Wall clock time and date at job start Tue Mar 31 2020 07:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21278 * 119.99823 * 2 1 4 4 N 1.34780 * 120.00035 * 179.97438 * 2 1 3 5 5 C 1.46503 * 119.99763 * 180.02562 * 4 2 1 6 6 H 1.09002 * 109.47171 * 35.00368 * 5 4 2 7 7 C 1.53004 * 109.47269 * 275.00794 * 5 4 2 8 8 C 1.50703 * 109.46668 * 155.00822 * 5 4 2 9 9 O 1.21276 * 120.00467 * 20.67269 * 8 5 4 10 10 N 1.34780 * 119.99562 * 200.67657 * 8 5 4 11 11 C 1.46506 * 120.00024 * 5.69833 * 10 8 5 12 12 C 1.50699 * 109.46443 * 84.75563 * 11 10 8 13 13 H 1.07995 * 120.00641 * 359.97438 * 12 11 10 14 14 C 1.37887 * 119.99525 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99884 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99828 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47086 * 90.00221 * 16 14 12 18 18 H 1.48499 * 109.47001 * 210.00091 * 16 14 12 19 19 H 1.48501 * 109.47236 * 330.00146 * 16 14 12 20 20 C 1.46494 * 119.99905 * 185.70537 * 10 8 5 21 21 C 1.50702 * 109.47431 * 89.99333 * 20 10 8 22 22 C 1.34519 * 125.78227 * 89.99931 * 21 20 10 23 23 C 1.41385 * 106.83595 * 179.97438 * 22 21 20 24 24 C 1.34519 * 106.84305 * 0.02562 * 23 22 21 25 25 O 1.34295 * 125.79341 * 269.69339 * 21 20 10 26 26 H 1.09002 * 109.47308 * 269.99563 * 1 2 3 27 27 H 1.08993 * 109.47071 * 30.00255 * 1 2 3 28 28 H 1.09004 * 109.47018 * 150.00031 * 1 2 3 29 29 H 0.96996 * 120.00245 * 0.02562 * 4 2 1 30 30 H 1.08998 * 109.47339 * 64.40758 * 7 5 4 31 31 H 1.09006 * 109.46985 * 304.41052 * 7 5 4 32 32 H 1.08998 * 109.47174 * 184.41643 * 7 5 4 33 33 H 1.08998 * 109.46937 * 204.75511 * 11 10 8 34 34 H 1.09000 * 109.46917 * 324.75629 * 11 10 8 35 35 H 0.96996 * 120.00010 * 180.02562 * 15 14 12 36 36 H 1.08996 * 109.47492 * 209.99929 * 20 10 8 37 37 H 1.09006 * 109.46969 * 329.99448 * 20 10 8 38 38 H 1.07995 * 126.58503 * 0.04488 * 22 21 20 39 39 H 1.08005 * 126.58155 * 179.97438 * 23 22 21 40 40 H 1.07995 * 125.78699 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0090 -0.3252 0.5905 7 6 4.1565 -1.0415 -1.4358 8 6 4.1480 -2.4548 0.6019 9 8 3.4237 -3.4266 0.6457 10 7 5.4020 -2.5265 1.0906 11 6 6.2340 -1.3222 1.1524 12 6 5.9316 -0.5675 2.4212 13 1 5.1933 -0.9466 3.1122 14 6 6.5977 0.6073 2.6999 15 7 7.4964 1.0692 1.8583 16 14 6.2224 1.5432 4.2724 17 1 7.1186 1.0682 5.3570 18 1 6.4420 2.9947 4.0488 19 1 4.8082 1.3107 4.6613 20 6 5.9331 -3.8086 1.5598 21 6 6.6078 -4.5216 0.4164 22 6 7.9040 -4.4094 0.0746 23 6 8.1057 -5.2464 -1.0469 24 6 6.9206 -5.8195 -1.3237 25 8 6.0185 -5.3812 -0.4305 26 1 -0.3634 -0.0001 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6960 -2.0073 0.0005 30 1 3.8593 -0.0755 -1.8439 31 1 3.7303 -1.8395 -2.0439 32 1 5.2436 -1.1202 -1.4432 33 1 7.2862 -1.6065 1.1407 34 1 6.0195 -0.6878 0.2923 35 1 7.9652 1.8954 2.0545 36 1 6.6565 -3.6327 2.3559 37 1 5.1167 -4.4228 1.9400 38 1 8.6481 -3.7983 0.5637 39 1 9.0331 -5.3961 -1.5798 40 1 6.7286 -6.5178 -2.1248 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072621986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:26 Heat of formation + Delta-G solvation = -59.211992 kcal Electronic energy + Delta-G solvation = -24377.681134 eV Core-core repulsion = 20773.387065 eV Total energy + Delta-G solvation = -3604.294069 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.24957 -39.92464 -38.64052 -35.41454 -34.55931 -32.86187 -32.56053 -31.44971 -30.17916 -28.57539 -27.38835 -25.80203 -23.75134 -22.71536 -21.40816 -20.51343 -20.02335 -18.85122 -17.19367 -17.14535 -16.42971 -16.33969 -15.75139 -15.52111 -15.05543 -14.72539 -14.63055 -14.30660 -13.97504 -13.44808 -12.88307 -12.83951 -12.55709 -12.52863 -12.47936 -12.32302 -12.19606 -11.88776 -11.84994 -11.47345 -11.34092 -11.17580 -10.91098 -10.74384 -10.19225 -9.86322 -9.64380 -9.59338 -9.29644 -8.76906 -8.58716 -8.24268 -7.97328 -6.21057 -4.29248 1.95072 2.83394 2.91249 3.05536 3.24280 3.30036 3.32461 3.37086 3.51565 4.00161 4.33908 4.95859 5.03137 5.10925 5.14252 5.29090 5.30778 5.35160 5.46461 5.60481 5.65952 5.72549 5.87404 5.96125 6.04321 6.05428 6.21676 6.34909 6.35484 6.45967 6.57249 6.71447 6.77185 7.12546 7.33568 7.45233 7.72800 7.84664 7.98465 8.08503 8.54435 8.65963 8.82053 9.39543 10.85964 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.010039 B = 0.006974 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.478403 B = 4013.924539 C = 6093.898377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.507 3.493 3 O -0.541 6.541 4 N -0.713 5.713 5 C 0.122 3.878 6 H 0.134 0.866 7 C -0.151 4.151 8 C 0.522 3.478 9 O -0.566 6.566 10 N -0.587 5.587 11 C 0.233 3.767 12 C -0.546 4.546 13 H 0.062 0.938 14 C 0.070 3.930 15 N -0.886 5.886 16 Si 0.898 3.102 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.195 3.805 21 C -0.018 4.018 22 C -0.200 4.200 23 C -0.215 4.215 24 C -0.052 4.052 25 O -0.169 6.169 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.405 0.595 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.044 0.956 35 H 0.267 0.733 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.115 -8.962 -5.600 11.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.294 3.706 3 O -0.418 6.418 4 N -0.367 5.367 5 C 0.014 3.986 6 H 0.151 0.849 7 C -0.209 4.209 8 C 0.309 3.691 9 O -0.446 6.446 10 N -0.317 5.317 11 C 0.114 3.886 12 C -0.584 4.584 13 H 0.080 0.920 14 C -0.134 4.134 15 N -0.524 5.524 16 Si 0.725 3.275 17 H -0.205 1.205 18 H -0.209 1.209 19 H -0.197 1.197 20 C 0.071 3.929 21 C -0.069 4.069 22 C -0.220 4.220 23 C -0.235 4.235 24 C -0.120 4.120 25 O -0.064 6.064 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.241 0.759 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.131 0.869 37 H 0.110 0.890 38 H 0.167 0.833 39 H 0.162 0.838 40 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -5.210 -8.607 -5.575 11.503 hybrid contribution 0.135 0.203 0.693 0.735 sum -5.075 -8.404 -4.882 10.965 Atomic orbital electron populations 1.21850 0.91955 1.04456 1.04629 1.20750 0.90431 0.83527 0.75917 1.90759 1.70591 1.31238 1.49237 1.45909 1.06461 1.09213 1.75147 1.20887 0.80688 0.98575 0.98456 0.84881 1.22021 1.02135 1.02433 0.94329 1.20456 0.81952 0.89234 0.77423 1.90582 1.56344 1.38633 1.59060 1.48235 1.13760 1.09652 1.60018 1.19632 0.90616 0.80241 0.98160 1.21437 1.23636 1.07583 1.05766 0.92002 1.24912 0.94536 0.96910 0.97062 1.69906 1.24806 1.21831 1.35821 0.86490 0.78916 0.79132 0.82965 1.20510 1.20919 1.19729 1.19720 0.99028 0.84196 0.89977 1.23201 0.92612 0.95158 0.95955 1.21687 0.96491 1.03909 0.99912 1.21801 0.99039 1.02103 1.00527 1.23963 0.88158 1.03536 0.96367 1.84090 1.38922 1.48395 1.34974 0.89003 0.89096 0.90373 0.75920 0.91176 0.92679 0.90713 0.94065 0.93863 0.92375 0.86859 0.89024 0.83288 0.83822 0.78681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.30 36.00 0.37 -1.46 16 2 C 0.51 8.38 7.90 -10.98 -0.09 8.30 16 3 O -0.54 -11.49 16.76 5.56 0.09 -11.39 16 4 N -0.71 -11.89 5.04 -54.93 -0.28 -12.17 16 5 C 0.12 2.36 2.13 -69.08 -0.15 2.22 16 6 H 0.13 3.06 5.92 -51.93 -0.31 2.76 16 7 C -0.15 -2.64 9.19 37.16 0.34 -2.30 16 8 C 0.52 10.65 6.86 -10.98 -0.08 10.58 16 9 O -0.57 -11.98 15.49 5.56 0.09 -11.89 16 10 N -0.59 -11.97 2.45 -176.43 -0.43 -12.40 16 11 C 0.23 5.36 4.80 -5.19 -0.02 5.34 16 12 C -0.55 -14.02 8.70 -34.44 -0.30 -14.32 16 13 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 14 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 15 N -0.89 -24.33 13.29 55.43 0.74 -23.60 16 16 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 C 0.19 3.49 5.96 -5.20 -0.03 3.45 16 21 C -0.02 -0.30 6.90 -35.62 -0.25 -0.55 16 22 C -0.20 -3.20 10.81 -39.70 -0.43 -3.63 16 23 C -0.22 -2.99 10.91 -39.70 -0.43 -3.43 16 24 C -0.05 -0.71 12.09 29.42 0.36 -0.35 16 25 O -0.17 -2.89 10.65 5.73 0.06 -2.83 16 26 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.40 6.01 7.74 -40.82 -0.32 5.69 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.35 6.83 -51.93 -0.35 0.99 16 33 H 0.04 0.98 8.03 -51.93 -0.42 0.56 16 34 H 0.04 1.05 5.26 -51.93 -0.27 0.77 16 35 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.11 1.88 8.07 -51.93 -0.42 1.46 16 37 H 0.09 1.63 7.35 -51.93 -0.38 1.25 16 38 H 0.15 2.29 8.06 -52.49 -0.42 1.86 16 39 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 40 H 0.20 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 346.78 15.07 5.23 5.23 Total: -1.00 -31.77 346.78 -5.73 -37.50 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -5.40 Total: 10.04 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -0.80 Total: 5.60 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.03 Total: -48.17 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: 0.24 Total: -26.11 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.77 -5.73 -37.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072621986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.713 kcal (2) G-P(sol) polarization free energy of solvation -31.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds