Wall clock time and date at job start Tue Mar 31 2020 07:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00177 * 2 1 4 4 C 1.52994 * 109.47524 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47396 * 185.00344 * 4 3 2 6 6 C 1.53002 * 109.47253 * 305.00189 * 4 3 2 7 7 N 1.46504 * 109.46891 * 65.00193 * 4 3 2 8 8 C 1.34779 * 119.99867 * 155.00215 * 7 4 3 9 9 O 1.21586 * 119.99972 * 359.97438 * 8 7 4 10 10 N 1.34776 * 120.00057 * 179.97438 * 8 7 4 11 11 C 1.39938 * 120.00243 * 174.52606 * 10 8 7 12 12 C 1.38969 * 120.03307 * 325.03635 * 11 10 8 13 13 C 1.38151 * 120.06543 * 180.27553 * 12 11 10 14 14 C 1.38166 * 120.14493 * 0.02562 * 13 12 11 15 15 C 1.38912 * 120.06630 * 359.97438 * 14 13 12 16 16 O 1.35746 * 120.03729 * 179.97438 * 15 14 13 17 17 C 1.34825 * 117.00459 * 185.67138 * 16 15 14 18 18 H 1.08004 * 120.00201 * 5.38091 * 17 16 15 19 19 C 1.38653 * 120.00158 * 185.38429 * 17 16 15 20 20 N 1.31556 * 119.99959 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99991 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47202 * 59.99484 * 21 19 17 23 23 H 1.48500 * 109.47079 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47230 * 299.99601 * 21 19 17 25 25 C 1.38704 * 120.04006 * 145.31920 * 11 10 8 26 26 H 1.09000 * 109.47240 * 59.99567 * 1 2 3 27 27 H 1.09000 * 109.46748 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46826 * 299.99659 * 1 2 3 29 29 H 1.09003 * 109.46889 * 60.00168 * 3 2 1 30 30 H 1.09005 * 109.47134 * 300.00355 * 3 2 1 31 31 H 1.09002 * 109.47221 * 180.02562 * 6 4 3 32 32 H 1.08996 * 109.46791 * 299.99726 * 6 4 3 33 33 H 1.08997 * 109.46929 * 60.00145 * 6 4 3 34 34 H 0.96989 * 120.00018 * 334.99893 * 7 4 3 35 35 H 0.97007 * 119.99713 * 354.52350 * 10 8 7 36 36 H 1.07995 * 119.96307 * 0.28238 * 12 11 10 37 37 H 1.08002 * 119.92696 * 180.02562 * 13 12 11 38 38 H 1.07994 * 119.97113 * 179.97438 * 14 13 12 39 39 H 0.97003 * 119.99657 * 180.02562 * 20 19 17 40 40 H 1.08006 * 120.06627 * 359.69559 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1766 0.0890 6 6 3.9790 0.3194 1.1806 7 7 3.9756 0.5645 -1.2528 8 6 5.2194 0.7947 -1.7180 9 8 5.9760 1.5174 -1.0987 10 7 5.6246 0.2238 -2.8696 11 6 6.8721 0.5517 -3.4122 12 6 7.3673 1.8441 -3.2865 13 6 8.5962 2.1700 -3.8269 14 6 9.3366 1.2132 -4.4941 15 6 8.8472 -0.0804 -4.6231 16 8 9.5749 -1.0200 -5.2792 17 6 8.9932 -2.2210 -5.4712 18 1 7.9624 -2.3734 -5.1869 19 6 9.7181 -3.2606 -6.0335 20 7 10.9735 -3.0748 -6.3802 21 14 8.9123 -4.9248 -6.2989 22 1 7.7448 -4.7709 -7.2037 23 1 9.8926 -5.8575 -6.9106 24 1 8.4586 -5.4688 -4.9937 25 6 7.6132 -0.4112 -4.0811 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 5.0657 0.2337 1.1804 32 1 3.6515 0.7809 2.1122 33 1 3.5360 -0.6724 1.0910 34 1 3.3719 -0.0117 -1.7470 35 1 5.0514 -0.4146 -3.3224 36 1 6.7908 2.5943 -2.7658 37 1 8.9791 3.1750 -3.7275 38 1 10.2968 1.4712 -4.9157 39 1 11.4806 -3.8020 -6.7740 40 1 7.2307 -1.4165 -4.1799 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057828662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:43 Heat of formation + Delta-G solvation = -96.968341 kcal Electronic energy + Delta-G solvation = -22997.056536 eV Core-core repulsion = 19391.125229 eV Total energy + Delta-G solvation = -3605.931307 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.72348 -40.52207 -39.18614 -38.17573 -36.21493 -35.61557 -34.22233 -32.25402 -30.78970 -29.83755 -28.25522 -27.28321 -26.57432 -24.15390 -23.47034 -22.14608 -21.62008 -20.15439 -19.42352 -19.06398 -17.76919 -17.23942 -16.84731 -16.77906 -16.51704 -16.22768 -16.03311 -15.71207 -15.58752 -15.47215 -15.03903 -14.58054 -14.30911 -14.16018 -13.65110 -13.50597 -13.23980 -13.05948 -12.78330 -12.74037 -12.59239 -12.44819 -12.14128 -12.08898 -11.99191 -11.49575 -11.32429 -11.09798 -10.71331 -10.60631 -10.18392 -9.31382 -8.82778 -8.44981 -6.13621 0.47080 0.73044 1.36462 1.47352 1.52804 1.55175 2.06478 2.19343 2.82019 2.86866 3.16964 3.19554 3.51653 3.80640 4.08766 4.13867 4.35245 4.35901 4.47071 4.49500 4.53256 4.61605 4.65287 4.67044 4.75214 4.80001 4.93575 4.96093 5.05344 5.12466 5.33123 5.37168 5.49481 5.51479 5.69585 5.71078 5.97582 6.03324 6.21549 6.23183 6.95736 6.99472 7.46834 7.79436 8.78015 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.016942 B = 0.003366 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.297610 B = 8317.562882 C = 9605.716243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.060 3.940 4 C 0.161 3.839 5 H 0.094 0.906 6 C -0.156 4.156 7 N -0.720 5.720 8 C 0.702 3.298 9 O -0.609 6.609 10 N -0.676 5.676 11 C 0.207 3.793 12 C -0.198 4.198 13 C -0.050 4.050 14 C -0.216 4.216 15 C 0.135 3.865 16 O -0.226 6.226 17 C -0.414 4.414 18 H 0.102 0.898 19 C -0.022 4.022 20 N -0.921 5.921 21 Si 1.018 2.982 22 H -0.254 1.254 23 H -0.273 1.273 24 H -0.259 1.259 25 C -0.262 4.262 26 H 0.049 0.951 27 H 0.091 0.909 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.033 0.967 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.412 0.588 35 H 0.418 0.582 36 H 0.130 0.870 37 H 0.155 0.845 38 H 0.120 0.880 39 H 0.273 0.727 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.282 6.865 11.696 26.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.327 6.327 3 C -0.017 4.017 4 C 0.056 3.944 5 H 0.112 0.888 6 C -0.214 4.214 7 N -0.376 5.376 8 C 0.403 3.597 9 O -0.488 6.488 10 N -0.324 5.324 11 C 0.111 3.889 12 C -0.219 4.219 13 C -0.069 4.069 14 C -0.236 4.236 15 C 0.084 3.916 16 O -0.132 6.132 17 C -0.490 4.490 18 H 0.120 0.880 19 C -0.220 4.220 20 N -0.559 5.559 21 Si 0.837 3.163 22 H -0.179 1.179 23 H -0.198 1.198 24 H -0.183 1.183 25 C -0.284 4.284 26 H 0.068 0.932 27 H 0.110 0.890 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.248 0.752 35 H 0.256 0.744 36 H 0.147 0.853 37 H 0.172 0.828 38 H 0.138 0.862 39 H 0.082 0.918 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -22.202 7.258 12.123 26.317 hybrid contribution -0.475 -1.222 -0.668 1.471 sum -22.676 6.036 11.455 26.113 Atomic orbital electron populations 1.22897 0.79453 1.03636 1.00943 1.87866 1.21305 1.27874 1.95632 1.22830 0.90732 0.85407 1.02773 1.21043 0.93248 0.97588 0.82526 0.88830 1.22048 1.00247 1.01009 0.98098 1.45068 1.12328 1.53661 1.26588 1.16047 0.82957 0.80412 0.80293 1.90917 1.54752 1.43245 1.59904 1.42468 1.17961 1.47486 1.24479 1.17188 0.85152 0.92499 0.94035 1.20840 0.99020 0.95094 1.06920 1.20908 0.92999 0.99033 0.93939 1.20471 1.02966 0.91121 1.09016 1.19593 0.90807 0.90317 0.90920 1.83982 1.41404 1.21704 1.66152 1.21766 0.97869 0.86388 1.42932 0.88023 1.26590 0.96142 1.03392 0.95872 1.70183 1.09989 1.34675 1.41012 0.84660 0.77883 0.74297 0.79451 1.17853 1.19792 1.18313 1.20806 0.96987 0.99909 1.10663 0.93197 0.89022 0.92956 0.89559 0.91475 0.94796 0.89923 0.91820 0.75174 0.74420 0.85261 0.82789 0.86240 0.91842 0.85449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -5.47 9.55 -148.98 -1.42 -6.89 16 3 C 0.06 0.68 5.68 71.98 0.41 1.09 16 4 C 0.16 2.84 2.98 44.99 0.13 2.97 16 5 H 0.09 1.84 7.58 -2.38 -0.02 1.83 16 6 C -0.16 -2.96 9.29 71.98 0.67 -2.29 16 7 N -0.72 -14.79 5.06 -457.81 -2.32 -17.10 16 8 C 0.70 20.73 8.25 179.05 1.48 22.20 16 9 O -0.61 -22.63 13.80 -3.99 -0.06 -22.68 16 10 N -0.68 -20.17 5.34 -317.23 -1.69 -21.86 16 11 C 0.21 7.93 6.24 38.13 0.24 8.17 16 12 C -0.20 -7.45 8.66 22.42 0.19 -7.25 16 13 C -0.05 -1.86 10.03 22.23 0.22 -1.64 16 14 C -0.22 -9.54 9.99 22.41 0.22 -9.32 16 15 C 0.13 6.85 6.64 22.56 0.15 7.00 16 16 O -0.23 -13.66 9.76 -22.65 -0.22 -13.88 16 17 C -0.41 -23.96 9.44 67.92 0.64 -23.32 16 18 H 0.10 5.34 5.29 -2.91 -0.02 5.33 16 19 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16 20 N -0.92 -56.62 13.67 21.61 0.30 -56.33 16 21 Si 1.02 42.46 29.55 68.60 2.03 44.49 16 22 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 25 C -0.26 -11.67 9.05 22.51 0.20 -11.47 16 26 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 0.31 8.14 -2.38 -0.02 0.29 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.23 7.56 -2.39 -0.02 1.22 16 34 H 0.41 6.57 8.40 -92.72 -0.78 5.79 16 35 H 0.42 9.66 8.84 -92.70 -0.82 8.84 16 36 H 0.13 4.67 6.53 -2.91 -0.02 4.65 16 37 H 0.15 4.45 8.06 -2.91 -0.02 4.43 16 38 H 0.12 5.12 8.06 -2.91 -0.02 5.09 16 39 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.13 5.60 5.71 -2.91 -0.02 5.58 16 Total: -1.00 -76.86 342.14 2.37 -74.49 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: -0.52 Total: 32.96 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 6.28 Total: -13.19 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -3.72 Total: -95.29 kcal Atomic # 8 Polarization: -41.76 SS G_CDS: -1.70 Total: -43.46 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -76.86 2.37 -74.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057828662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.474 kcal (2) G-P(sol) polarization free energy of solvation -76.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds