Wall clock time and date at job start Tue Mar 31 2020 07:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99944 * 2 1 4 4 C 1.52998 * 109.47471 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47607 * 175.00448 * 4 3 2 6 6 C 1.53002 * 109.47220 * 54.99796 * 4 3 2 7 7 N 1.46506 * 109.46784 * 295.00366 * 4 3 2 8 8 C 1.34778 * 119.99665 * 205.00074 * 7 4 3 9 9 O 1.21587 * 119.99998 * 0.26734 * 8 7 4 10 10 N 1.34779 * 119.99811 * 179.97438 * 8 7 4 11 11 C 1.39946 * 119.99600 * 174.82986 * 10 8 7 12 12 C 1.38951 * 120.03798 * 326.19270 * 11 10 8 13 13 C 1.38168 * 120.06655 * 179.71930 * 12 11 10 14 14 C 1.38173 * 120.13591 * 0.55753 * 13 12 11 15 15 C 1.38907 * 120.06813 * 359.71703 * 14 13 12 16 16 O 1.35753 * 120.03432 * 179.97438 * 15 14 13 17 17 C 1.34834 * 117.00120 * 185.92883 * 16 15 14 18 18 H 1.07999 * 119.99871 * 5.41972 * 17 16 15 19 19 C 1.38647 * 119.99688 * 185.41490 * 17 16 15 20 20 N 1.31559 * 120.00273 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99940 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47172 * 59.99423 * 21 19 17 23 23 H 1.48501 * 109.47097 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46632 * 300.00057 * 21 19 17 25 25 C 1.38709 * 120.03144 * 146.46572 * 11 10 8 26 26 H 1.08999 * 109.46947 * 299.99856 * 1 2 3 27 27 H 1.09001 * 109.47240 * 59.99842 * 1 2 3 28 28 H 1.08996 * 109.46711 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46741 * 59.99938 * 3 2 1 30 30 H 1.09004 * 109.47624 * 300.00398 * 3 2 1 31 31 H 1.08999 * 109.47363 * 300.00802 * 6 4 3 32 32 H 1.09001 * 109.46578 * 60.00621 * 6 4 3 33 33 H 1.08994 * 109.47121 * 180.02562 * 6 4 3 34 34 H 0.96991 * 120.00118 * 25.00035 * 7 4 3 35 35 H 0.96997 * 119.99859 * 354.83252 * 10 8 7 36 36 H 1.07995 * 119.97101 * 359.97438 * 12 11 10 37 37 H 1.07997 * 119.93398 * 180.25219 * 13 12 11 38 38 H 1.07996 * 119.96301 * 179.70302 * 14 13 12 39 39 H 0.97005 * 119.99899 * 180.02562 * 20 19 17 40 40 H 1.08002 * 120.06996 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.9784 2.1766 -0.0901 6 6 3.9781 0.3199 -1.1826 7 7 3.9766 0.5640 1.2509 8 6 5.2208 0.7941 1.7152 9 8 5.9754 1.5207 1.0979 10 7 5.6266 0.2234 2.8668 11 6 6.9509 0.3738 3.2936 12 6 7.9783 0.4452 2.3609 13 6 9.2854 0.5994 2.7813 14 6 9.5763 0.6716 4.1301 15 6 8.5542 0.5951 5.0676 16 8 8.8408 0.6655 6.3927 17 6 7.8212 0.4621 7.2512 18 1 6.8514 0.1682 6.8778 19 6 8.0180 0.6300 8.6133 20 7 9.1994 0.9883 9.0681 21 14 6.6057 0.3474 9.8029 22 1 6.1271 -1.0530 9.6794 23 1 7.0719 0.5912 11.1916 24 1 5.4952 1.2800 9.4831 25 6 7.2397 0.4460 4.6483 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3632 -1.0276 -0.0005 29 1 1.6885 1.8463 0.8900 30 1 1.6886 1.8465 -0.8899 31 1 3.5351 -0.6720 -1.0931 32 1 3.6498 0.7818 -2.1137 33 1 5.0646 0.2335 -1.1828 34 1 3.3734 -0.0125 1.7453 35 1 5.0007 -0.2915 3.3998 36 1 7.7547 0.3842 1.3061 37 1 10.0819 0.6588 2.0544 38 1 10.5995 0.7874 4.4558 39 1 9.3371 1.1054 10.0211 40 1 6.4433 0.3867 5.3754 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057828657.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:40 Heat of formation + Delta-G solvation = -96.787021 kcal Electronic energy + Delta-G solvation = -22994.283314 eV Core-core repulsion = 19388.359870 eV Total energy + Delta-G solvation = -3605.923445 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.72944 -40.52023 -39.18900 -38.17369 -36.21441 -35.61941 -34.21980 -32.25385 -30.79119 -29.83138 -28.25360 -27.27918 -26.57598 -24.15737 -23.47392 -22.14043 -21.62737 -20.16023 -19.41611 -19.06454 -17.75657 -17.22902 -16.88525 -16.79740 -16.46734 -16.13767 -16.05977 -15.84939 -15.55561 -15.47138 -15.03901 -14.55768 -14.35935 -14.10136 -13.64915 -13.50159 -13.20031 -13.08755 -12.76315 -12.75624 -12.59920 -12.45202 -12.14040 -12.10206 -11.98639 -11.48874 -11.32702 -11.08886 -10.71188 -10.61480 -10.18584 -9.31229 -8.82064 -8.44653 -6.13418 0.47092 0.72983 1.36668 1.47575 1.53173 1.55341 2.06128 2.19599 2.81123 2.87109 3.16677 3.19934 3.51676 3.80398 4.08706 4.13900 4.35369 4.35917 4.46932 4.49419 4.53214 4.61163 4.65181 4.67094 4.75111 4.81419 4.93310 4.97523 5.05359 5.12665 5.34718 5.36894 5.49619 5.51333 5.69661 5.71323 5.97685 6.03502 6.20237 6.23051 6.95654 6.99716 7.46555 7.79682 8.78350 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.017165 B = 0.003371 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.819915 B = 8304.273976 C = 9759.905119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.059 3.941 4 C 0.160 3.840 5 H 0.090 0.910 6 C -0.153 4.153 7 N -0.720 5.720 8 C 0.702 3.298 9 O -0.609 6.609 10 N -0.675 5.675 11 C 0.207 3.793 12 C -0.199 4.199 13 C -0.050 4.050 14 C -0.216 4.216 15 C 0.135 3.865 16 O -0.226 6.226 17 C -0.413 4.413 18 H 0.103 0.897 19 C -0.023 4.023 20 N -0.921 5.921 21 Si 1.018 2.982 22 H -0.255 1.255 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.261 4.261 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.038 0.962 34 H 0.412 0.588 35 H 0.418 0.582 36 H 0.128 0.872 37 H 0.154 0.846 38 H 0.119 0.881 39 H 0.273 0.727 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.200 -2.558 -17.887 26.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C -0.018 4.018 4 C 0.055 3.945 5 H 0.108 0.892 6 C -0.212 4.212 7 N -0.377 5.377 8 C 0.403 3.597 9 O -0.488 6.488 10 N -0.323 5.323 11 C 0.112 3.888 12 C -0.220 4.220 13 C -0.069 4.069 14 C -0.236 4.236 15 C 0.084 3.916 16 O -0.133 6.133 17 C -0.490 4.490 18 H 0.120 0.880 19 C -0.220 4.220 20 N -0.559 5.559 21 Si 0.837 3.163 22 H -0.179 1.179 23 H -0.198 1.198 24 H -0.182 1.182 25 C -0.283 4.283 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.248 0.752 35 H 0.256 0.744 36 H 0.146 0.854 37 H 0.171 0.829 38 H 0.137 0.863 39 H 0.082 0.918 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.197 -1.992 -18.202 25.815 hybrid contribution -0.899 -0.244 1.306 1.604 sum -19.096 -2.236 -16.896 25.595 Atomic orbital electron populations 1.22899 0.79480 1.03692 1.00882 1.87858 1.21264 1.27733 1.95621 1.22827 0.90936 0.85452 1.02634 1.21042 0.93094 0.97616 0.82745 0.89180 1.22027 1.00511 1.00904 0.97710 1.45067 1.12623 1.53474 1.26488 1.16046 0.83042 0.80015 0.80616 1.90914 1.55190 1.42296 1.60371 1.42467 1.10410 1.55507 1.23948 1.17185 0.83440 0.96855 0.91350 1.20847 0.91833 1.10214 0.99136 1.20906 0.96612 0.95512 0.93857 1.20466 0.97931 1.12740 0.92465 1.19582 0.93621 0.93455 0.84924 1.83988 1.37491 1.79951 1.11820 1.21773 0.91753 1.48155 0.87272 0.87971 1.26597 1.01100 0.95937 0.98385 1.70186 1.24397 1.45990 1.15326 0.84655 0.75943 0.79791 0.75863 1.17898 1.19844 1.18205 1.20790 0.96719 1.16004 0.94813 0.93387 0.92947 0.88856 0.91835 0.89577 0.91664 0.90017 0.94324 0.75171 0.74414 0.85369 0.82884 0.86251 0.91849 0.85323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.46 16 2 O -0.41 -5.41 9.55 -148.98 -1.42 -6.83 16 3 C 0.06 0.70 5.68 71.98 0.41 1.11 16 4 C 0.16 2.82 2.98 44.99 0.13 2.96 16 5 H 0.09 1.84 7.57 -2.39 -0.02 1.83 16 6 C -0.15 -2.70 9.29 71.98 0.67 -2.04 16 7 N -0.72 -14.79 5.06 -457.80 -2.32 -17.11 16 8 C 0.70 20.71 8.26 179.05 1.48 22.19 16 9 O -0.61 -22.57 13.73 -3.99 -0.05 -22.62 16 10 N -0.68 -20.14 5.35 -317.23 -1.70 -21.84 16 11 C 0.21 7.96 6.27 38.13 0.24 8.20 16 12 C -0.20 -7.59 8.65 22.42 0.19 -7.40 16 13 C -0.05 -1.88 10.03 22.24 0.22 -1.66 16 14 C -0.22 -9.57 9.99 22.41 0.22 -9.35 16 15 C 0.14 6.87 6.64 22.56 0.15 7.02 16 16 O -0.23 -13.63 9.76 -22.81 -0.22 -13.85 16 17 C -0.41 -23.84 9.44 67.92 0.64 -23.20 16 18 H 0.10 5.33 5.30 -2.91 -0.02 5.31 16 19 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 20 N -0.92 -56.48 13.67 21.61 0.30 -56.19 16 21 Si 1.02 42.15 29.55 68.60 2.03 44.17 16 22 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 24 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 25 C -0.26 -11.59 9.04 22.51 0.20 -11.39 16 26 H 0.05 0.33 8.14 -2.39 -0.02 0.32 16 27 H 0.05 0.31 8.14 -2.39 -0.02 0.30 16 28 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 1.16 7.56 -2.39 -0.02 1.14 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.41 6.58 8.40 -92.72 -0.78 5.80 16 35 H 0.42 9.63 8.83 -92.71 -0.82 8.81 16 36 H 0.13 4.75 6.45 -2.91 -0.02 4.73 16 37 H 0.15 4.50 8.06 -2.91 -0.02 4.48 16 38 H 0.12 5.12 8.06 -2.91 -0.02 5.10 16 39 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 40 H 0.13 5.59 5.72 -2.91 -0.02 5.57 16 Total: -1.00 -76.33 342.02 2.37 -73.96 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: -0.52 Total: 33.22 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 6.28 Total: -12.91 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -3.72 Total: -95.13 kcal Atomic # 8 Polarization: -41.60 SS G_CDS: -1.70 Total: -43.31 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -76.33 2.37 -73.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057828657.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.830 kcal (2) G-P(sol) polarization free energy of solvation -76.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds