Wall clock time and date at job start Tue Mar 31 2020 07:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47209 * 2 1 4 4 C 1.53003 * 109.47162 * 240.00287 * 2 1 3 5 5 O 1.42901 * 109.47117 * 304.99807 * 4 2 1 6 6 N 1.46492 * 109.47440 * 120.00072 * 2 1 3 7 7 C 1.34777 * 120.00434 * 275.00028 * 6 2 1 8 8 O 1.21591 * 119.99393 * 0.02562 * 7 6 2 9 9 N 1.34768 * 120.00297 * 179.97438 * 7 6 2 10 10 C 1.46503 * 120.00179 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47448 * 180.02562 * 10 9 7 12 12 C 1.38299 * 119.93217 * 269.73027 * 11 10 9 13 13 C 1.38093 * 120.06953 * 179.72477 * 12 11 10 14 14 C 1.38883 * 119.92808 * 0.56550 * 13 12 11 15 15 O 1.35754 * 120.06438 * 179.68623 * 14 13 12 16 16 C 1.34826 * 116.99724 * 174.49160 * 15 14 13 17 17 H 1.07998 * 120.00100 * 5.04739 * 16 15 14 18 18 C 1.38654 * 119.99970 * 185.05457 * 16 15 14 19 19 N 1.31557 * 120.00012 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99959 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47303 * 60.00249 * 20 18 16 22 22 H 1.48499 * 109.46956 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47359 * 299.99968 * 20 18 16 24 24 C 1.38871 * 119.86468 * 359.70509 * 14 13 12 25 25 C 1.38101 * 119.93230 * 0.02562 * 24 14 13 26 26 H 1.09004 * 109.47423 * 59.99868 * 1 2 3 27 27 H 1.09003 * 109.47209 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47200 * 299.99803 * 1 2 3 29 29 H 1.09004 * 109.47239 * 64.99764 * 4 2 1 30 30 H 1.08998 * 109.47092 * 184.99685 * 4 2 1 31 31 H 0.96698 * 113.99952 * 179.97438 * 5 4 2 32 32 H 0.97007 * 119.99685 * 95.00057 * 6 2 1 33 33 H 0.97000 * 120.00448 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.46848 * 59.99850 * 10 9 7 35 35 H 1.09001 * 109.46885 * 300.00464 * 10 9 7 36 36 H 1.08005 * 119.96050 * 359.97425 * 12 11 10 37 37 H 1.07999 * 120.03730 * 180.26989 * 13 12 11 38 38 H 0.97002 * 120.00021 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.03853 * 179.97438 * 24 14 13 40 40 H 1.07997 * 119.96732 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.4702 -2.0303 -1.3095 6 7 2.0183 -0.6906 1.1961 7 6 2.1471 -0.0183 2.3571 8 8 1.8574 1.1613 2.4118 9 7 2.5959 -0.6538 3.4575 10 6 2.7354 0.0769 4.7197 11 6 3.2521 -0.8551 5.7853 12 6 2.3630 -1.5676 6.5692 13 6 2.8334 -2.4267 7.5426 14 6 4.2008 -2.5659 7.7419 15 8 4.6662 -3.4049 8.7024 16 6 6.0014 -3.5801 8.7674 17 1 6.6536 -3.0026 8.1290 18 6 6.5373 -4.5019 9.6538 19 7 5.7429 -5.2051 10.4318 20 14 8.3872 -4.7452 9.7434 21 1 9.0372 -3.4645 10.1211 22 1 8.7018 -5.7786 10.7624 23 1 8.8934 -5.1854 8.4186 24 6 5.0909 -1.8449 6.9569 25 6 4.6144 -0.9915 5.9813 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7516 -0.1582 -2.1370 30 1 3.1263 -0.7994 -1.2057 31 1 1.7499 -2.5460 -2.0782 32 1 2.2491 -1.6318 1.1524 33 1 2.8267 -1.5949 3.4140 34 1 1.7646 0.4708 5.0206 35 1 3.4365 0.9008 4.5870 36 1 1.2996 -1.4550 6.4171 37 1 2.1387 -2.9862 8.1516 38 1 6.1178 -5.8502 11.0516 39 1 6.1548 -1.9507 7.1097 40 1 5.3061 -0.4302 5.3708 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076084304.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:14 Heat of formation + Delta-G solvation = -114.259222 kcal Electronic energy + Delta-G solvation = -22464.783839 eV Core-core repulsion = 18858.102743 eV Total energy + Delta-G solvation = -3606.681096 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.20288 -40.70760 -38.71756 -38.18262 -35.80345 -35.45532 -34.27807 -32.23907 -31.81789 -30.64885 -27.65811 -27.33641 -26.11700 -23.64252 -22.70961 -22.04857 -21.54138 -19.90044 -19.58617 -18.81876 -18.31627 -17.44253 -16.69562 -16.41076 -16.17545 -16.03870 -15.91462 -15.52724 -15.35565 -15.12718 -14.88757 -14.51907 -14.36081 -14.24882 -13.80700 -13.65437 -13.39588 -13.15992 -13.00632 -12.52806 -12.43390 -12.37202 -12.21582 -12.14136 -11.93747 -11.34882 -11.20241 -10.89996 -10.79440 -10.32887 -9.82011 -9.72283 -9.01775 -8.47962 -6.16374 0.53168 0.58049 1.36049 1.45639 1.52015 1.85358 2.17632 2.19687 2.80836 3.13285 3.37214 3.48570 3.51069 3.88461 3.93756 4.03935 4.17032 4.17935 4.45580 4.47614 4.57222 4.61795 4.67702 4.74668 4.81266 4.87510 5.01360 5.04797 5.14531 5.27031 5.35502 5.49440 5.53873 5.62886 5.69131 5.76143 6.01504 6.05595 6.16641 6.94605 6.96666 7.12739 7.62178 7.75935 8.74684 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.025222 B = 0.002541 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.882291 B =11018.651720 C =11449.272059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.154 3.846 3 H 0.087 0.913 4 C 0.076 3.924 5 O -0.586 6.586 6 N -0.729 5.729 7 C 0.699 3.301 8 O -0.636 6.636 9 N -0.732 5.732 10 C 0.204 3.796 11 C -0.181 4.181 12 C -0.043 4.043 13 C -0.205 4.205 14 C 0.123 3.877 15 O -0.229 6.229 16 C -0.415 4.415 17 H 0.104 0.896 18 C -0.022 4.022 19 N -0.919 5.919 20 Si 1.018 2.982 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.256 1.256 24 C -0.243 4.243 25 C -0.044 4.044 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.034 0.966 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.400 0.600 32 H 0.409 0.591 33 H 0.406 0.594 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.146 0.854 37 H 0.115 0.885 38 H 0.273 0.727 39 H 0.121 0.879 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.833 7.346 -23.541 25.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.049 3.951 3 H 0.105 0.895 4 C -0.002 4.002 5 O -0.395 6.395 6 N -0.385 5.385 7 C 0.399 3.601 8 O -0.518 6.518 9 N -0.388 5.388 10 C 0.081 3.919 11 C -0.183 4.183 12 C -0.062 4.062 13 C -0.224 4.224 14 C 0.072 3.928 15 O -0.135 6.135 16 C -0.491 4.491 17 H 0.121 0.879 18 C -0.219 4.219 19 N -0.557 5.557 20 Si 0.837 3.163 21 H -0.182 1.182 22 H -0.198 1.198 23 H -0.180 1.180 24 C -0.262 4.262 25 C -0.063 4.063 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.250 0.750 32 H 0.245 0.755 33 H 0.242 0.758 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.163 0.837 37 H 0.133 0.867 38 H 0.082 0.918 39 H 0.139 0.861 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.482 8.335 -22.619 24.721 hybrid contribution 1.148 -1.342 0.161 1.773 sum -4.334 6.993 -22.458 23.918 Atomic orbital electron populations 1.22017 0.95205 1.02214 1.01713 1.21038 0.94692 0.96413 0.82946 0.89523 1.22405 0.97171 0.84375 0.96296 1.86441 1.73367 1.27452 1.52263 1.45111 1.70906 1.14284 1.08246 1.16160 0.78126 0.84704 0.81106 1.90876 1.59321 1.16231 1.85400 1.45264 1.70551 1.14389 1.08559 1.19706 1.00633 0.91921 0.79661 1.19496 0.93085 1.04123 1.01563 1.20872 1.00068 0.92770 0.92484 1.20441 0.91961 1.05869 1.04122 1.19990 0.94342 0.90155 0.88362 1.83950 1.25665 1.57151 1.46719 1.21803 0.79467 1.23669 1.24132 0.87876 1.26590 1.06029 0.94542 0.94783 1.70175 1.37999 1.24383 1.23157 0.84656 0.73616 0.78940 0.79086 1.18200 1.19761 1.18039 1.21243 0.99910 1.03448 1.01645 1.20940 0.95280 0.95062 0.94984 0.90254 0.92093 0.94679 0.89971 0.92077 0.74999 0.75534 0.75833 0.91379 0.91367 0.83674 0.86704 0.91789 0.86087 0.84268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.29 71.98 0.67 -2.00 16 2 C 0.15 2.54 2.98 44.99 0.13 2.67 16 3 H 0.09 1.64 7.58 -2.39 -0.02 1.62 16 4 C 0.08 0.71 6.79 71.98 0.49 1.20 16 5 O -0.59 -5.82 12.51 -148.98 -1.86 -7.69 16 6 N -0.73 -13.85 5.06 -457.83 -2.32 -16.16 16 7 C 0.70 17.91 8.53 179.06 1.53 19.44 16 8 O -0.64 -21.23 16.01 -4.00 -0.06 -21.30 16 9 N -0.73 -16.94 5.55 -482.29 -2.68 -19.62 16 10 C 0.20 5.21 5.80 85.63 0.50 5.71 16 11 C -0.18 -5.33 5.25 -19.83 -0.10 -5.43 16 12 C -0.04 -1.38 9.69 22.25 0.22 -1.16 16 13 C -0.20 -8.31 9.99 22.39 0.22 -8.09 16 14 C 0.12 5.86 6.65 22.58 0.15 6.01 16 15 O -0.23 -13.43 9.76 -22.74 -0.22 -13.65 16 16 C -0.41 -23.56 9.49 67.92 0.64 -22.92 16 17 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 18 C -0.02 -1.20 5.49 84.83 0.47 -0.74 16 19 N -0.92 -55.63 13.67 21.61 0.30 -55.33 16 20 Si 1.02 41.87 29.55 68.60 2.03 43.90 16 21 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 22 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 23 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 24 C -0.24 -10.03 9.17 22.39 0.21 -9.83 16 25 C -0.04 -1.42 9.69 22.25 0.22 -1.21 16 26 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.06 1.11 7.56 -2.39 -0.02 1.09 16 28 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.40 0.53 9.12 -74.06 -0.68 -0.14 16 32 H 0.41 6.32 8.40 -92.70 -0.78 5.55 16 33 H 0.41 8.13 8.48 -92.71 -0.79 7.35 16 34 H 0.07 1.76 8.08 -2.39 -0.02 1.74 16 35 H 0.07 1.76 8.08 -2.39 -0.02 1.74 16 36 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 37 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16 38 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.12 5.09 5.64 -2.91 -0.02 5.07 16 40 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -75.73 345.43 -0.64 -76.36 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: -1.14 Total: 29.83 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 5.33 Total: -16.34 kcal Atomic # 7 Polarization: -86.42 SS G_CDS: -4.70 Total: -91.12 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -2.15 Total: -42.64 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -75.73 -0.64 -76.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076084304.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.896 kcal (2) G-P(sol) polarization free energy of solvation -75.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds