Wall clock time and date at job start Tue Mar 31 2020 07:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47219 * 2 1 4 4 N 1.46492 * 109.47212 * 185.67000 * 3 2 1 5 5 C 1.36931 * 120.00340 * 82.94380 * 4 3 2 6 6 H 1.08004 * 120.00313 * 171.05721 * 5 4 3 7 7 C 1.38817 * 119.99992 * 351.05583 * 5 4 3 8 8 N 1.31622 * 119.99588 * 1.49914 * 7 5 4 9 9 Si 1.86799 * 120.00204 * 181.49517 * 7 5 4 10 10 H 1.48501 * 109.47046 * 60.00239 * 9 7 5 11 11 H 1.48495 * 109.46905 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46967 * 300.00177 * 9 7 5 13 13 C 1.46506 * 119.99777 * 262.94516 * 4 3 2 14 14 C 1.53005 * 109.46951 * 273.52824 * 13 4 3 15 15 O 1.42904 * 109.46732 * 66.16018 * 14 13 4 16 16 C 1.35904 * 116.99414 * 180.02562 * 15 14 13 17 17 C 1.38736 * 120.05245 * 180.02562 * 16 15 14 18 18 C 1.38138 * 119.94425 * 180.02562 * 17 16 15 19 19 C 1.38268 * 120.05396 * 0.02562 * 18 17 16 20 20 N 1.48007 * 119.94153 * 179.97438 * 19 18 17 21 21 O 1.21798 * 120.00080 * 0.02562 * 20 19 18 22 22 O 1.21809 * 119.99862 * 179.72511 * 20 19 18 23 23 C 1.38266 * 120.11478 * 0.25539 * 19 18 17 24 24 C 1.38144 * 120.05341 * 359.45071 * 23 19 18 25 25 H 1.09003 * 109.47010 * 299.99399 * 1 2 3 26 26 H 1.08993 * 109.47360 * 59.99604 * 1 2 3 27 27 H 1.08994 * 109.47068 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47010 * 240.00601 * 2 1 3 29 29 H 1.08996 * 109.47844 * 120.00546 * 2 1 3 30 30 H 1.08998 * 109.46856 * 65.66795 * 3 2 1 31 31 H 1.09003 * 109.47082 * 305.67471 * 3 2 1 32 32 H 0.97004 * 119.99640 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.47314 * 153.53345 * 13 4 3 34 34 H 1.08995 * 109.47249 * 33.52882 * 13 4 3 35 35 H 1.09001 * 109.47246 * 306.16202 * 14 13 4 36 36 H 1.08999 * 109.47247 * 186.16177 * 14 13 4 37 37 H 1.08001 * 120.02343 * 359.97438 * 17 16 15 38 38 H 1.08002 * 119.97324 * 179.97438 * 18 17 16 39 39 H 1.07998 * 119.97051 * 179.72421 * 23 19 18 40 40 H 1.07998 * 120.03183 * 180.25419 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.4986 1.4448 -0.1365 5 6 4.0705 1.3390 -1.3761 6 1 5.1341 1.4850 -1.4944 7 6 3.2833 1.0442 -2.4808 8 7 1.9829 0.8955 -2.3413 9 14 4.0693 0.8586 -4.1652 10 1 5.0635 -0.2438 -4.1287 11 1 3.0205 0.5470 -5.1692 12 1 4.7487 2.1259 -4.5367 13 6 4.3454 1.5602 1.0535 14 6 4.5535 3.0383 1.3900 15 8 3.3076 3.6170 1.7837 16 6 3.3176 4.9343 2.1177 17 6 2.1434 5.5605 2.5100 18 6 2.1559 6.8998 2.8485 19 6 3.3374 7.6162 2.7960 20 7 3.3479 9.0511 3.1586 21 8 2.3165 9.5997 3.5033 22 8 4.3890 9.6820 3.1176 23 6 4.5078 6.9959 2.3998 24 6 4.5017 5.6554 2.0661 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.7619 1.9262 0.9364 31 1 1.5961 1.9849 -0.8348 32 1 1.4328 0.6898 -3.1134 33 1 5.3106 1.0925 0.8593 34 1 3.8621 1.0610 1.8932 35 1 4.9355 3.5603 0.5127 36 1 5.2699 3.1277 2.2065 37 1 1.2201 5.0016 2.5499 38 1 1.2420 7.3878 3.1535 39 1 5.4284 7.5588 2.3554 40 1 5.4170 5.1702 1.7607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058921995.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:26 Heat of formation + Delta-G solvation = 1.305962 kcal Electronic energy + Delta-G solvation = -23456.115811 eV Core-core repulsion = 19854.445997 eV Total energy + Delta-G solvation = -3601.669814 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.20575 -41.34012 -38.95464 -37.78374 -37.63894 -33.94843 -33.35957 -32.53430 -32.05587 -29.93052 -27.31856 -27.11833 -25.50173 -24.07967 -23.31094 -22.42455 -21.46163 -20.36024 -19.71933 -19.42180 -18.57788 -18.53768 -17.36494 -17.04069 -16.54797 -16.00172 -15.54721 -15.29190 -14.94573 -14.89440 -14.74678 -14.49154 -13.91849 -13.81220 -13.44742 -13.05287 -12.82693 -12.76264 -12.68925 -12.55563 -12.28993 -12.28008 -12.26558 -12.04390 -11.99029 -11.73688 -11.65909 -11.45167 -11.19841 -10.49594 -10.20213 -9.74096 -8.70221 -7.57265 -5.09690 -1.14805 -0.07303 0.35561 0.43609 1.50716 1.52301 1.57192 2.07488 2.27625 2.55970 3.35570 3.42369 3.48676 3.64688 3.69874 3.90318 4.21362 4.23212 4.39672 4.44194 4.48745 4.64058 4.65013 4.73893 4.75088 4.85958 4.96063 5.01210 5.08528 5.12175 5.14327 5.31362 5.38896 5.61008 5.66524 5.68624 6.04877 6.22832 6.31364 6.53829 6.54504 7.32392 8.01259 8.39401 9.29546 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019322 B = 0.003520 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.793128 B = 7952.792981 C = 8466.706252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.108 4.108 3 C 0.188 3.812 4 N -0.615 5.615 5 C -0.253 4.253 6 H 0.077 0.923 7 C -0.054 4.054 8 N -0.915 5.915 9 Si 0.960 3.040 10 H -0.284 1.284 11 H -0.301 1.301 12 H -0.285 1.285 13 C 0.144 3.856 14 C 0.036 3.964 15 O -0.300 6.300 16 C 0.186 3.814 17 C -0.159 4.159 18 C -0.009 4.009 19 C -0.112 4.112 20 N 0.041 4.959 21 O -0.188 6.188 22 O -0.190 6.190 23 C -0.007 4.007 24 C -0.210 4.210 25 H 0.046 0.954 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.009 0.991 30 H 0.016 0.984 31 H 0.064 0.936 32 H 0.239 0.761 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.093 0.907 37 H 0.165 0.835 38 H 0.172 0.828 39 H 0.168 0.832 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.092 6.461 10.781 12.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.147 4.147 3 C 0.063 3.937 4 N -0.337 5.337 5 C -0.383 4.383 6 H 0.095 0.905 7 C -0.248 4.248 8 N -0.563 5.563 9 Si 0.791 3.209 10 H -0.210 1.210 11 H -0.228 1.228 12 H -0.212 1.212 13 C 0.017 3.983 14 C -0.041 4.041 15 O -0.211 6.211 16 C 0.137 3.863 17 C -0.178 4.178 18 C -0.028 4.028 19 C -0.196 4.196 20 N 0.553 4.447 21 O -0.400 6.400 22 O -0.401 6.401 23 C -0.026 4.026 24 C -0.229 4.229 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.027 0.973 30 H 0.034 0.966 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.111 0.889 37 H 0.182 0.818 38 H 0.190 0.810 39 H 0.186 0.814 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.835 5.599 10.455 12.195 hybrid contribution 0.440 0.235 -1.144 1.248 sum 3.275 5.835 9.312 11.466 Atomic orbital electron populations 1.21452 0.96663 0.99774 1.00210 1.22023 0.94785 0.99776 0.98127 1.20793 0.81939 0.94462 0.96485 1.44342 1.02416 1.85108 1.01834 1.19567 0.93075 1.40109 0.85523 0.90476 1.25421 0.96430 1.02308 1.00639 1.70452 1.03664 1.54629 1.27601 0.85453 0.76886 0.77605 0.80994 1.21025 1.22774 1.21205 1.21050 0.96339 0.91487 0.89413 1.24097 0.83203 0.97281 0.99476 1.86281 1.36819 1.19841 1.78198 1.19859 0.94454 0.84426 0.87550 1.20649 0.98534 0.93564 1.05082 1.20956 0.97135 0.92698 0.92052 1.21104 0.99015 0.80407 1.19113 1.43770 0.99845 1.03937 0.97133 1.94501 1.22692 1.72169 1.50609 1.94500 1.21386 1.65759 1.58462 1.20978 0.97268 0.94187 0.90213 1.21505 0.99362 0.93976 1.08041 0.93470 0.94117 0.93981 0.92371 0.97257 0.96574 0.91764 0.95061 0.89647 0.92703 0.92229 0.88879 0.81758 0.81036 0.81415 0.81340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.68 9.91 71.98 0.71 -3.96 16 2 C -0.11 -4.75 5.34 30.60 0.16 -4.59 16 3 C 0.19 8.52 4.75 86.38 0.41 8.93 16 4 N -0.62 -27.19 2.53 -701.99 -1.78 -28.97 16 5 C -0.25 -12.40 9.76 84.04 0.82 -11.58 16 6 H 0.08 3.59 7.83 -2.91 -0.02 3.57 16 7 C -0.05 -2.76 5.20 84.86 0.44 -2.32 16 8 N -0.91 -48.57 7.27 21.65 0.16 -48.41 16 9 Si 0.96 42.64 29.55 68.60 2.03 44.67 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 12 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 13 C 0.14 4.77 6.07 86.38 0.52 5.29 16 14 C 0.04 0.97 5.08 71.98 0.37 1.34 16 15 O -0.30 -8.76 8.81 -92.47 -0.81 -9.58 16 16 C 0.19 4.55 6.69 22.51 0.15 4.70 16 17 C -0.16 -3.48 9.99 22.37 0.22 -3.25 16 18 C -0.01 -0.20 9.55 22.25 0.21 0.02 16 19 C -0.11 -2.63 6.85 36.39 0.25 -2.38 16 20 N 0.04 1.14 4.45 -46.44 -0.21 0.93 16 21 O -0.19 -5.38 18.44 18.89 0.35 -5.03 16 22 O -0.19 -5.43 18.44 18.87 0.35 -5.08 16 23 C -0.01 -0.15 9.55 22.25 0.21 0.06 16 24 C -0.21 -4.30 9.04 22.37 0.20 -4.10 16 25 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 3.00 6.03 -2.39 -0.01 2.99 16 29 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.02 0.68 6.97 -2.39 -0.02 0.67 16 31 H 0.06 3.38 5.91 -2.39 -0.01 3.37 16 32 H 0.24 12.75 8.31 -92.71 -0.77 11.98 16 33 H 0.09 2.60 8.01 -2.39 -0.02 2.58 16 34 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 35 H 0.06 1.71 7.66 -2.39 -0.02 1.69 16 36 H 0.09 1.75 7.67 -2.39 -0.02 1.73 16 37 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 38 H 0.17 2.94 7.61 -2.91 -0.02 2.91 16 39 H 0.17 2.82 7.60 -2.91 -0.02 2.80 16 40 H 0.17 2.79 6.30 -2.91 -0.02 2.77 16 Total: -1.00 -58.71 337.20 5.81 -52.90 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 1.04 Total: 10.43 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 4.69 Total: -11.86 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -1.83 Total: -76.45 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.12 Total: -19.69 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -58.71 5.81 -52.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058921995.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.206 kcal (2) G-P(sol) polarization free energy of solvation -58.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds