001 * 109.46578 * 60.00621 * 6 4 3 33 33 H 1.08994 * 109.47121 * 180.02562 * 6 4 3 34 34 H 0.96991 * 120.00118 * 25.00035 * 7 4 3 35 35 H 0.96997 * 119.99859 * 354.83252 * 10 8 7 36 36 H 1.07995 * 119.97101 * 359.97438 * 12 11 10 37 37 H 1.07997 * 119.93398 * 180.25219 * 13 12 11 38 38 H 1.07996 * 119.96301 * 179.70302 * 14 13 12 39 39 H 0.97005 * 119.99899 * 180.02562 * 20 19 17 40 40 H 1.08002 * 120.06996 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.9784 2.1766 -0.0901 6 6 3.9781 0.3199 -1.1826 7 7 3.9766 0.5640 1.2509 8 6 5.2208 0.7941 1.7152 9 8 5.9754 1.5207 1.0979 10 7 5.6266 0.2234 2.8668 11 6 6.9509 0.3738 3.2936 12 6 7.9783 0.4452 2.3609 13 6 9.2854 0.5994 2.7813 14 6 9.5763 0.6716 4.1301 15 6 8.5542 0.5951 5.0676 16 8 8.8408 0.6655 6.3927 17 6 7.8212 0.4621 7.2512 18 1 6.8514 0.1682 6.8778 19 6 8.0180 0.6300 8.6133 20 7 9.1994 0.9883 9.0681 21 14 6.6057 0.3474 9.8029 22 1 6.1271 -1.0530 9.6794 23 1 7.0719 0.5912 11.1916 24 1 5.4952 1.2800 9.4831 25 6 7.2397 0.4460 4.6483 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3632 -1.0276 -0.0005 29 1 1.6885 1.8463 0.8900 30 1 1.6886 1.8465 -0.8899 31 1 3.5351 -0.6720 -1.0931 32 1 3.6498 0.7818 -2.1137 33 1 5.0646 0.2335 -1.1828 34 1 3.3734 -0.0125 1.7453 35 1 5.0007 -0.2915 3.3998 36 1 7.7547 0.3842 1.3061 37 1 10.0819 0.6588 2.0544 38 1 10.5995 0.7874 4.4558 39 1 9.3371 1.1054 10.0211 40 1 6.4433 0.3867 5.3754 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057828657.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:41 Heat of formation + Delta-G solvation = -72.031140 kcal Electronic energy + Delta-G solvation = -22993.209819 eV Core-core repulsion = 19388.359870 eV Total energy + Delta-G solvation = -3604.849949 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.40829 -38.94015 -38.31798 -36.59387 -35.17945 -34.15363 -32.22030 -31.19387 -29.12651 -28.23700 -27.68803 -26.02891 -25.26642 -22.85048 -21.75166 -20.99041 -20.38008 -18.65752 -17.83277 -17.39771 -16.91676 -16.41027 -15.78822 -15.36139 -15.15265 -14.94828 -14.80338 -14.29901 -14.10327 -13.85326 -13.55478 -13.42565 -12.96419 -12.86298 -12.54849 -12.23892 -12.15728 -11.75058 -11.57061 -11.43004 -11.21938 -11.10424 -10.91505 -10.77286 -10.45395 -10.12245 -9.97035 -9.60436 -9.42107 -9.14906 -8.77204 -7.65257 -7.08496 -6.41855 -4.01507 2.11689 2.45178 2.72602 3.13032 3.14063 3.17236 3.29610 3.43296 3.98091 4.25965 4.49521 4.66280 4.73778 4.88870 4.96010 5.02834 5.13303 5.19047 5.28403 5.32709 5.33595 5.56013 5.73126 5.82577 6.06033 6.13321 6.16462 6.30605 6.32052 6.44604 6.61910 6.70203 6.86800 7.05888 7.15321 7.34462 7.39113 7.47734 7.88232 8.02441 8.09868 8.69976 9.03517 9.74948 10.76334 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.017165 B = 0.003371 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.819915 B = 8304.273976 C = 9759.905119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.051 3.949 4 C 0.166 3.834 5 H 0.101 0.899 6 C -0.160 4.160 7 N -0.740 5.740 8 C 0.703 3.297 9 O -0.572 6.572 10 N -0.683 5.683 11 C 0.200 3.800 12 C -0.204 4.204 13 C -0.063 4.063 14 C -0.203 4.203 15 C 0.169 3.831 16 O -0.177 6.177 17 C -0.391 4.391 18 H 0.089 0.911 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.940 3.060 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.271 1.271 25 C -0.258 4.258 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.399 0.601 35 H 0.402 0.598 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.270 0.730 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.347 -2.092 -16.272 23.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.026 4.026 4 C 0.060 3.940 5 H 0.119 0.881 6 C -0.219 4.219 7 N -0.396 5.396 8 C 0.404 3.596 9 O -0.448 6.448 10 N -0.329 5.329 11 C 0.106 3.894 12 C -0.225 4.225 13 C -0.082 4.082 14 C -0.223 4.223 15 C 0.115 3.885 16 O -0.081 6.081 17 C -0.468 4.468 18 H 0.106 0.894 19 C -0.165 4.165 20 N -0.499 5.499 21 Si 0.764 3.236 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.196 1.196 25 C -0.280 4.280 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.233 0.767 35 H 0.237 0.763 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.080 0.920 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.267 -1.494 -16.525 22.547 hybrid contribution -1.739 -0.378 1.137 2.112 sum -17.005 -1.872 -15.387 23.010 Atomic orbital electron populations 1.22753 0.80870 1.02887 1.00036 1.87894 1.19762 1.27507 1.95428 1.22903 0.93111 0.85285 1.01295 1.20862 0.91132 0.98350 0.83633 0.88092 1.22100 1.02250 1.00731 0.96785 1.45137 1.14129 1.54132 1.26225 1.15916 0.82135 0.80440 0.81104 1.90940 1.53796 1.40655 1.59449 1.42598 1.11505 1.55348 1.23464 1.17178 0.81530 0.98382 0.92289 1.20557 0.91608 1.11675 0.98702 1.20524 0.95552 0.97683 0.94392 1.20233 0.98143 1.12258 0.91662 1.19064 0.91720 0.92089 0.85634 1.84022 1.36344 1.77597 1.10091 1.21213 0.91206 1.47775 0.86592 0.89354 1.25263 0.97977 0.96583 0.96664 1.70029 1.21583 1.43456 1.14790 0.85812 0.79764 0.79035 0.78960 1.19551 1.20291 1.19626 1.20777 0.97620 1.15909 0.93705 0.93990 0.94045 0.89539 0.92439 0.91644 0.91627 0.92002 0.91863 0.76653 0.76341 0.86268 0.86678 0.86442 0.92010 0.85352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.14 9.55 -35.23 -0.34 -3.47 16 3 C 0.05 0.38 5.68 37.16 0.21 0.59 16 4 C 0.17 1.64 2.98 -67.93 -0.20 1.44 16 5 H 0.10 1.11 7.57 -51.93 -0.39 0.72 16 6 C -0.16 -1.57 9.29 37.16 0.35 -1.22 16 7 N -0.74 -8.38 5.06 -58.67 -0.30 -8.68 16 8 C 0.70 10.97 8.26 -86.92 -0.72 10.26 16 9 O -0.57 -10.98 13.73 5.29 0.07 -10.91 16 10 N -0.68 -10.76 5.35 -14.24 -0.08 -10.84 16 11 C 0.20 3.95 6.27 -83.71 -0.52 3.43 16 12 C -0.20 -4.06 8.65 -39.34 -0.34 -4.40 16 13 C -0.06 -1.22 10.03 -39.63 -0.40 -1.61 16 14 C -0.20 -4.46 9.99 -39.36 -0.39 -4.85 16 15 C 0.17 4.17 6.64 -39.14 -0.26 3.91 16 16 O -0.18 -5.09 9.76 0.03 0.00 -5.09 16 17 C -0.39 -10.94 9.44 30.88 0.29 -10.65 16 18 H 0.09 2.26 5.30 -52.49 -0.28 1.98 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -25.44 13.67 55.48 0.76 -24.68 16 21 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 C -0.26 -5.70 9.04 -39.21 -0.35 -6.06 16 26 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.65 7.56 -51.93 -0.39 0.26 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.40 3.71 8.40 -40.82 -0.34 3.37 16 35 H 0.40 5.04 8.83 -40.82 -0.36 4.68 16 36 H 0.12 2.34 6.45 -52.49 -0.34 2.00 16 37 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 38 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.13 2.77 5.72 -52.49 -0.30 2.47 16 LS Contribution 342.02 15.07 5.15 5.15 Total: -1.00 -33.89 342.02 -6.42 -40.31 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -5.35 Total: 9.72 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -1.33 Total: -6.91 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.39 Total: -44.20 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.26 Total: -19.47 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.89 -6.42 -40.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057828657.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.725 kcal (2) G-P(sol) polarization free energy of solvation -33.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds