Wall clock time and date at job start Tue Mar 31 2020 08:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46787 * 2 1 4 4 C 1.46495 * 119.99647 * 269.99415 * 3 2 1 5 5 C 1.53005 * 109.47632 * 270.00296 * 4 3 2 6 6 O 1.42901 * 109.46803 * 64.99769 * 5 4 3 7 7 C 1.34770 * 120.00203 * 89.99967 * 3 2 1 8 8 O 1.21586 * 120.00138 * 179.97438 * 7 3 2 9 9 N 1.34776 * 119.99992 * 359.97438 * 7 3 2 10 10 C 1.40031 * 119.99952 * 175.43258 * 9 7 3 11 11 C 1.38908 * 120.00278 * 215.13808 * 10 9 7 12 12 C 1.38009 * 119.99794 * 180.02562 * 11 10 9 13 13 C 1.38898 * 120.00244 * 0.02562 * 12 11 10 14 14 O 1.35784 * 119.99926 * 179.97438 * 13 12 11 15 15 C 1.34813 * 117.00209 * 5.37517 * 14 13 12 16 16 H 1.08002 * 119.99396 * 354.95930 * 15 14 13 17 17 C 1.38627 * 120.00479 * 174.95758 * 15 14 13 18 18 N 1.31573 * 119.99652 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00309 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.47284 * 60.00124 * 19 17 15 21 21 H 1.48499 * 109.47146 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47203 * 300.00276 * 19 17 15 23 23 C 1.38899 * 120.00278 * 0.23424 * 13 12 11 24 24 C 1.38017 * 120.00177 * 359.48737 * 23 13 12 25 25 H 1.09000 * 109.46997 * 60.00391 * 1 2 3 26 26 H 1.09000 * 109.46779 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47494 * 300.00181 * 1 2 3 28 28 H 1.08988 * 109.47288 * 239.99609 * 2 1 3 29 29 H 1.09000 * 109.46997 * 119.99609 * 2 1 3 30 30 H 1.09004 * 109.47239 * 30.00220 * 4 3 2 31 31 H 1.08998 * 109.47342 * 150.00332 * 4 3 2 32 32 H 1.08997 * 109.47244 * 184.99911 * 5 4 3 33 33 H 1.09004 * 109.46743 * 305.00666 * 5 4 3 34 34 H 0.96701 * 113.99589 * 180.02562 * 6 5 4 35 35 H 0.96997 * 120.00259 * 355.43488 * 9 7 3 36 36 H 1.07998 * 119.99813 * 0.02562 * 11 10 9 37 37 H 1.08005 * 119.99594 * 179.97438 * 12 11 10 38 38 H 0.97004 * 120.00076 * 180.02562 * 18 17 15 39 39 H 1.08002 * 120.00331 * 179.72605 * 23 13 12 40 40 H 1.07990 * 120.00364 * 180.23611 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7104 6 8 3.8944 0.4432 -1.9934 7 6 2.2429 2.0167 1.1671 8 8 2.6485 3.1628 1.1671 9 7 2.0178 1.3815 2.3343 10 6 2.3411 2.0063 3.5451 11 6 2.8153 1.2523 4.6110 12 6 3.1334 1.8681 5.8044 13 6 2.9788 3.2418 5.9399 14 8 3.2913 3.8475 7.1143 15 6 3.8502 3.0783 8.0700 16 1 3.9555 2.0148 7.9141 17 6 4.2897 3.6524 9.2528 18 7 4.1610 4.9479 9.4429 19 14 5.0634 2.5865 10.5774 20 1 6.2725 1.9186 10.0318 21 1 5.4468 3.4349 11.7343 22 1 4.0868 1.5585 11.0187 23 6 2.4995 3.9951 4.8759 24 6 2.1868 3.3802 3.6805 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8898 29 1 1.8933 -0.5138 0.8900 30 1 1.5817 1.6876 -2.0284 31 1 2.0955 3.1410 -1.1385 32 1 3.9156 2.4161 -2.6065 33 1 4.3863 2.1342 -0.9131 34 1 4.7901 0.2173 -2.2796 35 1 1.6319 0.4916 2.3357 36 1 2.9351 0.1841 4.5057 37 1 3.5017 1.2817 6.6332 38 1 4.4688 5.3497 10.2704 39 1 2.3752 5.0626 4.9828 40 1 1.8178 3.9664 2.8521 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076036744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:04 Heat of formation + Delta-G solvation = -66.797600 kcal Electronic energy + Delta-G solvation = -23284.699009 eV Core-core repulsion = 19680.076003 eV Total energy + Delta-G solvation = -3604.623006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.54862 -38.84973 -37.47258 -36.46111 -35.64509 -33.90401 -32.14272 -31.37911 -30.14384 -29.15872 -27.37692 -25.29311 -23.58485 -23.30691 -22.15358 -21.13516 -19.61970 -18.40752 -17.90080 -17.49876 -17.21689 -16.61410 -15.85327 -15.32222 -14.77567 -14.52090 -14.27765 -14.13637 -14.04532 -13.81350 -13.51283 -13.30629 -13.06965 -12.75301 -12.44690 -12.32781 -12.09697 -11.79641 -11.66762 -11.55435 -11.43858 -11.24211 -10.97749 -10.70243 -10.45429 -10.31340 -9.82720 -9.57267 -9.18339 -8.80133 -8.62120 -8.13977 -6.85209 -6.39960 -3.98167 2.21793 2.29709 2.66473 3.15259 3.16130 3.19593 3.34505 3.94615 4.00649 4.03477 4.63342 4.70766 4.86177 4.93437 5.05118 5.08839 5.13985 5.19441 5.39463 5.47521 5.53019 5.56229 5.61302 5.66553 5.84885 5.94175 6.17791 6.24452 6.32072 6.46002 6.75584 6.91277 6.97129 7.15943 7.28253 7.29376 7.34019 7.48145 7.86589 8.03346 8.05390 8.72195 9.05375 9.76856 10.78171 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.029963 B = 0.002944 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.265161 B = 9509.681821 C = 9600.184582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.108 3.892 3 N -0.624 5.624 4 C 0.137 3.863 5 C 0.057 3.943 6 O -0.573 6.573 7 C 0.701 3.299 8 O -0.578 6.578 9 N -0.674 5.674 10 C 0.054 3.946 11 C -0.093 4.093 12 C -0.219 4.219 13 C 0.146 3.854 14 O -0.178 6.178 15 C -0.392 4.392 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.864 5.864 19 Si 0.940 3.060 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.178 4.178 24 C -0.067 4.067 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.377 0.623 35 H 0.397 0.603 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.270 0.730 39 H 0.120 0.880 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.196 -11.245 -20.335 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.016 4.016 3 N -0.361 5.361 4 C 0.013 3.987 5 C -0.022 4.022 6 O -0.379 6.379 7 C 0.403 3.597 8 O -0.455 6.455 9 N -0.322 5.322 10 C -0.039 4.039 11 C -0.114 4.114 12 C -0.239 4.239 13 C 0.092 3.908 14 O -0.082 6.082 15 C -0.468 4.468 16 H 0.108 0.892 17 C -0.165 4.165 18 N -0.499 5.499 19 Si 0.765 3.235 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.198 4.198 24 C -0.087 4.087 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.224 0.776 35 H 0.233 0.767 36 H 0.127 0.873 37 H 0.148 0.852 38 H 0.080 0.920 39 H 0.138 0.862 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.497 -10.022 -19.918 22.746 hybrid contribution 0.868 -1.113 0.464 1.485 sum -3.629 -11.135 -19.454 22.707 Atomic orbital electron populations 1.22272 0.96147 1.02257 1.02669 1.21506 0.93844 0.82632 1.03577 1.47063 1.70334 1.14260 1.04476 1.21336 0.94546 0.98692 0.84105 1.22710 0.98218 0.82195 0.99066 1.86434 1.35689 1.25433 1.90310 1.15937 0.78701 0.84689 0.80340 1.90907 1.52474 1.16320 1.85822 1.42469 1.66059 1.20210 1.03488 1.17078 1.09259 0.92507 0.85070 1.20449 0.99569 0.98361 0.92989 1.20943 1.09701 0.94783 0.98479 1.19406 0.93227 0.91074 0.87116 1.83992 1.68539 1.37182 1.18466 1.21257 1.39150 0.91746 0.94645 0.89184 1.25270 0.97097 0.96338 0.97840 1.70040 1.43832 1.09891 1.26122 0.85795 0.79391 0.78934 0.79368 1.19552 1.20328 1.19544 1.20157 1.08313 0.99647 0.91715 1.20773 0.98479 0.93049 0.96415 0.92259 0.91460 0.92337 0.89120 0.91168 0.90110 0.88324 0.92880 0.92876 0.77623 0.76688 0.87335 0.85170 0.92025 0.86196 0.85181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.24 37.16 0.38 -0.91 16 2 C 0.11 0.92 5.67 -4.04 -0.02 0.90 16 3 N -0.62 -7.13 2.44 -179.43 -0.44 -7.57 16 4 C 0.14 1.34 5.81 -4.04 -0.02 1.32 16 5 C 0.06 0.52 7.39 37.16 0.27 0.79 16 6 O -0.57 -4.83 12.48 -35.23 -0.44 -5.27 16 7 C 0.70 10.84 8.12 -86.92 -0.71 10.13 16 8 O -0.58 -11.04 13.36 5.29 0.07 -10.97 16 9 N -0.67 -10.05 5.18 -14.18 -0.07 -10.13 16 10 C 0.05 1.00 6.30 -83.61 -0.53 0.47 16 11 C -0.09 -1.73 9.96 -39.42 -0.39 -2.12 16 12 C -0.22 -4.81 9.16 -39.42 -0.36 -5.17 16 13 C 0.15 3.62 6.65 -39.09 -0.26 3.36 16 14 O -0.18 -5.19 9.76 -0.01 0.00 -5.19 16 15 C -0.39 -11.07 9.48 30.88 0.29 -10.77 16 16 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.69 13.67 55.48 0.76 -24.93 16 19 Si 0.94 20.68 29.55 -169.99 -5.02 15.65 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 C -0.18 -4.04 9.98 -39.42 -0.39 -4.44 16 24 C -0.07 -1.38 8.69 -39.41 -0.34 -1.72 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.74 7.11 -51.94 -0.37 0.37 16 29 H 0.07 0.57 6.44 -51.93 -0.33 0.24 16 30 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 31 H 0.10 1.05 7.42 -51.93 -0.39 0.66 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.38 1.75 9.12 45.56 0.42 2.16 16 35 H 0.40 4.65 6.62 -40.82 -0.27 4.38 16 36 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.13 2.81 5.63 -52.48 -0.30 2.52 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.12 2.64 8.06 -52.49 -0.42 2.21 16 40 H 0.13 2.64 6.22 -52.49 -0.33 2.31 16 LS Contribution 337.67 15.07 5.09 5.09 Total: -1.00 -34.61 337.67 -6.58 -41.20 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -4.35 Total: 9.30 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -2.18 Total: -7.19 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.25 Total: -42.63 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.37 Total: -21.43 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.61 -6.58 -41.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076036744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.601 kcal (2) G-P(sol) polarization free energy of solvation -34.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds