Wall clock time and date at job start Tue Mar 31 2020 07:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35903 * 117.00005 * 2 1 4 4 C 1.38753 * 120.05529 * 0.25137 * 3 2 1 5 5 C 1.38124 * 119.93769 * 180.25172 * 4 3 2 6 6 C 1.38279 * 120.05895 * 359.50164 * 5 4 3 7 7 C 1.50705 * 119.94577 * 180.22822 * 6 5 4 8 8 N 1.46903 * 109.46956 * 89.99323 * 7 6 5 9 9 C 1.46901 * 110.99818 * 66.05365 * 8 7 6 10 10 C 1.46899 * 111.00146 * 190.00065 * 8 7 6 11 11 H 1.09003 * 109.46756 * 55.00068 * 10 8 7 12 12 C 1.53004 * 109.47213 * 295.00490 * 10 8 7 13 13 C 1.50702 * 109.47442 * 175.00394 * 10 8 7 14 14 H 1.08002 * 119.99922 * 114.93354 * 13 10 8 15 15 C 1.37871 * 119.99910 * 294.93317 * 13 10 8 16 16 N 1.31513 * 120.00022 * 179.97438 * 15 13 10 17 17 Si 1.86804 * 119.99883 * 359.97438 * 15 13 10 18 18 H 1.48503 * 109.47191 * 84.87352 * 17 15 13 19 19 H 1.48510 * 109.47086 * 204.87264 * 17 15 13 20 20 H 1.48500 * 109.47488 * 324.87250 * 17 15 13 21 21 C 1.38247 * 120.11385 * 0.24695 * 6 5 4 22 22 C 1.38166 * 120.05168 * 0.02562 * 21 6 5 23 23 N 1.48004 * 120.02662 * 179.97438 * 22 21 6 24 24 O 1.21801 * 119.99738 * 359.97438 * 23 22 21 25 25 O 1.21797 * 120.00153 * 180.02562 * 23 22 21 26 26 H 1.09006 * 109.46873 * 299.99593 * 1 2 3 27 27 H 1.08992 * 109.46977 * 59.99474 * 1 2 3 28 28 H 1.08994 * 109.46982 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.03050 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.96572 * 179.77123 * 5 4 3 31 31 H 1.08997 * 109.47337 * 209.99691 * 7 6 5 32 32 H 1.09003 * 109.46898 * 330.00256 * 7 6 5 33 33 H 1.08992 * 109.47356 * 59.99298 * 9 8 7 34 34 H 1.09000 * 109.47586 * 180.02562 * 9 8 7 35 35 H 1.09005 * 109.46845 * 299.99336 * 9 8 7 36 36 H 1.08999 * 109.47141 * 295.12854 * 12 10 8 37 37 H 1.08999 * 109.47083 * 55.12273 * 12 10 8 38 38 H 1.09005 * 109.47226 * 175.12123 * 12 10 8 39 39 H 0.97003 * 119.99564 * 179.97438 * 16 15 13 40 40 H 1.07994 * 119.97257 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0053 5 6 1.9210 3.6047 0.0000 6 6 3.3020 3.6757 -0.0001 7 6 3.9862 5.0185 -0.0007 8 7 4.2085 5.4553 1.3842 9 6 5.1666 4.5753 2.0665 10 6 4.6541 6.8543 1.4298 11 1 3.9362 7.4817 0.9015 12 6 6.0253 6.9749 0.7618 13 6 4.7533 7.3035 2.8649 14 1 5.7141 7.5632 3.2843 15 6 3.6175 7.3829 3.6424 16 7 3.7041 7.7744 4.8950 17 14 1.9556 6.9345 2.9167 18 1 1.7519 5.4669 3.0159 19 1 0.8825 7.6350 3.6672 20 1 1.9112 7.3452 1.4903 21 6 4.0561 2.5170 -0.0001 22 6 3.4311 1.2848 -0.0005 23 7 4.2390 0.0446 -0.0011 24 8 5.4553 0.1102 -0.0016 25 8 3.6876 -1.0414 -0.0019 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 0.2129 2.3204 0.0098 30 1 1.3341 4.5113 0.0004 31 1 4.9441 4.9379 -0.5145 32 1 3.3582 5.7461 -0.5147 33 1 6.1189 4.5948 1.5367 34 1 5.3126 4.9209 3.0898 35 1 4.7788 3.5566 2.0793 36 1 6.7616 6.4167 1.3401 37 1 5.9740 6.5696 -0.2488 38 1 6.3172 8.0243 0.7180 39 1 2.9049 7.8306 5.4418 40 1 5.1345 2.5751 -0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061591096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:29 Heat of formation + Delta-G solvation = -2.972446 kcal Electronic energy + Delta-G solvation = -24303.947246 eV Core-core repulsion = 20702.091906 eV Total energy + Delta-G solvation = -3601.855340 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.07466 -40.44052 -38.63878 -36.95399 -36.29063 -32.84783 -32.17527 -31.37296 -29.28578 -28.07173 -26.88351 -26.06946 -25.59001 -23.58645 -22.64631 -21.37432 -19.44662 -18.93987 -18.53690 -17.91594 -17.42772 -16.85360 -16.52434 -16.10603 -15.38464 -14.98403 -14.82536 -14.41150 -14.15519 -13.60292 -13.38686 -13.01200 -12.81538 -12.62249 -12.33760 -11.91510 -11.70900 -11.62947 -11.37678 -11.28770 -11.17331 -11.10056 -10.94188 -10.84651 -10.74150 -10.48963 -10.05769 -9.73580 -9.69215 -9.23178 -8.67360 -8.58825 -7.42284 -6.11243 -4.17852 -0.03627 0.87917 1.44146 1.52874 2.68988 3.17860 3.38600 3.44221 3.51733 4.18891 4.33396 4.49803 4.58935 4.75376 4.78383 4.83345 4.86358 4.87034 5.14622 5.21825 5.40683 5.49020 5.61263 5.75352 5.81485 6.01828 6.14037 6.15136 6.18297 6.24540 6.27765 6.42136 6.43700 6.69691 6.79888 6.91732 7.10850 7.53431 7.84181 7.86290 8.06240 8.48196 8.89881 9.52678 10.98857 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.018466 B = 0.005003 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.969671 B = 5595.429465 C = 6382.753122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.286 6.286 3 C 0.185 3.815 4 C -0.213 4.213 5 C -0.010 4.010 6 C -0.095 4.095 7 C 0.083 3.917 8 N -0.533 5.533 9 C 0.033 3.967 10 C 0.170 3.830 11 H 0.046 0.954 12 C -0.165 4.165 13 C -0.512 4.512 14 H 0.073 0.927 15 C 0.083 3.917 16 N -0.897 5.897 17 Si 0.915 3.085 18 H -0.272 1.272 19 H -0.312 1.312 20 H -0.273 1.273 21 C -0.016 4.016 22 C -0.081 4.081 23 N 0.040 4.960 24 O -0.183 6.183 25 O -0.147 6.147 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.109 0.891 29 H 0.149 0.851 30 H 0.144 0.856 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.018 0.982 34 H 0.087 0.913 35 H 0.040 0.960 36 H 0.050 0.950 37 H 0.030 0.970 38 H 0.051 0.949 39 H 0.264 0.736 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.006 -11.179 -12.393 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.197 6.197 3 C 0.136 3.864 4 C -0.232 4.232 5 C -0.028 4.028 6 C -0.097 4.097 7 C -0.045 4.045 8 N -0.258 5.258 9 C -0.114 4.114 10 C 0.066 3.934 11 H 0.063 0.937 12 C -0.224 4.224 13 C -0.550 4.550 14 H 0.091 0.909 15 C -0.122 4.122 16 N -0.534 5.534 17 Si 0.746 3.254 18 H -0.198 1.198 19 H -0.240 1.240 20 H -0.199 1.199 21 C -0.035 4.035 22 C -0.166 4.166 23 N 0.557 4.443 24 O -0.392 6.392 25 O -0.366 6.366 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.127 0.873 29 H 0.167 0.833 30 H 0.162 0.838 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.036 0.964 34 H 0.105 0.895 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.805 -10.758 -11.975 17.890 hybrid contribution -0.221 -0.379 -0.545 0.699 sum -8.025 -11.137 -12.520 18.579 Atomic orbital electron populations 1.23265 0.77464 1.04916 1.01819 1.86386 1.22070 1.24606 1.86592 1.18603 0.89369 0.86290 0.92132 1.21284 1.00819 0.90985 1.10142 1.21345 0.94359 0.97703 0.89431 1.19959 0.93375 0.95290 1.01078 1.21116 0.98518 0.91045 0.93805 1.62829 1.47324 1.05207 1.10438 1.22210 0.92664 0.95109 1.01467 1.19915 0.91404 0.84185 0.97935 0.93656 1.22295 1.00700 1.01247 0.98152 1.20869 0.95695 1.44599 0.93828 0.90942 1.25028 0.99836 0.92909 0.94381 1.69948 1.29788 1.46368 1.07301 0.86208 0.81941 0.78818 0.78464 1.19782 1.24018 1.19879 1.20867 1.02029 0.88452 0.92168 1.20444 0.88027 0.85576 1.22512 1.43322 1.01122 1.02413 0.97443 1.94527 0.95731 1.93968 1.54959 1.94550 1.74355 1.15021 1.52701 0.91971 0.92097 0.87305 0.83319 0.83831 0.93673 0.90045 0.96380 0.89478 0.94138 0.93091 0.95138 0.92949 0.92670 0.82624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.29 -3.54 8.51 -41.56 -0.35 -3.89 16 3 C 0.19 2.45 6.67 -39.22 -0.26 2.19 16 4 C -0.21 -2.40 9.04 -39.43 -0.36 -2.76 16 5 C -0.01 -0.12 9.69 -39.61 -0.38 -0.51 16 6 C -0.10 -1.35 4.88 -104.60 -0.51 -1.86 16 7 C 0.08 1.27 4.56 -4.97 -0.02 1.25 16 8 N -0.53 -10.35 2.78 -237.72 -0.66 -11.01 16 9 C 0.03 0.64 8.39 60.07 0.50 1.14 16 10 C 0.17 3.64 1.70 -68.86 -0.12 3.53 16 11 H 0.05 1.00 6.80 -51.93 -0.35 0.64 16 12 C -0.17 -3.05 8.40 37.16 0.31 -2.74 16 13 C -0.51 -13.45 7.76 -34.44 -0.27 -13.71 16 14 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 15 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 16 N -0.90 -26.57 13.96 55.43 0.77 -25.79 16 17 Si 0.92 21.77 26.26 -169.99 -4.46 17.30 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.31 -7.59 7.11 56.52 0.40 -7.18 16 20 H -0.27 -6.10 6.52 56.52 0.37 -5.73 16 21 C -0.02 -0.22 7.47 -39.60 -0.30 -0.52 16 22 C -0.08 -1.21 6.87 -79.81 -0.55 -1.76 16 23 N 0.04 0.67 4.45 34.03 0.15 0.82 16 24 O -0.18 -3.13 18.45 -29.46 -0.54 -3.68 16 25 O -0.15 -2.52 17.24 -36.49 -0.63 -3.15 16 26 H 0.06 0.40 7.65 -51.93 -0.40 0.00 16 27 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 28 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.15 1.19 6.30 -52.49 -0.33 0.86 16 30 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.05 0.64 6.77 -51.93 -0.35 0.29 16 32 H 0.08 1.18 7.94 -51.93 -0.41 0.76 16 33 H 0.02 0.31 6.62 -51.93 -0.34 -0.03 16 34 H 0.09 1.92 6.99 -51.93 -0.36 1.56 16 35 H 0.04 0.72 6.17 -51.93 -0.32 0.40 16 36 H 0.05 0.96 6.75 -51.93 -0.35 0.61 16 37 H 0.03 0.48 6.52 -51.93 -0.34 0.14 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.16 2.13 7.58 -52.49 -0.40 1.73 16 LS Contribution 327.50 15.07 4.94 4.94 Total: -1.00 -31.21 327.50 -7.06 -38.27 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -5.21 Total: -1.39 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -1.05 Total: -12.43 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.26 Total: -35.98 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -1.53 Total: -10.71 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.46 Total: 17.30 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.21 -7.06 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061591096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.299 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds