Wall clock time and date at job start Tue Mar 31 2020 07:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47219 * 2 1 4 4 N 1.46492 * 109.47212 * 185.67000 * 3 2 1 5 5 C 1.36931 * 120.00340 * 82.94380 * 4 3 2 6 6 H 1.08004 * 120.00313 * 171.05721 * 5 4 3 7 7 C 1.38817 * 119.99992 * 351.05583 * 5 4 3 8 8 N 1.31622 * 119.99588 * 1.49914 * 7 5 4 9 9 Si 1.86799 * 120.00204 * 181.49517 * 7 5 4 10 10 H 1.48501 * 109.47046 * 60.00239 * 9 7 5 11 11 H 1.48495 * 109.46905 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46967 * 300.00177 * 9 7 5 13 13 C 1.46506 * 119.99777 * 262.94516 * 4 3 2 14 14 C 1.53005 * 109.46951 * 273.52824 * 13 4 3 15 15 O 1.42904 * 109.46732 * 66.16018 * 14 13 4 16 16 C 1.35904 * 116.99414 * 180.02562 * 15 14 13 17 17 C 1.38736 * 120.05245 * 180.02562 * 16 15 14 18 18 C 1.38138 * 119.94425 * 180.02562 * 17 16 15 19 19 C 1.38268 * 120.05396 * 0.02562 * 18 17 16 20 20 N 1.48007 * 119.94153 * 179.97438 * 19 18 17 21 21 O 1.21798 * 120.00080 * 0.02562 * 20 19 18 22 22 O 1.21809 * 119.99862 * 179.72511 * 20 19 18 23 23 C 1.38266 * 120.11478 * 0.25539 * 19 18 17 24 24 C 1.38144 * 120.05341 * 359.45071 * 23 19 18 25 25 H 1.09003 * 109.47010 * 299.99399 * 1 2 3 26 26 H 1.08993 * 109.47360 * 59.99604 * 1 2 3 27 27 H 1.08994 * 109.47068 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47010 * 240.00601 * 2 1 3 29 29 H 1.08996 * 109.47844 * 120.00546 * 2 1 3 30 30 H 1.08998 * 109.46856 * 65.66795 * 3 2 1 31 31 H 1.09003 * 109.47082 * 305.67471 * 3 2 1 32 32 H 0.97004 * 119.99640 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.47314 * 153.53345 * 13 4 3 34 34 H 1.08995 * 109.47249 * 33.52882 * 13 4 3 35 35 H 1.09001 * 109.47246 * 306.16202 * 14 13 4 36 36 H 1.08999 * 109.47247 * 186.16177 * 14 13 4 37 37 H 1.08001 * 120.02343 * 359.97438 * 17 16 15 38 38 H 1.08002 * 119.97324 * 179.97438 * 18 17 16 39 39 H 1.07998 * 119.97051 * 179.72421 * 23 19 18 40 40 H 1.07998 * 120.03183 * 180.25419 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.4986 1.4448 -0.1365 5 6 4.0705 1.3390 -1.3761 6 1 5.1341 1.4850 -1.4944 7 6 3.2833 1.0442 -2.4808 8 7 1.9829 0.8955 -2.3413 9 14 4.0693 0.8586 -4.1652 10 1 5.0635 -0.2438 -4.1287 11 1 3.0205 0.5470 -5.1692 12 1 4.7487 2.1259 -4.5367 13 6 4.3454 1.5602 1.0535 14 6 4.5535 3.0383 1.3900 15 8 3.3076 3.6170 1.7837 16 6 3.3176 4.9343 2.1177 17 6 2.1434 5.5605 2.5100 18 6 2.1559 6.8998 2.8485 19 6 3.3374 7.6162 2.7960 20 7 3.3479 9.0511 3.1586 21 8 2.3165 9.5997 3.5033 22 8 4.3890 9.6820 3.1176 23 6 4.5078 6.9959 2.3998 24 6 4.5017 5.6554 2.0661 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.7619 1.9262 0.9364 31 1 1.5961 1.9849 -0.8348 32 1 1.4328 0.6898 -3.1134 33 1 5.3106 1.0925 0.8593 34 1 3.8621 1.0610 1.8932 35 1 4.9355 3.5603 0.5127 36 1 5.2699 3.1277 2.2065 37 1 1.2201 5.0016 2.5499 38 1 1.2420 7.3878 3.1535 39 1 5.4284 7.5588 2.3554 40 1 5.4170 5.1702 1.7607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058921995.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:27 Heat of formation + Delta-G solvation = 13.295025 kcal Electronic energy + Delta-G solvation = -23455.595926 eV Core-core repulsion = 19854.445997 eV Total energy + Delta-G solvation = -3601.149929 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.13116 -40.31046 -37.82283 -36.53043 -36.16955 -32.46115 -31.63897 -31.52187 -30.93596 -28.49214 -26.05855 -25.50858 -24.21563 -22.89241 -22.15217 -21.01157 -19.75108 -19.35401 -18.62245 -18.30512 -17.49647 -16.82509 -16.03214 -15.93743 -15.12436 -14.95791 -14.05574 -14.01492 -13.74558 -13.52138 -13.39914 -13.19732 -12.67784 -12.44152 -12.00247 -11.66561 -11.53163 -11.34295 -11.17978 -11.15181 -11.13959 -10.95888 -10.79238 -10.69249 -10.32906 -10.07268 -9.92277 -9.72148 -9.60246 -9.40135 -8.71796 -8.35207 -6.92467 -5.68034 -3.21933 -0.08655 0.81954 1.40116 1.46534 3.12619 3.22180 3.31294 3.36834 3.38122 4.26426 4.35684 4.38298 4.59615 4.82664 5.08687 5.12283 5.25074 5.38756 5.45956 5.50188 5.63921 5.73603 5.77256 5.91608 6.01524 6.21790 6.29842 6.30498 6.43341 6.45650 6.65078 6.82006 7.01043 7.26787 7.32544 7.40877 7.54920 7.67886 7.91724 8.14147 8.40588 9.20794 9.78383 10.21065 11.21114 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019322 B = 0.003520 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.793128 B = 7952.792981 C = 8466.706252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 C 0.177 3.823 4 N -0.598 5.598 5 C -0.252 4.252 6 H 0.071 0.929 7 C -0.004 4.004 8 N -0.900 5.900 9 Si 0.908 3.092 10 H -0.286 1.286 11 H -0.290 1.290 12 H -0.287 1.287 13 C 0.151 3.849 14 C 0.027 3.973 15 O -0.277 6.277 16 C 0.202 3.798 17 C -0.158 4.158 18 C -0.015 4.015 19 C -0.102 4.102 20 N 0.041 4.959 21 O -0.175 6.175 22 O -0.178 6.178 23 C -0.010 4.010 24 C -0.216 4.216 25 H 0.026 0.974 26 H 0.056 0.944 27 H 0.027 0.973 28 H 0.092 0.908 29 H 0.004 0.996 30 H 0.005 0.995 31 H 0.099 0.901 32 H 0.250 0.750 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.151 0.849 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.244 6.222 9.679 11.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.154 4.154 3 C 0.053 3.947 4 N -0.319 5.319 5 C -0.381 4.381 6 H 0.089 0.911 7 C -0.200 4.200 8 N -0.547 5.547 9 Si 0.739 3.261 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.213 1.213 13 C 0.021 3.979 14 C -0.051 4.051 15 O -0.187 6.187 16 C 0.152 3.848 17 C -0.177 4.177 18 C -0.034 4.034 19 C -0.186 4.186 20 N 0.556 4.444 21 O -0.388 6.388 22 O -0.390 6.390 23 C -0.030 4.030 24 C -0.235 4.235 25 H 0.046 0.954 26 H 0.075 0.925 27 H 0.046 0.954 28 H 0.111 0.889 29 H 0.022 0.978 30 H 0.023 0.977 31 H 0.117 0.883 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.172 0.828 38 H 0.173 0.827 39 H 0.169 0.831 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.958 5.329 9.316 10.910 hybrid contribution 0.676 0.297 -0.882 1.150 sum 2.635 5.626 8.434 10.475 Atomic orbital electron populations 1.21563 0.98601 0.98771 1.00071 1.22176 0.93012 1.00459 0.99746 1.21078 0.81408 0.94645 0.97610 1.44184 1.02103 1.84574 1.00997 1.19268 0.92783 1.41570 0.84453 0.91096 1.24832 0.95859 1.01175 0.98136 1.70244 1.03069 1.53442 1.27954 0.86277 0.78027 0.77867 0.83955 1.21249 1.21574 1.21326 1.20834 0.96569 0.89340 0.91124 1.24407 0.82660 0.99762 0.98232 1.86349 1.36343 1.18538 1.77498 1.19655 0.93344 0.85093 0.86750 1.20495 0.98327 0.93443 1.05461 1.20780 0.96788 0.92989 0.92831 1.20882 0.97961 0.81344 1.18401 1.43541 1.00101 1.03311 0.97429 1.94510 1.22618 1.71622 1.50086 1.94512 1.21307 1.65174 1.58038 1.20768 0.96954 0.94184 0.91055 1.21345 0.99224 0.94126 1.08803 0.95446 0.92523 0.95413 0.88931 0.97752 0.97662 0.88344 0.93900 0.90772 0.93288 0.91298 0.92916 0.82760 0.82687 0.83112 0.83137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 9.91 37.16 0.37 -2.19 16 2 C -0.11 -2.54 5.34 -26.73 -0.14 -2.68 16 3 C 0.18 4.02 4.75 -4.04 -0.02 4.00 16 4 N -0.60 -13.43 2.53 -173.23 -0.44 -13.86 16 5 C -0.25 -6.22 9.76 -15.06 -0.15 -6.37 16 6 H 0.07 1.69 7.83 -52.48 -0.41 1.28 16 7 C 0.00 -0.10 5.20 -17.43 -0.09 -0.19 16 8 N -0.90 -23.37 7.27 55.49 0.40 -22.97 16 9 Si 0.91 20.56 29.55 -169.99 -5.02 15.53 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.15 2.64 6.07 -4.04 -0.02 2.61 16 14 C 0.03 0.40 5.08 37.16 0.19 0.59 16 15 O -0.28 -4.33 8.81 -19.44 -0.17 -4.50 16 16 C 0.20 2.68 6.69 -39.21 -0.26 2.42 16 17 C -0.16 -1.88 9.99 -39.43 -0.39 -2.27 16 18 C -0.01 -0.17 9.55 -39.61 -0.38 -0.55 16 19 C -0.10 -1.29 6.85 -79.93 -0.55 -1.84 16 20 N 0.04 0.59 4.45 33.97 0.15 0.74 16 21 O -0.17 -2.59 18.44 -29.46 -0.54 -3.13 16 22 O -0.18 -2.64 18.44 -29.46 -0.54 -3.18 16 23 C -0.01 -0.12 9.55 -39.61 -0.38 -0.50 16 24 C -0.22 -2.50 9.04 -39.43 -0.36 -2.86 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.09 2.36 6.03 -51.93 -0.31 2.04 16 29 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.01 0.11 6.97 -51.93 -0.36 -0.25 16 31 H 0.10 2.55 5.91 -51.93 -0.31 2.24 16 32 H 0.25 6.46 8.31 -40.82 -0.34 6.12 16 33 H 0.07 1.21 8.01 -51.93 -0.42 0.80 16 34 H 0.05 0.83 8.10 -51.93 -0.42 0.41 16 35 H 0.07 1.07 7.66 -51.93 -0.40 0.67 16 36 H 0.05 0.60 7.67 -51.93 -0.40 0.20 16 37 H 0.15 1.64 8.06 -52.49 -0.42 1.21 16 38 H 0.16 1.48 7.61 -52.49 -0.40 1.08 16 39 H 0.15 1.47 7.60 -52.49 -0.40 1.07 16 40 H 0.15 1.50 6.30 -52.49 -0.33 1.17 16 LS Contribution 337.20 15.07 5.08 5.08 Total: -1.00 -27.34 337.20 -8.67 -36.01 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -5.40 Total: 0.10 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -2.18 Total: -9.82 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.12 Total: -36.09 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -1.26 Total: -10.82 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.34 -8.67 -36.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058921995.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.310 kcal (2) G-P(sol) polarization free energy of solvation -27.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds