Wall clock time and date at job start Tue Mar 31 2020 07:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35899 * 116.99939 * 2 1 4 4 C 1.38753 * 120.05836 * 0.02562 * 3 2 1 5 5 C 1.38118 * 119.94254 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05769 * 359.97438 * 5 4 3 7 7 N 1.48003 * 119.94256 * 180.02562 * 6 5 4 8 8 O 1.21799 * 120.00337 * 359.97438 * 7 6 5 9 9 O 1.21807 * 119.99755 * 179.97438 * 7 6 5 10 10 C 1.38245 * 120.10956 * 359.78951 * 6 5 4 11 11 C 1.38162 * 120.05522 * 0.46351 * 10 6 5 12 12 C 1.50699 * 120.02684 * 179.79258 * 11 10 6 13 13 N 1.46906 * 109.47140 * 259.72169 * 12 11 10 14 14 C 1.46900 * 110.99728 * 66.04805 * 13 12 11 15 15 C 1.46905 * 111.00051 * 189.99841 * 13 12 11 16 16 H 1.09002 * 109.46483 * 55.00005 * 15 13 12 17 17 C 1.52995 * 109.47200 * 295.00351 * 15 13 12 18 18 C 1.50697 * 109.46827 * 175.00101 * 15 13 12 19 19 H 1.08000 * 120.00189 * 0.02562 * 18 15 13 20 20 C 1.37882 * 119.99554 * 180.02562 * 18 15 13 21 21 N 1.31516 * 120.00095 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 119.99601 * 179.97438 * 20 18 15 23 23 H 1.48498 * 109.47413 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47023 * 120.00059 * 22 20 18 25 25 H 1.48495 * 109.47178 * 239.99631 * 22 20 18 26 26 H 1.09001 * 109.46826 * 300.00084 * 1 2 3 27 27 H 1.08997 * 109.47103 * 59.99220 * 1 2 3 28 28 H 1.08999 * 109.47094 * 180.02562 * 1 2 3 29 29 H 1.07992 * 120.02616 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.97208 * 180.02562 * 5 4 3 31 31 H 1.08004 * 119.96913 * 180.22814 * 10 6 5 32 32 H 1.09004 * 109.47103 * 139.72270 * 12 11 10 33 33 H 1.09000 * 109.47247 * 19.72147 * 12 11 10 34 34 H 1.08996 * 109.47030 * 59.99921 * 14 13 12 35 35 H 1.08999 * 109.46702 * 180.02562 * 14 13 12 36 36 H 1.08996 * 109.46890 * 299.99929 * 14 13 12 37 37 H 1.09001 * 109.47209 * 180.02562 * 17 15 13 38 38 H 1.09002 * 109.46927 * 300.00025 * 17 15 13 39 39 H 1.08999 * 109.47343 * 59.99642 * 17 15 13 40 40 H 0.96999 * 119.99537 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3021 3.6757 0.0016 7 7 3.9740 4.9944 0.0028 8 8 3.3107 6.0159 0.0027 9 8 5.1904 5.0581 0.0037 10 6 4.0561 2.5170 0.0060 11 6 3.4312 1.2847 0.0002 12 6 4.2537 0.0221 0.0003 13 7 4.3196 -0.5196 -1.3637 14 6 5.0639 0.3823 -2.2528 15 6 4.9072 -1.8660 -1.3677 16 1 4.3483 -2.5083 -0.6871 17 6 6.3657 -1.7872 -0.9124 18 6 4.8460 -2.4365 -2.7612 19 1 4.4142 -1.8568 -3.5636 20 6 5.3413 -3.6987 -3.0116 21 7 5.8667 -4.4048 -2.0343 22 14 5.2648 -4.4062 -4.7387 23 1 4.6312 -3.4198 -5.6502 24 1 6.6401 -4.7052 -5.2126 25 1 4.4629 -5.6560 -4.7266 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 0.2130 2.3204 0.0014 30 1 1.3342 4.5113 0.0019 31 1 5.1345 2.5751 0.0101 32 1 3.7924 -0.7121 0.6609 33 1 5.2612 0.2447 0.3518 34 1 6.0793 0.5068 -1.8768 35 1 5.0970 -0.0424 -3.2561 36 1 4.5671 1.3519 -2.2854 37 1 6.8019 -2.7861 -0.9159 38 1 6.9246 -1.1448 -1.5930 39 1 6.4100 -1.3744 0.0954 40 1 6.2155 -5.2926 -2.2107 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095691.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:35 Heat of formation + Delta-G solvation = -3.919464 kcal Electronic energy + Delta-G solvation = -24025.278688 eV Core-core repulsion = 20423.382283 eV Total energy + Delta-G solvation = -3601.896405 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.11057 -40.57623 -37.95881 -37.05583 -36.48178 -33.30201 -31.77900 -31.23785 -28.62051 -27.89094 -26.98070 -25.85051 -25.20834 -23.91473 -22.43076 -21.58910 -19.50857 -18.67293 -18.55440 -18.27125 -17.45730 -16.52546 -16.20593 -16.02688 -15.28488 -14.94187 -14.50196 -14.21239 -13.87640 -13.61980 -13.43939 -13.04171 -12.79694 -12.46450 -12.18983 -11.64472 -11.52579 -11.50192 -11.28686 -11.17718 -11.13008 -11.09155 -11.05695 -10.83486 -10.68802 -10.49606 -10.07252 -9.90619 -9.43105 -8.94499 -8.67551 -8.43277 -7.24626 -6.05386 -4.08946 -0.06466 0.82405 1.41760 1.49074 2.97966 3.19469 3.26744 3.35044 3.39249 4.21314 4.31072 4.38333 4.55409 4.72558 4.89501 4.95960 5.03320 5.14456 5.27274 5.31316 5.39963 5.46080 5.62096 5.69954 5.88601 6.07584 6.14422 6.22177 6.34497 6.44800 6.61540 6.77093 6.84076 7.02885 7.06560 7.40736 7.66137 7.71927 7.77458 8.04609 8.31342 8.51836 8.96684 9.56113 11.01770 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.004204 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.316101 B = 6659.122938 C = 7460.424199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.278 6.278 3 C 0.206 3.794 4 C -0.216 4.216 5 C -0.019 4.019 6 C -0.089 4.089 7 N 0.040 4.960 8 O -0.177 6.177 9 O -0.170 6.170 10 C -0.015 4.015 11 C -0.094 4.094 12 C 0.097 3.903 13 N -0.524 5.524 14 C 0.031 3.969 15 C 0.213 3.787 16 H 0.041 0.959 17 C -0.174 4.174 18 C -0.499 4.499 19 H 0.063 0.937 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.895 3.105 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.284 1.284 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.108 0.892 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.155 0.845 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.019 0.981 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.089 0.911 38 H 0.031 0.969 39 H 0.008 0.992 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.026 11.344 6.094 16.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.188 6.188 3 C 0.157 3.843 4 C -0.236 4.236 5 C -0.039 4.039 6 C -0.173 4.173 7 N 0.556 4.444 8 O -0.390 6.390 9 O -0.384 6.384 10 C -0.035 4.035 11 C -0.096 4.096 12 C -0.031 4.031 13 N -0.248 5.248 14 C -0.117 4.117 15 C 0.107 3.893 16 H 0.059 0.941 17 C -0.233 4.233 18 C -0.537 4.537 19 H 0.081 0.919 20 C -0.142 4.142 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.211 1.211 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.126 0.874 29 H 0.167 0.833 30 H 0.169 0.831 31 H 0.173 0.827 32 H 0.104 0.896 33 H 0.060 0.940 34 H 0.038 0.962 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.107 0.893 38 H 0.050 0.950 39 H 0.027 0.973 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.680 10.274 5.936 15.964 hybrid contribution 0.765 0.136 -0.635 1.004 sum -9.915 10.410 5.301 15.322 Atomic orbital electron populations 1.23242 0.77935 1.04977 1.01290 1.86356 1.21532 1.25207 1.85672 1.19206 0.91925 0.84805 0.88375 1.21212 1.01023 0.90787 1.10566 1.20682 0.91381 0.99322 0.92475 1.20864 0.93151 0.82585 1.20737 1.43532 1.01015 1.02911 0.96963 1.94494 1.65513 1.24653 1.54354 1.94540 0.95956 1.93987 1.53941 1.20782 1.01568 0.88804 0.92321 1.19405 0.91127 0.95510 1.03597 1.20893 0.96294 0.91609 0.94280 1.62414 1.53481 1.04242 1.04643 1.22281 0.95023 0.95200 0.99246 1.19327 0.89424 0.82933 0.97629 0.94084 1.22428 1.01689 1.03478 0.95738 1.21126 1.38443 1.00191 0.93958 0.91930 1.24914 0.95340 0.96891 0.97074 1.69891 1.40771 1.11450 1.31192 0.86480 0.77587 0.78995 0.84570 1.19800 1.21156 1.21066 0.92494 0.92126 0.87392 0.83332 0.83127 0.82747 0.89580 0.94017 0.96215 0.90445 0.94445 0.89251 0.95004 0.97341 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.28 -3.70 9.73 -19.42 -0.19 -3.89 16 3 C 0.21 2.68 6.66 -39.22 -0.26 2.42 16 4 C -0.22 -2.21 9.04 -39.43 -0.36 -2.57 16 5 C -0.02 -0.21 9.55 -39.61 -0.38 -0.59 16 6 C -0.09 -1.19 6.85 -79.93 -0.55 -1.74 16 7 N 0.04 0.60 4.45 33.97 0.15 0.75 16 8 O -0.18 -2.66 18.44 -29.46 -0.54 -3.21 16 9 O -0.17 -2.71 18.44 -29.46 -0.54 -3.26 16 10 C -0.01 -0.21 8.26 -39.61 -0.33 -0.53 16 11 C -0.09 -1.37 4.58 -104.48 -0.48 -1.84 16 12 C 0.10 1.65 4.20 -4.97 -0.02 1.63 16 13 N -0.52 -10.66 4.73 -237.73 -1.13 -11.79 16 14 C 0.03 0.59 8.51 60.06 0.51 1.11 16 15 C 0.21 5.11 2.34 -68.87 -0.16 4.95 16 16 H 0.04 1.09 8.03 -51.93 -0.42 0.67 16 17 C -0.17 -4.05 8.28 37.15 0.31 -3.74 16 18 C -0.50 -13.19 7.89 -34.44 -0.27 -13.46 16 19 H 0.06 1.67 6.77 -52.49 -0.36 1.32 16 20 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 21 N -0.89 -24.78 11.32 55.43 0.63 -24.15 16 22 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H 0.06 0.34 7.66 -51.93 -0.40 -0.05 16 27 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 28 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.15 1.04 6.30 -52.49 -0.33 0.71 16 30 H 0.15 1.34 7.61 -52.49 -0.40 0.94 16 31 H 0.15 2.06 7.58 -52.48 -0.40 1.66 16 32 H 0.09 1.49 7.71 -51.93 -0.40 1.09 16 33 H 0.04 0.69 6.80 -51.93 -0.35 0.34 16 34 H 0.02 0.37 6.51 -51.93 -0.34 0.03 16 35 H 0.08 1.61 6.41 -51.93 -0.33 1.28 16 36 H 0.04 0.64 6.66 -51.93 -0.35 0.30 16 37 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 38 H 0.03 0.72 6.47 -51.93 -0.34 0.38 16 39 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 40 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 330.69 15.07 4.98 4.98 Total: -1.00 -29.58 330.69 -7.77 -37.36 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.03 Total: -0.96 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -1.09 Total: -11.72 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: -0.35 Total: -35.18 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -1.28 Total: -10.35 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.58 -7.77 -37.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095691.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.436 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds