Wall clock time and date at job start Tue Mar 31 2020 07:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21278 * 119.99823 * 2 1 4 4 N 1.34780 * 120.00035 * 179.97438 * 2 1 3 5 5 C 1.46503 * 119.99763 * 180.02562 * 4 2 1 6 6 H 1.09002 * 109.47171 * 35.00368 * 5 4 2 7 7 C 1.53004 * 109.47269 * 275.00794 * 5 4 2 8 8 C 1.50703 * 109.46668 * 155.00822 * 5 4 2 9 9 O 1.21276 * 120.00467 * 20.67269 * 8 5 4 10 10 N 1.34780 * 119.99562 * 200.67657 * 8 5 4 11 11 C 1.46506 * 120.00024 * 5.69833 * 10 8 5 12 12 C 1.50699 * 109.46443 * 84.75563 * 11 10 8 13 13 H 1.07995 * 120.00641 * 359.97438 * 12 11 10 14 14 C 1.37887 * 119.99525 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99884 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99828 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47086 * 90.00221 * 16 14 12 18 18 H 1.48499 * 109.47001 * 210.00091 * 16 14 12 19 19 H 1.48501 * 109.47236 * 330.00146 * 16 14 12 20 20 C 1.46494 * 119.99905 * 185.70537 * 10 8 5 21 21 C 1.50702 * 109.47431 * 89.99333 * 20 10 8 22 22 C 1.34519 * 125.78227 * 89.99931 * 21 20 10 23 23 C 1.41385 * 106.83595 * 179.97438 * 22 21 20 24 24 C 1.34519 * 106.84305 * 0.02562 * 23 22 21 25 25 O 1.34295 * 125.79341 * 269.69339 * 21 20 10 26 26 H 1.09002 * 109.47308 * 269.99563 * 1 2 3 27 27 H 1.08993 * 109.47071 * 30.00255 * 1 2 3 28 28 H 1.09004 * 109.47018 * 150.00031 * 1 2 3 29 29 H 0.96996 * 120.00245 * 0.02562 * 4 2 1 30 30 H 1.08998 * 109.47339 * 64.40758 * 7 5 4 31 31 H 1.09006 * 109.46985 * 304.41052 * 7 5 4 32 32 H 1.08998 * 109.47174 * 184.41643 * 7 5 4 33 33 H 1.08998 * 109.46937 * 204.75511 * 11 10 8 34 34 H 1.09000 * 109.46917 * 324.75629 * 11 10 8 35 35 H 0.96996 * 120.00010 * 180.02562 * 15 14 12 36 36 H 1.08996 * 109.47492 * 209.99929 * 20 10 8 37 37 H 1.09006 * 109.46969 * 329.99448 * 20 10 8 38 38 H 1.07995 * 126.58503 * 0.04488 * 22 21 20 39 39 H 1.08005 * 126.58155 * 179.97438 * 23 22 21 40 40 H 1.07995 * 125.78699 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0090 -0.3252 0.5905 7 6 4.1565 -1.0415 -1.4358 8 6 4.1480 -2.4548 0.6019 9 8 3.4237 -3.4266 0.6457 10 7 5.4020 -2.5265 1.0906 11 6 6.2340 -1.3222 1.1524 12 6 5.9316 -0.5675 2.4212 13 1 5.1933 -0.9466 3.1122 14 6 6.5977 0.6073 2.6999 15 7 7.4964 1.0692 1.8583 16 14 6.2224 1.5432 4.2724 17 1 7.1186 1.0682 5.3570 18 1 6.4420 2.9947 4.0488 19 1 4.8082 1.3107 4.6613 20 6 5.9331 -3.8086 1.5598 21 6 6.6078 -4.5216 0.4164 22 6 7.9040 -4.4094 0.0746 23 6 8.1057 -5.2464 -1.0469 24 6 6.9206 -5.8195 -1.3237 25 8 6.0185 -5.3812 -0.4305 26 1 -0.3634 -0.0001 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6960 -2.0073 0.0005 30 1 3.8593 -0.0755 -1.8439 31 1 3.7303 -1.8395 -2.0439 32 1 5.2436 -1.1202 -1.4432 33 1 7.2862 -1.6065 1.1407 34 1 6.0195 -0.6878 0.2923 35 1 7.9652 1.8954 2.0545 36 1 6.6565 -3.6327 2.3559 37 1 5.1167 -4.4228 1.9400 38 1 8.6481 -3.7983 0.5637 39 1 9.0331 -5.3961 -1.5798 40 1 6.7286 -6.5178 -2.1248 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072621986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:26 Heat of formation + Delta-G solvation = -80.488837 kcal Electronic energy + Delta-G solvation = -24378.603767 eV Core-core repulsion = 20773.387065 eV Total energy + Delta-G solvation = -3605.216703 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.45695 -41.45969 -40.12603 -37.08551 -36.07914 -34.71739 -33.87126 -32.81355 -31.51371 -29.72349 -29.20897 -27.22326 -25.45171 -24.39307 -22.60754 -21.78654 -21.38272 -20.36914 -18.90031 -18.50832 -18.08184 -17.85485 -17.14757 -17.00437 -16.46428 -16.38739 -16.02802 -15.92339 -15.33117 -14.85729 -14.53865 -14.31936 -14.00946 -13.77688 -13.71005 -13.62616 -13.43223 -13.32136 -13.22516 -13.02794 -12.95926 -12.71285 -12.60037 -12.52479 -12.10603 -11.79374 -11.02159 -10.95144 -10.80721 -10.61245 -10.21981 -9.74750 -9.40646 -8.24841 -6.38465 0.72339 1.37308 1.39678 1.43698 1.50120 1.63192 1.68922 2.00542 2.22459 2.36279 2.55049 3.07192 3.43758 3.83262 3.92674 4.08576 4.12188 4.17118 4.20563 4.36405 4.51809 4.54711 4.57420 4.67884 4.75797 4.80200 4.93350 4.98502 5.04093 5.07270 5.17954 5.20458 5.34780 5.54187 5.63663 5.71716 5.99344 6.22881 6.38184 6.55766 6.72301 7.06029 7.26276 7.33612 8.81295 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.010039 B = 0.006974 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.478403 B = 4013.924539 C = 6093.898377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.500 3.500 3 O -0.596 6.596 4 N -0.707 5.707 5 C 0.124 3.876 6 H 0.094 0.906 7 C -0.140 4.140 8 C 0.521 3.479 9 O -0.573 6.573 10 N -0.588 5.588 11 C 0.251 3.749 12 C -0.551 4.551 13 H 0.052 0.948 14 C 0.026 3.974 15 N -0.914 5.914 16 Si 0.952 3.048 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.277 1.277 20 C 0.194 3.806 21 C -0.045 4.045 22 C -0.203 4.203 23 C -0.224 4.224 24 C -0.041 4.041 25 O -0.190 6.190 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.416 0.584 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.032 0.968 34 H 0.029 0.971 35 H 0.268 0.732 36 H 0.119 0.881 37 H 0.090 0.910 38 H 0.149 0.851 39 H 0.172 0.828 40 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.982 -10.234 -6.199 13.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.290 3.710 3 O -0.476 6.476 4 N -0.361 5.361 5 C 0.015 3.985 6 H 0.112 0.888 7 C -0.199 4.199 8 C 0.309 3.691 9 O -0.454 6.454 10 N -0.318 5.318 11 C 0.131 3.869 12 C -0.589 4.589 13 H 0.071 0.929 14 C -0.175 4.175 15 N -0.552 5.552 16 Si 0.777 3.223 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.202 1.202 20 C 0.071 3.929 21 C -0.096 4.096 22 C -0.223 4.223 23 C -0.243 4.243 24 C -0.108 4.108 25 O -0.086 6.086 26 H 0.126 0.874 27 H 0.119 0.881 28 H 0.129 0.871 29 H 0.254 0.746 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.137 0.863 37 H 0.109 0.891 38 H 0.166 0.834 39 H 0.190 0.810 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -6.091 -9.925 -6.165 13.177 hybrid contribution 0.416 0.514 0.829 1.060 sum -5.675 -9.411 -5.337 12.217 Atomic orbital electron populations 1.21883 0.86874 1.06592 1.06280 1.21866 0.92715 0.82326 0.74102 1.90736 1.72191 1.33012 1.51688 1.45920 1.05230 1.10125 1.74866 1.20657 0.82598 0.96467 0.98749 0.88824 1.21919 1.01495 1.03009 0.93434 1.20592 0.81841 0.89432 0.77272 1.90565 1.56363 1.38953 1.59510 1.48182 1.13644 1.09861 1.60093 1.19211 0.90308 0.80822 0.96546 1.21636 1.23036 1.07904 1.06367 0.92927 1.25587 0.94536 0.97760 0.99651 1.69984 1.25707 1.22301 1.37237 0.85648 0.78515 0.77941 0.80187 1.19163 1.20810 1.20177 1.19767 0.99187 0.83080 0.90843 1.22943 0.93050 0.96787 0.96861 1.21905 0.96054 1.03841 1.00522 1.22147 1.00525 1.01598 0.99987 1.24874 0.87393 1.02805 0.95757 1.84066 1.40154 1.48678 1.35694 0.87362 0.88089 0.87135 0.74600 0.91362 0.90747 0.91713 0.94952 0.95266 0.92262 0.86259 0.89123 0.83354 0.81019 0.74412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 10.30 71.24 0.73 -2.26 16 2 C 0.50 16.25 7.90 87.66 0.69 16.94 16 3 O -0.60 -25.79 16.76 -3.02 -0.05 -25.84 16 4 N -0.71 -23.23 5.04 -446.08 -2.25 -25.48 16 5 C 0.12 4.91 2.13 44.25 0.09 5.01 16 6 H 0.09 4.52 5.92 -2.39 -0.01 4.50 16 7 C -0.14 -4.95 9.19 71.98 0.66 -4.29 16 8 C 0.52 21.47 6.86 87.66 0.60 22.07 16 9 O -0.57 -24.01 15.49 -3.02 -0.05 -24.06 16 10 N -0.59 -24.51 2.45 -830.50 -2.04 -26.55 16 11 C 0.25 11.97 4.80 85.63 0.41 12.38 16 12 C -0.55 -29.00 8.70 25.60 0.22 -28.78 16 13 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 14 C 0.03 1.39 5.46 84.66 0.46 1.85 16 15 N -0.91 -51.09 13.29 21.45 0.28 -50.80 16 16 Si 0.95 43.31 29.54 68.60 2.03 45.33 16 17 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 C 0.19 7.05 5.96 85.63 0.51 7.56 16 21 C -0.05 -1.56 6.90 24.83 0.17 -1.39 16 22 C -0.20 -6.38 10.81 22.19 0.24 -6.14 16 23 C -0.22 -5.71 10.91 22.19 0.24 -5.47 16 24 C -0.04 -1.01 12.09 66.97 0.81 -0.20 16 25 O -0.19 -6.27 10.65 -2.43 -0.03 -6.29 16 26 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.42 11.76 7.74 -92.71 -0.72 11.04 16 30 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 32 H 0.06 2.39 6.83 -2.39 -0.02 2.38 16 33 H 0.03 1.59 8.03 -2.39 -0.02 1.57 16 34 H 0.03 1.48 5.26 -2.39 -0.01 1.47 16 35 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 36 H 0.12 4.06 8.07 -2.39 -0.02 4.04 16 37 H 0.09 3.26 7.35 -2.38 -0.02 3.25 16 38 H 0.15 4.56 8.06 -2.91 -0.02 4.54 16 39 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 40 H 0.24 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -69.95 346.78 4.10 -65.85 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: 0.34 Total: 30.53 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 5.85 Total: 17.30 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -4.00 Total: -102.83 kcal Atomic # 8 Polarization: -56.07 SS G_CDS: -0.12 Total: -56.19 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -69.95 4.10 -65.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072621986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.634 kcal (2) G-P(sol) polarization free energy of solvation -69.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds