Wall clock time and date at job start Tue Mar 31 2020 07:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47209 * 2 1 4 4 C 1.53003 * 109.47162 * 240.00287 * 2 1 3 5 5 O 1.42901 * 109.47117 * 304.99807 * 4 2 1 6 6 N 1.46492 * 109.47440 * 120.00072 * 2 1 3 7 7 C 1.34777 * 120.00434 * 275.00028 * 6 2 1 8 8 O 1.21591 * 119.99393 * 0.02562 * 7 6 2 9 9 N 1.34768 * 120.00297 * 179.97438 * 7 6 2 10 10 C 1.46503 * 120.00179 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47448 * 180.02562 * 10 9 7 12 12 C 1.38299 * 119.93217 * 269.73027 * 11 10 9 13 13 C 1.38093 * 120.06953 * 179.72477 * 12 11 10 14 14 C 1.38883 * 119.92808 * 0.56550 * 13 12 11 15 15 O 1.35754 * 120.06438 * 179.68623 * 14 13 12 16 16 C 1.34826 * 116.99724 * 174.49160 * 15 14 13 17 17 H 1.07998 * 120.00100 * 5.04739 * 16 15 14 18 18 C 1.38654 * 119.99970 * 185.05457 * 16 15 14 19 19 N 1.31557 * 120.00012 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99959 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47303 * 60.00249 * 20 18 16 22 22 H 1.48499 * 109.46956 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47359 * 299.99968 * 20 18 16 24 24 C 1.38871 * 119.86468 * 359.70509 * 14 13 12 25 25 C 1.38101 * 119.93230 * 0.02562 * 24 14 13 26 26 H 1.09004 * 109.47423 * 59.99868 * 1 2 3 27 27 H 1.09003 * 109.47209 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47200 * 299.99803 * 1 2 3 29 29 H 1.09004 * 109.47239 * 64.99764 * 4 2 1 30 30 H 1.08998 * 109.47092 * 184.99685 * 4 2 1 31 31 H 0.96698 * 113.99952 * 179.97438 * 5 4 2 32 32 H 0.97007 * 119.99685 * 95.00057 * 6 2 1 33 33 H 0.97000 * 120.00448 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.46848 * 59.99850 * 10 9 7 35 35 H 1.09001 * 109.46885 * 300.00464 * 10 9 7 36 36 H 1.08005 * 119.96050 * 359.97425 * 12 11 10 37 37 H 1.07999 * 120.03730 * 180.26989 * 13 12 11 38 38 H 0.97002 * 120.00021 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.03853 * 179.97438 * 24 14 13 40 40 H 1.07997 * 119.96732 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.4702 -2.0303 -1.3095 6 7 2.0183 -0.6906 1.1961 7 6 2.1471 -0.0183 2.3571 8 8 1.8574 1.1613 2.4118 9 7 2.5959 -0.6538 3.4575 10 6 2.7354 0.0769 4.7197 11 6 3.2521 -0.8551 5.7853 12 6 2.3630 -1.5676 6.5692 13 6 2.8334 -2.4267 7.5426 14 6 4.2008 -2.5659 7.7419 15 8 4.6662 -3.4049 8.7024 16 6 6.0014 -3.5801 8.7674 17 1 6.6536 -3.0026 8.1290 18 6 6.5373 -4.5019 9.6538 19 7 5.7429 -5.2051 10.4318 20 14 8.3872 -4.7452 9.7434 21 1 9.0372 -3.4645 10.1211 22 1 8.7018 -5.7786 10.7624 23 1 8.8934 -5.1854 8.4186 24 6 5.0909 -1.8449 6.9569 25 6 4.6144 -0.9915 5.9813 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7516 -0.1582 -2.1370 30 1 3.1263 -0.7994 -1.2057 31 1 1.7499 -2.5460 -2.0782 32 1 2.2491 -1.6318 1.1524 33 1 2.8267 -1.5949 3.4140 34 1 1.7646 0.4708 5.0206 35 1 3.4365 0.9008 4.5870 36 1 1.2996 -1.4550 6.4171 37 1 2.1387 -2.9862 8.1516 38 1 6.1178 -5.8502 11.0516 39 1 6.1548 -1.9507 7.1097 40 1 5.3061 -0.4302 5.3708 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076084304.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:14 Heat of formation + Delta-G solvation = -87.843784 kcal Electronic energy + Delta-G solvation = -22463.638380 eV Core-core repulsion = 18858.102743 eV Total energy + Delta-G solvation = -3605.535637 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.08842 -39.10502 -37.78898 -36.83605 -34.93317 -34.25278 -32.38256 -31.17826 -30.26074 -29.35627 -26.75571 -25.84139 -24.64146 -22.04303 -21.73266 -20.64237 -20.57988 -18.61259 -18.05784 -17.76433 -17.05563 -16.48740 -15.49059 -15.18838 -14.85690 -14.70985 -14.50503 -14.39452 -13.99702 -13.70618 -13.66729 -13.41860 -13.09930 -12.83144 -12.76981 -12.47452 -12.09328 -11.74230 -11.63684 -11.38001 -11.24339 -10.94507 -10.78240 -10.68359 -10.50120 -10.49692 -10.12673 -9.42510 -9.26666 -8.90589 -8.72624 -8.27221 -7.32151 -6.52516 -4.11520 2.04511 2.14300 2.87424 3.09080 3.10339 3.12901 3.28307 3.83956 3.90661 4.28652 4.53267 4.60823 4.75036 4.96178 5.02389 5.17483 5.21029 5.26398 5.32719 5.46715 5.55013 5.68531 5.78103 5.83946 5.96518 6.13141 6.13313 6.36674 6.46680 6.60174 6.64822 6.81646 6.93313 7.03003 7.16895 7.17626 7.29114 7.35943 7.72683 7.92113 8.10821 8.67974 8.92689 9.61126 10.64979 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.025222 B = 0.002541 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.882291 B =11018.651720 C =11449.272059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.163 3.837 3 H 0.097 0.903 4 C 0.067 3.933 5 O -0.569 6.569 6 N -0.742 5.742 7 C 0.701 3.299 8 O -0.600 6.600 9 N -0.738 5.738 10 C 0.198 3.802 11 C -0.214 4.214 12 C -0.053 4.053 13 C -0.195 4.195 14 C 0.160 3.840 15 O -0.173 6.173 16 C -0.394 4.394 17 H 0.093 0.907 18 C 0.040 3.960 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.237 4.237 25 C -0.050 4.050 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.381 0.619 32 H 0.400 0.600 33 H 0.397 0.603 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.272 0.728 39 H 0.128 0.872 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.169 6.192 -20.472 22.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.057 3.943 3 H 0.115 0.885 4 C -0.011 4.011 5 O -0.375 6.375 6 N -0.399 5.399 7 C 0.401 3.599 8 O -0.479 6.479 9 N -0.393 5.393 10 C 0.075 3.925 11 C -0.215 4.215 12 C -0.072 4.072 13 C -0.215 4.215 14 C 0.106 3.894 15 O -0.076 6.076 16 C -0.470 4.470 17 H 0.110 0.890 18 C -0.164 4.164 19 N -0.494 5.494 20 Si 0.766 3.234 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.257 4.257 25 C -0.069 4.069 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.228 0.772 32 H 0.234 0.766 33 H 0.231 0.769 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.082 0.918 39 H 0.146 0.854 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.799 7.182 -19.468 21.545 hybrid contribution 1.502 -1.195 -0.505 1.985 sum -4.297 5.987 -19.972 21.288 Atomic orbital electron populations 1.22088 0.94967 1.02711 1.02053 1.20844 0.94862 0.96352 0.82197 0.88471 1.22512 0.96940 0.84302 0.97392 1.86497 1.72999 1.27216 1.50760 1.45148 1.71971 1.13921 1.08809 1.16052 0.78348 0.85106 0.80412 1.90895 1.57711 1.14515 1.84766 1.45507 1.70562 1.14087 1.09130 1.19821 1.00378 0.92451 0.79827 1.19235 0.93625 1.06088 1.02569 1.20542 0.98176 0.94393 0.94120 1.20218 0.92982 1.05066 1.03216 1.19441 0.92717 0.89583 0.87699 1.83979 1.25352 1.54384 1.43882 1.21306 0.78963 1.23125 1.23605 0.88986 1.25315 1.00589 0.95116 0.95428 1.70027 1.35525 1.22574 1.21289 0.85766 0.80396 0.78631 0.78570 1.19429 1.20214 1.19446 1.21153 1.00395 1.03007 1.01115 1.20646 0.94142 0.96105 0.96005 0.92158 0.91654 0.92073 0.92137 0.92912 0.77224 0.76634 0.76885 0.91772 0.91826 0.86940 0.86387 0.91830 0.85450 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.29 37.15 0.35 -1.18 16 2 C 0.16 1.52 2.98 -67.94 -0.20 1.32 16 3 H 0.10 1.00 7.58 -51.93 -0.39 0.60 16 4 C 0.07 0.42 6.79 37.16 0.25 0.67 16 5 O -0.57 -3.69 12.51 -35.23 -0.44 -4.13 16 6 N -0.74 -7.91 5.06 -58.68 -0.30 -8.21 16 7 C 0.70 9.79 8.53 -86.93 -0.74 9.05 16 8 O -0.60 -10.52 16.01 5.29 0.08 -10.43 16 9 N -0.74 -9.69 5.55 -66.41 -0.37 -10.06 16 10 C 0.20 2.87 5.80 -5.19 -0.03 2.84 16 11 C -0.21 -3.47 5.25 -104.57 -0.55 -4.02 16 12 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 13 C -0.20 -3.97 9.99 -39.40 -0.39 -4.36 16 14 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 15 O -0.17 -4.82 9.76 0.05 0.00 -4.82 16 16 C -0.39 -10.73 9.49 30.89 0.29 -10.43 16 17 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -24.73 13.67 55.48 0.76 -23.97 16 20 Si 0.94 20.02 29.55 -169.99 -5.02 15.00 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 24 C -0.24 -4.93 9.17 -39.40 -0.36 -5.29 16 25 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.65 7.56 -51.93 -0.39 0.26 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.38 0.86 9.12 45.56 0.42 1.27 16 32 H 0.40 3.64 8.40 -40.82 -0.34 3.30 16 33 H 0.40 4.65 8.48 -40.82 -0.35 4.31 16 34 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 35 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 37 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 38 H 0.27 7.17 8.31 -40.82 -0.34 6.84 16 39 H 0.13 2.66 5.64 -52.49 -0.30 2.36 16 40 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 345.43 15.07 5.21 5.21 Total: -1.00 -32.99 345.43 -7.15 -40.15 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -4.56 Total: 10.76 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -2.51 Total: -9.49 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.09 Total: -42.24 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.36 Total: -19.39 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.99 -7.15 -40.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076084304.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.697 kcal (2) G-P(sol) polarization free energy of solvation -32.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds