Wall clock time and date at job start Tue Mar 31 2020 07:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35903 * 117.00005 * 2 1 4 4 C 1.38753 * 120.05529 * 0.25137 * 3 2 1 5 5 C 1.38124 * 119.93769 * 180.25172 * 4 3 2 6 6 C 1.38279 * 120.05895 * 359.50164 * 5 4 3 7 7 C 1.50705 * 119.94577 * 180.22822 * 6 5 4 8 8 N 1.46903 * 109.46956 * 89.99323 * 7 6 5 9 9 C 1.46901 * 110.99818 * 66.05365 * 8 7 6 10 10 C 1.46899 * 111.00146 * 190.00065 * 8 7 6 11 11 H 1.09003 * 109.46756 * 55.00068 * 10 8 7 12 12 C 1.53004 * 109.47213 * 295.00490 * 10 8 7 13 13 C 1.50702 * 109.47442 * 175.00394 * 10 8 7 14 14 H 1.08002 * 119.99922 * 114.93354 * 13 10 8 15 15 C 1.37871 * 119.99910 * 294.93317 * 13 10 8 16 16 N 1.31513 * 120.00022 * 179.97438 * 15 13 10 17 17 Si 1.86804 * 119.99883 * 359.97438 * 15 13 10 18 18 H 1.48503 * 109.47191 * 84.87352 * 17 15 13 19 19 H 1.48510 * 109.47086 * 204.87264 * 17 15 13 20 20 H 1.48500 * 109.47488 * 324.87250 * 17 15 13 21 21 C 1.38247 * 120.11385 * 0.24695 * 6 5 4 22 22 C 1.38166 * 120.05168 * 0.02562 * 21 6 5 23 23 N 1.48004 * 120.02662 * 179.97438 * 22 21 6 24 24 O 1.21801 * 119.99738 * 359.97438 * 23 22 21 25 25 O 1.21797 * 120.00153 * 180.02562 * 23 22 21 26 26 H 1.09006 * 109.46873 * 299.99593 * 1 2 3 27 27 H 1.08992 * 109.46977 * 59.99474 * 1 2 3 28 28 H 1.08994 * 109.46982 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.03050 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.96572 * 179.77123 * 5 4 3 31 31 H 1.08997 * 109.47337 * 209.99691 * 7 6 5 32 32 H 1.09003 * 109.46898 * 330.00256 * 7 6 5 33 33 H 1.08992 * 109.47356 * 59.99298 * 9 8 7 34 34 H 1.09000 * 109.47586 * 180.02562 * 9 8 7 35 35 H 1.09005 * 109.46845 * 299.99336 * 9 8 7 36 36 H 1.08999 * 109.47141 * 295.12854 * 12 10 8 37 37 H 1.08999 * 109.47083 * 55.12273 * 12 10 8 38 38 H 1.09005 * 109.47226 * 175.12123 * 12 10 8 39 39 H 0.97003 * 119.99564 * 179.97438 * 16 15 13 40 40 H 1.07994 * 119.97257 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0053 5 6 1.9210 3.6047 0.0000 6 6 3.3020 3.6757 -0.0001 7 6 3.9862 5.0185 -0.0007 8 7 4.2085 5.4553 1.3842 9 6 5.1666 4.5753 2.0665 10 6 4.6541 6.8543 1.4298 11 1 3.9362 7.4817 0.9015 12 6 6.0253 6.9749 0.7618 13 6 4.7533 7.3035 2.8649 14 1 5.7141 7.5632 3.2843 15 6 3.6175 7.3829 3.6424 16 7 3.7041 7.7744 4.8950 17 14 1.9556 6.9345 2.9167 18 1 1.7519 5.4669 3.0159 19 1 0.8825 7.6350 3.6672 20 1 1.9112 7.3452 1.4903 21 6 4.0561 2.5170 -0.0001 22 6 3.4311 1.2848 -0.0005 23 7 4.2390 0.0446 -0.0011 24 8 5.4553 0.1102 -0.0016 25 8 3.6876 -1.0414 -0.0019 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 0.2129 2.3204 0.0098 30 1 1.3341 4.5113 0.0004 31 1 4.9441 4.9379 -0.5145 32 1 3.3582 5.7461 -0.5147 33 1 6.1189 4.5948 1.5367 34 1 5.3126 4.9209 3.0898 35 1 4.7788 3.5566 2.0793 36 1 6.7616 6.4167 1.3401 37 1 5.9740 6.5696 -0.2488 38 1 6.3172 8.0243 0.7180 39 1 2.9049 7.8306 5.4418 40 1 5.1345 2.5751 -0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061591096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:29 Heat of formation + Delta-G solvation = -21.495108 kcal Electronic energy + Delta-G solvation = -24304.750448 eV Core-core repulsion = 20702.091906 eV Total energy + Delta-G solvation = -3602.658542 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.25407 -41.42887 -39.77183 -38.27833 -37.53250 -34.61705 -33.34335 -32.68864 -30.70235 -28.90302 -28.08801 -27.49134 -27.11207 -25.01004 -23.64942 -22.55561 -21.01231 -20.07033 -19.75064 -18.96444 -18.72058 -18.62984 -17.49342 -16.95489 -16.78016 -16.42502 -15.81620 -15.72555 -15.40979 -14.95533 -14.78903 -14.52311 -14.05522 -13.89228 -13.36950 -13.15899 -12.96743 -12.77391 -12.67764 -12.64632 -12.58541 -12.37585 -12.25561 -12.16939 -12.07288 -11.99070 -11.80100 -11.58484 -11.08613 -10.71436 -10.67781 -9.64713 -8.91306 -8.20464 -6.31082 -1.17507 -0.08918 0.29909 0.40506 1.47776 1.58296 1.65815 1.89416 2.17316 2.53911 3.05331 3.25546 3.45828 3.59388 3.69513 3.80323 3.88486 4.23575 4.30241 4.33500 4.45036 4.46841 4.50984 4.58797 4.66685 4.68702 4.75081 4.78689 4.83206 4.87311 5.12268 5.14262 5.25850 5.32408 5.34666 5.48080 5.67549 5.95377 6.09201 6.44495 6.56300 6.58743 6.84123 7.43453 8.93178 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.018466 B = 0.005003 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.969671 B = 5595.429465 C = 6382.753122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.306 6.306 3 C 0.188 3.812 4 C -0.201 4.201 5 C -0.006 4.006 6 C -0.107 4.107 7 C 0.085 3.915 8 N -0.545 5.545 9 C 0.044 3.956 10 C 0.175 3.825 11 H 0.052 0.948 12 C -0.158 4.158 13 C -0.510 4.510 14 H 0.026 0.974 15 C 0.022 3.978 16 N -0.954 5.954 17 Si 0.978 3.022 18 H -0.266 1.266 19 H -0.323 1.323 20 H -0.241 1.241 21 C -0.018 4.018 22 C -0.104 4.104 23 N 0.042 4.958 24 O -0.207 6.207 25 O -0.162 6.162 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.125 0.875 29 H 0.188 0.812 30 H 0.165 0.835 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.031 0.969 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.039 0.961 37 H 0.064 0.936 38 H 0.049 0.951 39 H 0.262 0.738 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.636 -11.812 -15.054 21.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.217 6.217 3 C 0.138 3.862 4 C -0.219 4.219 5 C -0.025 4.025 6 C -0.108 4.108 7 C -0.042 4.042 8 N -0.271 5.271 9 C -0.104 4.104 10 C 0.069 3.931 11 H 0.069 0.931 12 C -0.217 4.217 13 C -0.548 4.548 14 H 0.044 0.956 15 C -0.176 4.176 16 N -0.594 5.594 17 Si 0.805 3.195 18 H -0.191 1.191 19 H -0.252 1.252 20 H -0.165 1.165 21 C -0.038 4.038 22 C -0.189 4.189 23 N 0.553 4.447 24 O -0.412 6.412 25 O -0.379 6.379 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.143 0.857 29 H 0.205 0.795 30 H 0.182 0.818 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.399 -11.423 -14.674 21.306 hybrid contribution 0.581 -0.229 0.265 0.679 sum -9.817 -11.652 -14.409 20.971 Atomic orbital electron populations 1.23670 0.74742 1.06753 1.03472 1.86382 1.24912 1.24472 1.85984 1.18834 0.88880 0.87451 0.91016 1.21657 1.02503 0.89522 1.08259 1.21674 0.93816 0.99048 0.87952 1.19855 0.94164 0.94268 1.02561 1.21169 0.99874 0.92125 0.91048 1.62458 1.47079 1.03971 1.13542 1.22046 0.93628 0.95432 0.99332 1.19710 0.93236 0.85450 0.94668 0.93063 1.22193 0.98693 1.01292 0.99552 1.21132 0.93600 1.43677 0.96407 0.95552 1.25939 1.04077 0.93078 0.94505 1.70115 1.30636 1.49337 1.09267 0.85204 0.76593 0.78553 0.79124 1.19076 1.25233 1.16459 1.20859 1.02109 0.88466 0.92356 1.20656 0.88849 0.84709 1.24734 1.43609 1.01138 1.03009 0.96919 1.94508 0.96497 1.94211 1.56015 1.94522 1.74263 1.15964 1.53188 0.90699 0.89866 0.85670 0.79519 0.81785 0.92308 0.88193 0.95012 0.93562 0.92941 0.94175 0.91701 0.93190 0.92985 0.82844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.19 16 2 O -0.31 -6.74 8.51 -71.30 -0.61 -7.35 16 3 C 0.19 4.41 6.67 22.51 0.15 4.56 16 4 C -0.20 -3.57 9.04 22.37 0.20 -3.36 16 5 C -0.01 -0.13 9.69 22.25 0.22 0.09 16 6 C -0.11 -2.63 4.88 -19.85 -0.10 -2.73 16 7 C 0.08 2.26 4.56 85.56 0.39 2.65 16 8 N -0.55 -19.80 2.78 -906.01 -2.52 -22.32 16 9 C 0.04 1.63 8.39 127.69 1.07 2.70 16 10 C 0.17 7.19 1.70 44.17 0.08 7.26 16 11 H 0.05 2.08 6.80 -2.39 -0.02 2.06 16 12 C -0.16 -5.57 8.40 71.98 0.60 -4.96 16 13 C -0.51 -27.32 7.76 25.60 0.20 -27.12 16 14 H 0.03 1.60 7.99 -2.91 -0.02 1.58 16 15 C 0.02 1.24 5.47 84.65 0.46 1.70 16 16 N -0.95 -58.62 13.96 21.44 0.30 -58.32 16 17 Si 0.98 43.82 26.26 68.60 1.80 45.63 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 19 H -0.32 -14.96 7.11 99.48 0.71 -14.26 16 20 H -0.24 -9.43 6.52 99.48 0.65 -8.78 16 21 C -0.02 -0.48 7.47 22.25 0.17 -0.32 16 22 C -0.10 -2.95 6.87 36.47 0.25 -2.70 16 23 N 0.04 1.38 4.45 -46.24 -0.21 1.17 16 24 O -0.21 -7.17 18.45 18.88 0.35 -6.82 16 25 O -0.16 -5.49 17.24 25.61 0.44 -5.05 16 26 H 0.07 0.62 7.65 -2.38 -0.02 0.60 16 27 H 0.08 0.52 7.67 -2.39 -0.02 0.51 16 28 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.19 1.82 6.30 -2.91 -0.02 1.80 16 30 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 31 H 0.06 1.43 6.77 -2.39 -0.02 1.41 16 32 H 0.10 2.34 7.94 -2.39 -0.02 2.32 16 33 H 0.03 1.07 6.62 -2.39 -0.02 1.06 16 34 H 0.05 2.08 6.99 -2.39 -0.02 2.06 16 35 H 0.05 1.81 6.17 -2.38 -0.01 1.79 16 36 H 0.04 1.47 6.75 -2.39 -0.02 1.46 16 37 H 0.06 1.83 6.52 -2.39 -0.02 1.81 16 38 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.15 4.01 7.58 -2.91 -0.02 3.99 16 Total: -1.00 -71.09 327.50 5.36 -65.73 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 1.00 Total: 8.37 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 4.80 Total: -21.04 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -2.43 Total: -79.47 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.18 Total: -19.22 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.80 Total: 45.63 kcal Total: -71.09 5.36 -65.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061591096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.237 kcal (2) G-P(sol) polarization free energy of solvation -71.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds