Wall clock time and date at job start Tue Mar 31 2020 08:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46787 * 2 1 4 4 C 1.46495 * 119.99647 * 269.99415 * 3 2 1 5 5 C 1.53005 * 109.47632 * 270.00296 * 4 3 2 6 6 O 1.42901 * 109.46803 * 64.99769 * 5 4 3 7 7 C 1.34770 * 120.00203 * 89.99967 * 3 2 1 8 8 O 1.21586 * 120.00138 * 179.97438 * 7 3 2 9 9 N 1.34776 * 119.99992 * 359.97438 * 7 3 2 10 10 C 1.40031 * 119.99952 * 175.43258 * 9 7 3 11 11 C 1.38908 * 120.00278 * 215.13808 * 10 9 7 12 12 C 1.38009 * 119.99794 * 180.02562 * 11 10 9 13 13 C 1.38898 * 120.00244 * 0.02562 * 12 11 10 14 14 O 1.35784 * 119.99926 * 179.97438 * 13 12 11 15 15 C 1.34813 * 117.00209 * 5.37517 * 14 13 12 16 16 H 1.08002 * 119.99396 * 354.95930 * 15 14 13 17 17 C 1.38627 * 120.00479 * 174.95758 * 15 14 13 18 18 N 1.31573 * 119.99652 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00309 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.47284 * 60.00124 * 19 17 15 21 21 H 1.48499 * 109.47146 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47203 * 300.00276 * 19 17 15 23 23 C 1.38899 * 120.00278 * 0.23424 * 13 12 11 24 24 C 1.38017 * 120.00177 * 359.48737 * 23 13 12 25 25 H 1.09000 * 109.46997 * 60.00391 * 1 2 3 26 26 H 1.09000 * 109.46779 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47494 * 300.00181 * 1 2 3 28 28 H 1.08988 * 109.47288 * 239.99609 * 2 1 3 29 29 H 1.09000 * 109.46997 * 119.99609 * 2 1 3 30 30 H 1.09004 * 109.47239 * 30.00220 * 4 3 2 31 31 H 1.08998 * 109.47342 * 150.00332 * 4 3 2 32 32 H 1.08997 * 109.47244 * 184.99911 * 5 4 3 33 33 H 1.09004 * 109.46743 * 305.00666 * 5 4 3 34 34 H 0.96701 * 113.99589 * 180.02562 * 6 5 4 35 35 H 0.96997 * 120.00259 * 355.43488 * 9 7 3 36 36 H 1.07998 * 119.99813 * 0.02562 * 11 10 9 37 37 H 1.08005 * 119.99594 * 179.97438 * 12 11 10 38 38 H 0.97004 * 120.00076 * 180.02562 * 18 17 15 39 39 H 1.08002 * 120.00331 * 179.72605 * 23 13 12 40 40 H 1.07990 * 120.00364 * 180.23611 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7104 6 8 3.8944 0.4432 -1.9934 7 6 2.2429 2.0167 1.1671 8 8 2.6485 3.1628 1.1671 9 7 2.0178 1.3815 2.3343 10 6 2.3411 2.0063 3.5451 11 6 2.8153 1.2523 4.6110 12 6 3.1334 1.8681 5.8044 13 6 2.9788 3.2418 5.9399 14 8 3.2913 3.8475 7.1143 15 6 3.8502 3.0783 8.0700 16 1 3.9555 2.0148 7.9141 17 6 4.2897 3.6524 9.2528 18 7 4.1610 4.9479 9.4429 19 14 5.0634 2.5865 10.5774 20 1 6.2725 1.9186 10.0318 21 1 5.4468 3.4349 11.7343 22 1 4.0868 1.5585 11.0187 23 6 2.4995 3.9951 4.8759 24 6 2.1868 3.3802 3.6805 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8898 29 1 1.8933 -0.5138 0.8900 30 1 1.5817 1.6876 -2.0284 31 1 2.0955 3.1410 -1.1385 32 1 3.9156 2.4161 -2.6065 33 1 4.3863 2.1342 -0.9131 34 1 4.7901 0.2173 -2.2796 35 1 1.6319 0.4916 2.3357 36 1 2.9351 0.1841 4.5057 37 1 3.5017 1.2817 6.6332 38 1 4.4688 5.3497 10.2704 39 1 2.3752 5.0626 4.9828 40 1 1.8178 3.9664 2.8521 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076036744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:04 Heat of formation + Delta-G solvation = -92.477170 kcal Electronic energy + Delta-G solvation = -23285.812558 eV Core-core repulsion = 19680.076003 eV Total energy + Delta-G solvation = -3605.736556 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.80486 -40.55696 -38.67796 -37.74583 -36.63901 -35.35598 -34.12696 -32.14421 -31.83202 -30.28080 -28.77379 -27.26132 -24.47165 -24.22840 -23.82476 -22.64532 -20.92113 -19.80825 -19.34674 -18.88775 -18.25038 -18.03159 -16.97045 -16.50312 -16.33499 -16.20691 -15.59541 -15.47905 -15.17338 -15.04305 -14.76063 -14.57101 -14.46760 -14.09095 -13.76158 -13.57796 -13.27141 -13.14773 -13.00764 -12.79195 -12.65593 -12.45653 -12.34725 -12.14336 -11.96504 -11.35444 -11.27573 -11.00737 -10.84939 -10.52006 -9.83027 -9.71386 -8.56236 -8.43541 -6.11231 0.53653 0.60146 1.37574 1.48220 1.54222 1.57958 2.07444 2.20877 2.85008 2.88810 3.17657 3.40643 3.54293 4.00917 4.05641 4.14935 4.15577 4.22309 4.39192 4.40816 4.51327 4.55285 4.62289 4.73576 4.80030 4.85261 4.94560 5.00290 5.07346 5.21601 5.32110 5.35736 5.41862 5.57566 5.61850 5.71100 5.94405 6.04566 6.20533 6.85691 6.89259 7.00413 7.50747 7.81685 8.79635 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.029963 B = 0.002944 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.265161 B = 9509.681821 C = 9600.184582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.104 3.896 3 N -0.614 5.614 4 C 0.129 3.871 5 C 0.065 3.935 6 O -0.581 6.581 7 C 0.695 3.305 8 O -0.619 6.619 9 N -0.664 5.664 10 C 0.080 3.920 11 C -0.082 4.082 12 C -0.218 4.218 13 C 0.107 3.893 14 O -0.232 6.232 15 C -0.414 4.414 16 H 0.107 0.893 17 C -0.025 4.025 18 N -0.924 5.924 19 Si 1.021 2.979 20 H -0.257 1.257 21 H -0.275 1.275 22 H -0.254 1.254 23 C -0.189 4.189 24 C -0.072 4.072 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.044 0.956 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.024 0.976 34 H 0.394 0.606 35 H 0.417 0.583 36 H 0.156 0.844 37 H 0.133 0.867 38 H 0.272 0.728 39 H 0.111 0.889 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.404 -14.990 -22.362 27.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.350 5.350 4 C 0.006 3.994 5 C -0.014 4.014 6 O -0.389 6.389 7 C 0.398 3.602 8 O -0.500 6.500 9 N -0.314 5.314 10 C -0.014 4.014 11 C -0.102 4.102 12 C -0.238 4.238 13 C 0.056 3.944 14 O -0.139 6.139 15 C -0.490 4.490 16 H 0.124 0.876 17 C -0.222 4.222 18 N -0.562 5.562 19 Si 0.839 3.161 20 H -0.181 1.181 21 H -0.199 1.199 22 H -0.178 1.178 23 C -0.209 4.209 24 C -0.093 4.093 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.063 0.937 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.125 0.875 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.042 0.958 34 H 0.244 0.756 35 H 0.257 0.743 36 H 0.174 0.826 37 H 0.151 0.849 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.737 -13.853 -22.051 26.469 hybrid contribution 0.822 -0.057 0.669 1.061 sum -3.915 -13.910 -21.382 25.807 Atomic orbital electron populations 1.22226 0.94953 1.03515 1.02082 1.21743 0.94714 0.80772 1.04555 1.47167 1.68956 1.15254 1.03592 1.21542 0.95878 0.98144 0.83826 1.22548 0.96822 0.82986 0.99093 1.86377 1.37351 1.24784 1.90361 1.16148 0.78517 0.84297 0.81271 1.90890 1.54252 1.18321 1.86507 1.42298 1.66069 1.20880 1.02197 1.17181 1.06055 0.91821 0.86343 1.20789 0.97667 1.00553 0.91213 1.21100 1.09229 0.93541 0.99907 1.19839 0.94972 0.92775 0.86778 1.83960 1.70985 1.38778 1.20136 1.21845 1.39396 0.92663 0.95093 0.87618 1.26633 0.97416 0.97870 1.00308 1.70205 1.46391 1.12350 1.27253 0.84624 0.78783 0.77045 0.75605 1.18126 1.19929 1.17831 1.20261 1.08729 0.99568 0.92333 1.20847 0.98650 0.94356 0.95404 0.92137 0.89290 0.93653 0.87993 0.90354 0.87470 0.89659 0.90576 0.95757 0.75646 0.74338 0.82615 0.84895 0.91911 0.87049 0.85012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 10.24 71.98 0.74 -1.14 16 2 C 0.10 1.39 5.67 86.38 0.49 1.88 16 3 N -0.61 -12.46 2.44 -839.85 -2.05 -14.50 16 4 C 0.13 2.24 5.81 86.38 0.50 2.74 16 5 C 0.06 1.03 7.39 71.98 0.53 1.56 16 6 O -0.58 -7.99 12.48 -148.98 -1.86 -9.85 16 7 C 0.70 20.19 8.12 179.06 1.45 21.65 16 8 O -0.62 -23.35 13.36 -3.99 -0.05 -23.41 16 9 N -0.66 -17.91 5.18 -317.05 -1.64 -19.55 16 10 C 0.08 2.83 6.30 38.15 0.24 3.07 16 11 C -0.08 -2.82 9.96 22.38 0.22 -2.60 16 12 C -0.22 -9.45 9.16 22.37 0.20 -9.24 16 13 C 0.11 5.52 6.65 22.59 0.15 5.67 16 14 O -0.23 -14.28 9.76 -22.94 -0.22 -14.50 16 15 C -0.41 -24.24 9.48 67.91 0.64 -23.59 16 16 H 0.11 5.55 5.20 -2.91 -0.02 5.53 16 17 C -0.03 -1.44 5.49 84.82 0.47 -0.98 16 18 N -0.92 -57.66 13.67 21.61 0.30 -57.36 16 19 Si 1.02 42.88 29.55 68.60 2.03 44.90 16 20 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 22 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 23 C -0.19 -8.94 9.98 22.38 0.22 -8.71 16 24 C -0.07 -2.97 8.69 22.38 0.19 -2.78 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.10 1.23 7.11 -2.39 -0.02 1.21 16 29 H 0.08 0.94 6.44 -2.39 -0.02 0.92 16 30 H 0.11 1.31 8.07 -2.39 -0.02 1.29 16 31 H 0.09 1.73 7.42 -2.39 -0.02 1.71 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.39 2.50 9.12 -74.06 -0.68 1.83 16 35 H 0.42 8.07 6.62 -92.71 -0.61 7.45 16 36 H 0.16 3.93 8.06 -2.91 -0.02 3.90 16 37 H 0.13 5.63 5.63 -2.91 -0.02 5.62 16 38 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 39 H 0.11 5.28 8.06 -2.91 -0.02 5.26 16 40 H 0.13 5.41 6.22 -2.92 -0.02 5.39 16 Total: -1.00 -79.99 337.67 2.36 -77.64 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: -0.20 Total: 29.11 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 6.06 Total: -12.47 kcal Atomic # 7 Polarization: -88.03 SS G_CDS: -3.39 Total: -91.42 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -2.14 Total: -47.75 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -79.99 2.36 -77.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076036744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.842 kcal (2) G-P(sol) polarization free energy of solvation -79.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds