Wall clock time and date at job start Tue Mar 31 2020 07:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00177 * 2 1 4 4 C 1.52994 * 109.47524 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47396 * 185.00344 * 4 3 2 6 6 C 1.53002 * 109.47253 * 305.00189 * 4 3 2 7 7 N 1.46504 * 109.46891 * 65.00193 * 4 3 2 8 8 C 1.34779 * 119.99867 * 155.00215 * 7 4 3 9 9 O 1.21586 * 119.99972 * 359.97438 * 8 7 4 10 10 N 1.34776 * 120.00057 * 179.97438 * 8 7 4 11 11 C 1.39938 * 120.00243 * 174.52606 * 10 8 7 12 12 C 1.38969 * 120.03307 * 325.03635 * 11 10 8 13 13 C 1.38151 * 120.06543 * 180.27553 * 12 11 10 14 14 C 1.38166 * 120.14493 * 0.02562 * 13 12 11 15 15 C 1.38912 * 120.06630 * 359.97438 * 14 13 12 16 16 O 1.35746 * 120.03729 * 179.97438 * 15 14 13 17 17 C 1.34825 * 117.00459 * 185.67138 * 16 15 14 18 18 H 1.08004 * 120.00201 * 5.38091 * 17 16 15 19 19 C 1.38653 * 120.00158 * 185.38429 * 17 16 15 20 20 N 1.31556 * 119.99959 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99991 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47202 * 59.99484 * 21 19 17 23 23 H 1.48500 * 109.47079 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47230 * 299.99601 * 21 19 17 25 25 C 1.38704 * 120.04006 * 145.31920 * 11 10 8 26 26 H 1.09000 * 109.47240 * 59.99567 * 1 2 3 27 27 H 1.09000 * 109.46748 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46826 * 299.99659 * 1 2 3 29 29 H 1.09003 * 109.46889 * 60.00168 * 3 2 1 30 30 H 1.09005 * 109.47134 * 300.00355 * 3 2 1 31 31 H 1.09002 * 109.47221 * 180.02562 * 6 4 3 32 32 H 1.08996 * 109.46791 * 299.99726 * 6 4 3 33 33 H 1.08997 * 109.46929 * 60.00145 * 6 4 3 34 34 H 0.96989 * 120.00018 * 334.99893 * 7 4 3 35 35 H 0.97007 * 119.99713 * 354.52350 * 10 8 7 36 36 H 1.07995 * 119.96307 * 0.28238 * 12 11 10 37 37 H 1.08002 * 119.92696 * 180.02562 * 13 12 11 38 38 H 1.07994 * 119.97113 * 179.97438 * 14 13 12 39 39 H 0.97003 * 119.99657 * 180.02562 * 20 19 17 40 40 H 1.08006 * 120.06627 * 359.69559 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1766 0.0890 6 6 3.9790 0.3194 1.1806 7 7 3.9756 0.5645 -1.2528 8 6 5.2194 0.7947 -1.7180 9 8 5.9760 1.5174 -1.0987 10 7 5.6246 0.2238 -2.8696 11 6 6.8721 0.5517 -3.4122 12 6 7.3673 1.8441 -3.2865 13 6 8.5962 2.1700 -3.8269 14 6 9.3366 1.2132 -4.4941 15 6 8.8472 -0.0804 -4.6231 16 8 9.5749 -1.0200 -5.2792 17 6 8.9932 -2.2210 -5.4712 18 1 7.9624 -2.3734 -5.1869 19 6 9.7181 -3.2606 -6.0335 20 7 10.9735 -3.0748 -6.3802 21 14 8.9123 -4.9248 -6.2989 22 1 7.7448 -4.7709 -7.2037 23 1 9.8926 -5.8575 -6.9106 24 1 8.4586 -5.4688 -4.9937 25 6 7.6132 -0.4112 -4.0811 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 5.0657 0.2337 1.1804 32 1 3.6515 0.7809 2.1122 33 1 3.5360 -0.6724 1.0910 34 1 3.3719 -0.0117 -1.7470 35 1 5.0514 -0.4146 -3.3224 36 1 6.7908 2.5943 -2.7658 37 1 8.9791 3.1750 -3.7275 38 1 10.2968 1.4712 -4.9157 39 1 11.4806 -3.8020 -6.7740 40 1 7.2307 -1.4165 -4.1799 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057828662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:44 Heat of formation + Delta-G solvation = -72.048855 kcal Electronic energy + Delta-G solvation = -22995.975946 eV Core-core repulsion = 19391.125229 eV Total energy + Delta-G solvation = -3604.850717 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.40117 -38.94158 -38.31872 -36.59569 -35.17690 -34.14924 -32.21746 -31.18727 -29.12531 -28.24276 -27.68212 -26.02789 -25.26387 -22.84613 -21.74910 -20.99374 -20.37003 -18.65518 -17.84083 -17.37551 -16.94241 -16.40530 -15.81542 -15.32108 -15.22331 -14.98219 -14.68936 -14.26640 -14.08207 -13.90973 -13.54058 -13.43574 -12.93734 -12.87473 -12.49355 -12.33869 -12.13802 -11.72628 -11.51078 -11.47968 -11.20527 -11.09170 -10.89757 -10.76730 -10.44834 -10.12642 -9.98412 -9.60569 -9.41927 -9.13641 -8.77028 -7.65718 -7.09076 -6.41555 -4.01132 2.11754 2.45023 2.72184 3.13759 3.15051 3.17966 3.30752 3.42653 3.98691 4.26297 4.49725 4.65457 4.73646 4.88586 4.95353 5.02317 5.13504 5.19368 5.28503 5.32829 5.33893 5.57539 5.73512 5.84455 6.05604 6.13907 6.18738 6.30543 6.32360 6.45029 6.61808 6.70275 6.86754 7.05944 7.15278 7.34418 7.38591 7.47765 7.87972 8.02754 8.09958 8.70452 9.03867 9.75095 10.76614 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.016942 B = 0.003366 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.297610 B = 8317.562882 C = 9605.716243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.052 3.948 4 C 0.166 3.834 5 H 0.101 0.899 6 C -0.162 4.162 7 N -0.740 5.740 8 C 0.704 3.296 9 O -0.572 6.572 10 N -0.683 5.683 11 C 0.200 3.800 12 C -0.204 4.204 13 C -0.063 4.063 14 C -0.203 4.203 15 C 0.169 3.831 16 O -0.177 6.177 17 C -0.392 4.392 18 H 0.089 0.911 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.940 3.060 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.271 1.271 25 C -0.257 4.257 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.399 0.601 35 H 0.402 0.598 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.270 0.730 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.083 6.468 10.563 23.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.025 4.025 4 C 0.061 3.939 5 H 0.119 0.881 6 C -0.220 4.220 7 N -0.396 5.396 8 C 0.404 3.596 9 O -0.449 6.449 10 N -0.330 5.330 11 C 0.106 3.894 12 C -0.225 4.225 13 C -0.082 4.082 14 C -0.223 4.223 15 C 0.115 3.885 16 O -0.080 6.080 17 C -0.468 4.468 18 H 0.107 0.893 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.764 3.236 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.196 1.196 25 C -0.279 4.279 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.233 0.767 35 H 0.237 0.763 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.080 0.920 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.904 6.843 10.962 22.899 hybrid contribution -1.314 -1.339 -0.489 1.938 sum -20.217 5.504 10.473 23.425 Atomic orbital electron populations 1.22754 0.80880 1.02908 0.99995 1.87903 1.19751 1.27487 1.95416 1.22899 0.93107 0.85298 1.01233 1.20858 0.91114 0.98307 0.83655 0.88112 1.22112 1.02359 1.00750 0.96783 1.45138 1.13874 1.54293 1.26324 1.15916 0.82089 0.80839 0.80746 1.90942 1.53396 1.41578 1.58936 1.42598 1.19081 1.47065 1.24232 1.17173 0.84077 0.92972 0.95152 1.20531 0.98970 0.94964 1.08054 1.20512 0.93717 0.97941 0.96005 1.20230 1.02311 0.91435 1.08294 1.19069 0.89689 0.89883 0.89890 1.84017 1.39635 1.20692 1.63672 1.21217 0.96940 0.86093 1.42547 0.89339 1.25265 0.95560 0.99095 0.96558 1.70029 1.07926 1.33071 1.38815 0.85810 0.78606 0.80247 0.78908 1.19560 1.20292 1.19583 1.20794 0.97441 0.99366 1.10329 0.94020 0.89527 0.94048 0.91648 0.92486 0.91803 0.92006 0.91600 0.76663 0.76328 0.86405 0.86686 0.86437 0.92007 0.85328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.16 9.55 -35.23 -0.34 -3.49 16 3 C 0.05 0.38 5.68 37.15 0.21 0.59 16 4 C 0.17 1.65 2.98 -67.93 -0.20 1.45 16 5 H 0.10 1.09 7.58 -51.93 -0.39 0.69 16 6 C -0.16 -1.66 9.29 37.16 0.35 -1.32 16 7 N -0.74 -8.40 5.06 -58.67 -0.30 -8.69 16 8 C 0.70 11.00 8.25 -86.92 -0.72 10.28 16 9 O -0.57 -11.02 13.80 5.29 0.07 -10.95 16 10 N -0.68 -10.78 5.34 -14.24 -0.08 -10.85 16 11 C 0.20 3.95 6.24 -83.71 -0.52 3.43 16 12 C -0.20 -4.03 8.66 -39.34 -0.34 -4.37 16 13 C -0.06 -1.22 10.03 -39.64 -0.40 -1.61 16 14 C -0.20 -4.45 9.99 -39.36 -0.39 -4.84 16 15 C 0.17 4.17 6.64 -39.13 -0.26 3.91 16 16 O -0.18 -5.09 9.76 0.07 0.00 -5.09 16 17 C -0.39 -10.97 9.44 30.89 0.29 -10.67 16 18 H 0.09 2.27 5.29 -52.48 -0.28 2.00 16 19 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -25.48 13.67 55.48 0.76 -24.72 16 21 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 25 C -0.26 -5.70 9.05 -39.21 -0.35 -6.06 16 26 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.69 7.56 -51.93 -0.39 0.30 16 34 H 0.40 3.72 8.40 -40.82 -0.34 3.37 16 35 H 0.40 5.05 8.84 -40.82 -0.36 4.69 16 36 H 0.12 2.28 6.53 -52.49 -0.34 1.94 16 37 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.13 2.80 5.71 -52.48 -0.30 2.50 16 LS Contribution 342.14 15.07 5.16 5.16 Total: -1.00 -33.99 342.14 -6.42 -40.41 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -5.35 Total: 9.70 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -1.32 Total: -6.96 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.39 Total: -44.27 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.26 Total: -19.53 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.99 -6.42 -40.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057828662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.637 kcal (2) G-P(sol) polarization free energy of solvation -33.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds