Wall clock time and date at job start Tue Mar 31 2020 07:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35899 * 116.99939 * 2 1 4 4 C 1.38753 * 120.05836 * 0.02562 * 3 2 1 5 5 C 1.38118 * 119.94254 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05769 * 359.97438 * 5 4 3 7 7 N 1.48003 * 119.94256 * 180.02562 * 6 5 4 8 8 O 1.21799 * 120.00337 * 359.97438 * 7 6 5 9 9 O 1.21807 * 119.99755 * 179.97438 * 7 6 5 10 10 C 1.38245 * 120.10956 * 359.78951 * 6 5 4 11 11 C 1.38162 * 120.05522 * 0.46351 * 10 6 5 12 12 C 1.50699 * 120.02684 * 179.79258 * 11 10 6 13 13 N 1.46906 * 109.47140 * 259.72169 * 12 11 10 14 14 C 1.46900 * 110.99728 * 66.04805 * 13 12 11 15 15 C 1.46905 * 111.00051 * 189.99841 * 13 12 11 16 16 H 1.09002 * 109.46483 * 55.00005 * 15 13 12 17 17 C 1.52995 * 109.47200 * 295.00351 * 15 13 12 18 18 C 1.50697 * 109.46827 * 175.00101 * 15 13 12 19 19 H 1.08000 * 120.00189 * 0.02562 * 18 15 13 20 20 C 1.37882 * 119.99554 * 180.02562 * 18 15 13 21 21 N 1.31516 * 120.00095 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 119.99601 * 179.97438 * 20 18 15 23 23 H 1.48498 * 109.47413 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47023 * 120.00059 * 22 20 18 25 25 H 1.48495 * 109.47178 * 239.99631 * 22 20 18 26 26 H 1.09001 * 109.46826 * 300.00084 * 1 2 3 27 27 H 1.08997 * 109.47103 * 59.99220 * 1 2 3 28 28 H 1.08999 * 109.47094 * 180.02562 * 1 2 3 29 29 H 1.07992 * 120.02616 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.97208 * 180.02562 * 5 4 3 31 31 H 1.08004 * 119.96913 * 180.22814 * 10 6 5 32 32 H 1.09004 * 109.47103 * 139.72270 * 12 11 10 33 33 H 1.09000 * 109.47247 * 19.72147 * 12 11 10 34 34 H 1.08996 * 109.47030 * 59.99921 * 14 13 12 35 35 H 1.08999 * 109.46702 * 180.02562 * 14 13 12 36 36 H 1.08996 * 109.46890 * 299.99929 * 14 13 12 37 37 H 1.09001 * 109.47209 * 180.02562 * 17 15 13 38 38 H 1.09002 * 109.46927 * 300.00025 * 17 15 13 39 39 H 1.08999 * 109.47343 * 59.99642 * 17 15 13 40 40 H 0.96999 * 119.99537 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3021 3.6757 0.0016 7 7 3.9740 4.9944 0.0028 8 8 3.3107 6.0159 0.0027 9 8 5.1904 5.0581 0.0037 10 6 4.0561 2.5170 0.0060 11 6 3.4312 1.2847 0.0002 12 6 4.2537 0.0221 0.0003 13 7 4.3196 -0.5196 -1.3637 14 6 5.0639 0.3823 -2.2528 15 6 4.9072 -1.8660 -1.3677 16 1 4.3483 -2.5083 -0.6871 17 6 6.3657 -1.7872 -0.9124 18 6 4.8460 -2.4365 -2.7612 19 1 4.4142 -1.8568 -3.5636 20 6 5.3413 -3.6987 -3.0116 21 7 5.8667 -4.4048 -2.0343 22 14 5.2648 -4.4062 -4.7387 23 1 4.6312 -3.4198 -5.6502 24 1 6.6401 -4.7052 -5.2126 25 1 4.4629 -5.6560 -4.7266 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 0.2130 2.3204 0.0014 30 1 1.3342 4.5113 0.0019 31 1 5.1345 2.5751 0.0101 32 1 3.7924 -0.7121 0.6609 33 1 5.2612 0.2447 0.3518 34 1 6.0793 0.5068 -1.8768 35 1 5.0970 -0.0424 -3.2561 36 1 4.5671 1.3519 -2.2854 37 1 6.8019 -2.7861 -0.9159 38 1 6.9246 -1.1448 -1.5930 39 1 6.4100 -1.3744 0.0954 40 1 6.2155 -5.2926 -2.2107 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095691.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:34 Heat of formation + Delta-G solvation = -21.579543 kcal Electronic energy + Delta-G solvation = -24026.044487 eV Core-core repulsion = 20423.382283 eV Total energy + Delta-G solvation = -3602.662204 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.21438 -41.56666 -39.16349 -38.42083 -37.62680 -35.02826 -33.21237 -32.20199 -30.37338 -28.68811 -28.40732 -27.20031 -26.83667 -25.44248 -23.40280 -22.80743 -21.18484 -19.78891 -19.70906 -19.17555 -18.57147 -18.20890 -17.48358 -17.18539 -16.72937 -16.07062 -15.98913 -15.45533 -15.30775 -14.90134 -14.42199 -14.33922 -14.16214 -13.92369 -13.42056 -13.10286 -12.91190 -12.85984 -12.67548 -12.65330 -12.53797 -12.34540 -12.27116 -12.26831 -12.18494 -12.10882 -12.00207 -11.66247 -10.91611 -10.49251 -10.38426 -9.69433 -8.88751 -8.10280 -6.20394 -1.14465 -0.12304 0.35465 0.43397 1.41143 1.43824 1.54586 2.13511 2.22441 2.43885 3.19489 3.23356 3.41943 3.49637 3.64211 3.82147 4.07281 4.21225 4.33066 4.42450 4.46047 4.55399 4.57341 4.66772 4.71035 4.72008 4.78695 4.87024 4.89078 4.91979 5.12299 5.15045 5.17734 5.38025 5.54068 5.71212 5.78179 6.17518 6.19723 6.45221 6.55294 6.69624 6.92432 7.48555 8.96018 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.004204 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.316101 B = 6659.122938 C = 7460.424199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.308 6.308 3 C 0.205 3.795 4 C -0.198 4.198 5 C -0.005 4.005 6 C -0.103 4.103 7 N 0.042 4.958 8 O -0.166 6.166 9 O -0.211 6.211 10 C -0.014 4.014 11 C -0.115 4.115 12 C 0.104 3.896 13 N -0.531 5.531 14 C 0.040 3.960 15 C 0.219 3.781 16 H 0.010 0.990 17 C -0.161 4.161 18 C -0.511 4.511 19 H 0.056 0.944 20 C 0.013 3.987 21 N -0.920 5.920 22 Si 0.956 3.044 23 H -0.269 1.269 24 H -0.283 1.283 25 H -0.281 1.281 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.190 0.810 30 H 0.179 0.821 31 H 0.150 0.850 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.019 0.981 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.031 0.969 39 H 0.027 0.973 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.276 12.598 5.839 18.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.219 6.219 3 C 0.155 3.845 4 C -0.217 4.217 5 C -0.024 4.024 6 C -0.187 4.187 7 N 0.554 4.446 8 O -0.384 6.384 9 O -0.416 6.416 10 C -0.034 4.034 11 C -0.117 4.117 12 C -0.024 4.024 13 N -0.254 5.254 14 C -0.109 4.109 15 C 0.112 3.888 16 H 0.028 0.972 17 C -0.220 4.220 18 C -0.550 4.550 19 H 0.074 0.926 20 C -0.185 4.185 21 N -0.560 5.560 22 Si 0.782 3.218 23 H -0.194 1.194 24 H -0.209 1.209 25 H -0.207 1.207 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.130 0.870 29 H 0.207 0.793 30 H 0.196 0.804 31 H 0.167 0.833 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.869 11.526 5.687 18.188 hybrid contribution 1.297 -0.239 -0.499 1.410 sum -11.572 11.287 5.188 16.977 Atomic orbital electron populations 1.23588 0.75388 1.06155 1.03376 1.86324 1.24329 1.25787 1.85444 1.19359 0.91548 0.85837 0.87739 1.21559 1.02706 0.89084 1.08375 1.21072 0.90303 1.00736 0.90304 1.20975 0.94073 0.81397 1.22248 1.43748 1.00894 1.03440 0.96539 1.94462 1.65278 1.25275 1.53353 1.94549 0.96625 1.94290 1.56114 1.20674 1.01520 0.88900 0.92303 1.19113 0.91934 0.94261 1.06420 1.20771 0.96865 0.92710 0.92067 1.62269 1.53129 1.03066 1.06910 1.22183 0.95222 0.95588 0.97872 1.19046 0.89402 0.84596 0.95768 0.97182 1.22233 1.01065 1.01851 0.96864 1.21374 1.38243 1.00485 0.94869 0.92630 1.25635 0.95107 0.97293 1.00480 1.70013 1.41404 1.11679 1.32880 0.85535 0.77542 0.78237 0.80462 1.19366 1.20890 1.20686 0.89659 0.90593 0.86964 0.79307 0.80357 0.83263 0.90509 0.94045 0.96212 0.92378 0.92403 0.91977 0.95011 0.95431 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.31 -7.67 9.73 -92.41 -0.90 -8.57 16 3 C 0.20 4.85 6.66 22.51 0.15 5.00 16 4 C -0.20 -3.22 9.04 22.36 0.20 -3.02 16 5 C 0.00 -0.09 9.55 22.25 0.21 0.12 16 6 C -0.10 -2.53 6.85 36.39 0.25 -2.29 16 7 N 0.04 1.19 4.45 -46.44 -0.21 0.99 16 8 O -0.17 -4.63 18.44 18.89 0.35 -4.28 16 9 O -0.21 -6.73 18.44 18.88 0.35 -6.39 16 10 C -0.01 -0.37 8.26 22.25 0.18 -0.19 16 11 C -0.12 -3.23 4.58 -19.77 -0.09 -3.32 16 12 C 0.10 3.55 4.20 85.56 0.36 3.90 16 13 N -0.53 -21.77 4.73 -906.03 -4.29 -26.06 16 14 C 0.04 1.52 8.51 127.69 1.09 2.61 16 15 C 0.22 10.78 2.34 44.17 0.10 10.88 16 16 H 0.01 0.56 8.03 -2.39 -0.02 0.54 16 17 C -0.16 -7.63 8.28 71.98 0.60 -7.04 16 18 C -0.51 -27.49 7.89 25.60 0.20 -27.29 16 19 H 0.06 3.01 6.77 -2.91 -0.02 2.99 16 20 C 0.01 0.72 5.30 84.66 0.45 1.17 16 21 N -0.92 -51.94 11.32 21.45 0.24 -51.70 16 22 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 H 0.08 0.67 7.66 -2.39 -0.02 0.65 16 27 H 0.08 0.80 7.66 -2.39 -0.02 0.78 16 28 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.19 1.52 6.30 -2.91 -0.02 1.50 16 30 H 0.18 2.27 7.61 -2.91 -0.02 2.24 16 31 H 0.15 4.01 7.58 -2.91 -0.02 3.99 16 32 H 0.08 2.73 7.71 -2.38 -0.02 2.71 16 33 H 0.04 1.40 6.80 -2.39 -0.02 1.38 16 34 H 0.02 0.74 6.51 -2.39 -0.02 0.73 16 35 H 0.06 2.43 6.41 -2.39 -0.02 2.42 16 36 H 0.06 1.96 6.66 -2.39 -0.02 1.94 16 37 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 38 H 0.03 1.46 6.47 -2.39 -0.02 1.44 16 39 H 0.03 1.15 6.75 -2.39 -0.02 1.14 16 40 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -64.93 330.69 3.45 -61.48 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 1.07 Total: 7.62 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 4.82 Total: -18.22 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -4.25 Total: -76.78 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.20 Total: -19.24 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -64.93 3.45 -61.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095691.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.896 kcal (2) G-P(sol) polarization free energy of solvation -64.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds