Wall clock time and date at job start Tue Mar 31 2020 07:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99579 * 2 1 4 4 C 1.53000 * 109.46835 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47284 * 175.00253 * 4 3 2 6 6 C 1.52997 * 109.47298 * 55.00221 * 4 3 2 7 7 N 1.46502 * 109.47426 * 295.00029 * 4 3 2 8 8 C 1.34776 * 120.00402 * 205.00084 * 7 4 3 9 9 O 1.21595 * 119.99889 * 359.97438 * 8 7 4 10 10 N 1.34770 * 120.00195 * 179.97438 * 8 7 4 11 11 C 1.40027 * 119.99829 * 175.49221 * 10 8 7 12 12 C 1.38916 * 120.00196 * 214.85167 * 11 10 8 13 13 C 1.38007 * 120.00008 * 179.79356 * 12 11 10 14 14 C 1.38903 * 120.00173 * 0.46483 * 13 12 11 15 15 O 1.35777 * 119.99985 * 179.76732 * 14 13 12 16 16 C 1.34821 * 116.99890 * 185.35987 * 15 14 13 17 17 H 1.07994 * 119.99672 * 354.96698 * 16 15 14 18 18 C 1.38628 * 119.99709 * 174.96097 * 16 15 14 19 19 N 1.31576 * 120.00352 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99780 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46941 * 0.02562 * 20 18 16 22 22 H 1.48491 * 109.47187 * 120.00487 * 20 18 16 23 23 H 1.48500 * 109.46760 * 240.00453 * 20 18 16 24 24 C 1.38906 * 119.99922 * 359.78812 * 14 13 12 25 25 C 1.38006 * 120.00384 * 359.97438 * 24 14 13 26 26 H 1.08997 * 109.47411 * 299.99314 * 1 2 3 27 27 H 1.08994 * 109.47585 * 59.99733 * 1 2 3 28 28 H 1.09004 * 109.46848 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46844 * 60.00419 * 3 2 1 30 30 H 1.08997 * 109.47245 * 300.00156 * 3 2 1 31 31 H 1.08997 * 109.47504 * 179.97438 * 6 4 3 32 32 H 1.09001 * 109.47260 * 59.99873 * 6 4 3 33 33 H 1.09000 * 109.46979 * 300.00219 * 6 4 3 34 34 H 0.97001 * 119.99525 * 25.00066 * 7 4 3 35 35 H 0.97003 * 119.99910 * 355.49587 * 10 8 7 36 36 H 1.08005 * 119.99994 * 0.02624 * 12 11 10 37 37 H 1.08002 * 119.99672 * 180.23102 * 13 12 11 38 38 H 0.97000 * 119.99946 * 179.97438 * 19 18 16 39 39 H 1.08000 * 119.99698 * 179.97438 * 24 14 13 40 40 H 1.07996 * 120.00528 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 1 3.9783 2.1766 -0.0902 6 6 3.9780 0.3200 -1.1826 7 7 3.9767 0.5641 1.2509 8 6 5.2209 0.7941 1.7151 9 8 5.9773 1.5164 1.0950 10 7 5.6266 0.2235 2.8667 11 6 6.9480 0.3854 3.3006 12 6 7.5915 -0.6488 3.9685 13 6 8.8953 -0.4907 4.3925 14 6 9.5610 0.7060 4.1599 15 8 10.8421 0.8632 4.5812 16 6 11.3928 2.0837 4.4237 17 1 10.8477 2.8594 3.9065 18 6 12.6586 2.3430 4.9259 19 7 13.3229 1.3978 5.5557 20 14 13.4214 4.0343 4.7084 21 1 12.4770 4.9121 3.9716 22 1 13.7070 4.6236 6.0411 23 1 14.6862 3.9118 3.9400 24 6 8.9159 1.7421 3.4967 25 6 7.6137 1.5824 3.0684 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.6885 1.8464 0.8901 30 1 1.6884 1.8464 -0.8899 31 1 5.0646 0.2343 -1.1834 32 1 3.6497 0.7818 -2.1138 33 1 3.5350 -0.6719 -1.0931 34 1 3.3733 -0.0125 1.7454 35 1 5.0033 -0.2994 3.3948 36 1 7.0727 -1.5780 4.1527 37 1 9.3968 -1.2962 4.9084 38 1 14.2088 1.5792 5.9068 39 1 9.4333 2.6727 3.3163 40 1 7.1120 2.3880 2.5532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078232782.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:46 Heat of formation + Delta-G solvation = -70.010595 kcal Electronic energy + Delta-G solvation = -22783.038377 eV Core-core repulsion = 19178.276045 eV Total energy + Delta-G solvation = -3604.762332 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.35686 -38.92627 -38.33432 -36.65880 -35.14805 -33.90320 -32.15695 -31.00874 -30.11317 -27.72155 -27.58499 -26.03587 -25.20124 -22.69392 -21.95804 -20.90517 -20.41063 -18.56401 -17.85209 -17.35672 -16.97457 -16.48792 -16.12946 -15.52507 -15.16039 -14.89031 -14.45258 -14.30681 -13.97462 -13.55053 -13.49842 -13.42435 -12.92808 -12.78982 -12.55804 -12.43784 -12.15243 -11.70070 -11.55613 -11.44760 -11.43832 -11.20328 -10.99172 -10.67713 -10.37622 -10.14488 -9.88719 -9.61537 -9.14668 -9.09460 -8.62993 -8.12466 -6.84449 -6.38869 -3.96251 2.21876 2.32610 2.75476 3.16329 3.19012 3.24750 3.31062 3.43666 4.02706 4.29930 4.49399 4.64852 4.72970 4.87241 4.92801 5.01281 5.15639 5.19218 5.25888 5.32869 5.33832 5.57965 5.74637 5.80354 5.85473 6.17246 6.20966 6.27046 6.36971 6.48145 6.67901 6.77462 6.81616 7.04077 7.18324 7.28728 7.41559 7.51680 7.86882 8.06644 8.14206 8.75999 9.07335 9.77800 10.79378 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.034870 B = 0.002647 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.792583 B =10574.398883 C =11087.614764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.052 3.948 4 C 0.166 3.834 5 H 0.101 0.899 6 C -0.161 4.161 7 N -0.741 5.741 8 C 0.699 3.301 9 O -0.577 6.577 10 N -0.675 5.675 11 C 0.054 3.946 12 C -0.096 4.096 13 C -0.178 4.178 14 C 0.145 3.855 15 O -0.179 6.179 16 C -0.388 4.388 17 H 0.093 0.907 18 C 0.038 3.962 19 N -0.864 5.864 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.276 1.276 24 C -0.220 4.220 25 C -0.064 4.064 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.398 0.602 35 H 0.397 0.603 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.268 0.732 39 H 0.130 0.870 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.432 -1.851 -8.694 25.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C -0.025 4.025 4 C 0.061 3.939 5 H 0.119 0.881 6 C -0.219 4.219 7 N -0.398 5.398 8 C 0.400 3.600 9 O -0.454 6.454 10 N -0.322 5.322 11 C -0.039 4.039 12 C -0.116 4.116 13 C -0.198 4.198 14 C 0.091 3.909 15 O -0.083 6.083 16 C -0.465 4.465 17 H 0.110 0.890 18 C -0.166 4.166 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.239 4.239 25 C -0.085 4.085 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.232 0.768 35 H 0.231 0.769 36 H 0.132 0.868 37 H 0.139 0.861 38 H 0.078 0.922 39 H 0.147 0.853 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -23.251 -1.521 -9.087 25.009 hybrid contribution -0.519 0.517 0.325 0.801 sum -23.770 -1.004 -8.762 25.353 Atomic orbital electron populations 1.22750 0.80920 1.02865 1.00017 1.87898 1.19716 1.27556 1.95422 1.22907 0.93187 0.85226 1.01221 1.20841 0.90995 0.98349 0.83757 0.88137 1.22101 1.02368 1.00664 0.96781 1.45118 1.14162 1.54249 1.26234 1.15976 0.82034 0.81069 0.80914 1.90926 1.53497 1.41252 1.59700 1.42294 1.11504 1.55771 1.22674 1.17048 0.84187 0.95436 1.07189 1.20331 0.94087 0.96416 1.00795 1.19967 0.94204 0.97458 1.08143 1.19404 0.85612 0.93440 0.92461 1.83975 1.19985 1.33320 1.70991 1.21377 1.00268 0.87322 1.37509 0.89006 1.25275 0.95732 0.99583 0.96029 1.70059 1.12653 1.32535 1.34748 0.85652 0.79167 0.80343 0.78318 1.19072 1.20215 1.20197 1.21112 0.95764 1.00981 1.06091 1.20881 0.94408 0.95623 0.97541 0.94048 0.94030 0.89556 0.92512 0.91679 0.91788 0.92058 0.91685 0.76833 0.76893 0.86830 0.86114 0.92173 0.85269 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.98 9.55 -35.23 -0.34 -3.31 16 3 C 0.05 0.36 5.68 37.16 0.21 0.57 16 4 C 0.17 1.61 2.98 -67.93 -0.20 1.41 16 5 H 0.10 1.09 7.58 -51.93 -0.39 0.70 16 6 C -0.16 -1.62 9.29 37.16 0.35 -1.27 16 7 N -0.74 -7.96 5.06 -58.68 -0.30 -8.26 16 8 C 0.70 10.51 8.37 -86.93 -0.73 9.78 16 9 O -0.58 -11.06 13.44 5.28 0.07 -10.99 16 10 N -0.68 -9.67 5.35 -14.18 -0.08 -9.74 16 11 C 0.05 1.00 6.30 -83.61 -0.53 0.47 16 12 C -0.10 -1.72 9.96 -39.42 -0.39 -2.11 16 13 C -0.18 -3.79 9.98 -39.42 -0.39 -4.19 16 14 C 0.14 3.59 6.65 -39.09 -0.26 3.33 16 15 O -0.18 -5.21 9.76 -0.01 0.00 -5.21 16 16 C -0.39 -11.12 9.48 30.88 0.29 -10.82 16 17 H 0.09 2.46 5.20 -52.49 -0.27 2.19 16 18 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 19 N -0.86 -25.74 13.67 55.48 0.76 -24.98 16 20 Si 0.94 21.05 29.55 -169.99 -5.02 16.03 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 C -0.22 -5.10 9.16 -39.42 -0.36 -5.46 16 25 C -0.06 -1.34 8.69 -39.42 -0.34 -1.69 16 26 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.66 7.56 -51.93 -0.39 0.26 16 34 H 0.40 3.36 8.40 -40.82 -0.34 3.02 16 35 H 0.40 4.15 8.84 -40.82 -0.36 3.79 16 36 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 37 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 38 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.13 3.02 5.63 -52.49 -0.30 2.73 16 40 H 0.13 2.63 6.22 -52.49 -0.33 2.31 16 LS Contribution 341.59 15.07 5.15 5.15 Total: -1.00 -34.33 341.59 -6.42 -40.75 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.32 Total: 8.33 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -1.34 Total: -7.75 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.39 Total: -42.99 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.27 Total: -19.52 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.33 -6.42 -40.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078232782.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.257 kcal (2) G-P(sol) polarization free energy of solvation -34.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds