Wall clock time and date at job start Tue Mar 31 2020 07:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99579 * 2 1 4 4 C 1.53000 * 109.46835 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47284 * 175.00253 * 4 3 2 6 6 C 1.52997 * 109.47298 * 55.00221 * 4 3 2 7 7 N 1.46502 * 109.47426 * 295.00029 * 4 3 2 8 8 C 1.34776 * 120.00402 * 205.00084 * 7 4 3 9 9 O 1.21595 * 119.99889 * 359.97438 * 8 7 4 10 10 N 1.34770 * 120.00195 * 179.97438 * 8 7 4 11 11 C 1.40027 * 119.99829 * 175.49221 * 10 8 7 12 12 C 1.38916 * 120.00196 * 214.85167 * 11 10 8 13 13 C 1.38007 * 120.00008 * 179.79356 * 12 11 10 14 14 C 1.38903 * 120.00173 * 0.46483 * 13 12 11 15 15 O 1.35777 * 119.99985 * 179.76732 * 14 13 12 16 16 C 1.34821 * 116.99890 * 185.35987 * 15 14 13 17 17 H 1.07994 * 119.99672 * 354.96698 * 16 15 14 18 18 C 1.38628 * 119.99709 * 174.96097 * 16 15 14 19 19 N 1.31576 * 120.00352 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99780 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46941 * 0.02562 * 20 18 16 22 22 H 1.48491 * 109.47187 * 120.00487 * 20 18 16 23 23 H 1.48500 * 109.46760 * 240.00453 * 20 18 16 24 24 C 1.38906 * 119.99922 * 359.78812 * 14 13 12 25 25 C 1.38006 * 120.00384 * 359.97438 * 24 14 13 26 26 H 1.08997 * 109.47411 * 299.99314 * 1 2 3 27 27 H 1.08994 * 109.47585 * 59.99733 * 1 2 3 28 28 H 1.09004 * 109.46848 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46844 * 60.00419 * 3 2 1 30 30 H 1.08997 * 109.47245 * 300.00156 * 3 2 1 31 31 H 1.08997 * 109.47504 * 179.97438 * 6 4 3 32 32 H 1.09001 * 109.47260 * 59.99873 * 6 4 3 33 33 H 1.09000 * 109.46979 * 300.00219 * 6 4 3 34 34 H 0.97001 * 119.99525 * 25.00066 * 7 4 3 35 35 H 0.97003 * 119.99910 * 355.49587 * 10 8 7 36 36 H 1.08005 * 119.99994 * 0.02624 * 12 11 10 37 37 H 1.08002 * 119.99672 * 180.23102 * 13 12 11 38 38 H 0.97000 * 119.99946 * 179.97438 * 19 18 16 39 39 H 1.08000 * 119.99698 * 179.97438 * 24 14 13 40 40 H 1.07996 * 120.00528 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 1 3.9783 2.1766 -0.0902 6 6 3.9780 0.3200 -1.1826 7 7 3.9767 0.5641 1.2509 8 6 5.2209 0.7941 1.7151 9 8 5.9773 1.5164 1.0950 10 7 5.6266 0.2235 2.8667 11 6 6.9480 0.3854 3.3006 12 6 7.5915 -0.6488 3.9685 13 6 8.8953 -0.4907 4.3925 14 6 9.5610 0.7060 4.1599 15 8 10.8421 0.8632 4.5812 16 6 11.3928 2.0837 4.4237 17 1 10.8477 2.8594 3.9065 18 6 12.6586 2.3430 4.9259 19 7 13.3229 1.3978 5.5557 20 14 13.4214 4.0343 4.7084 21 1 12.4770 4.9121 3.9716 22 1 13.7070 4.6236 6.0411 23 1 14.6862 3.9118 3.9400 24 6 8.9159 1.7421 3.4967 25 6 7.6137 1.5824 3.0684 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.6885 1.8464 0.8901 30 1 1.6884 1.8464 -0.8899 31 1 5.0646 0.2343 -1.1834 32 1 3.6497 0.7818 -2.1138 33 1 3.5350 -0.6719 -1.0931 34 1 3.3733 -0.0125 1.7454 35 1 5.0033 -0.2994 3.3948 36 1 7.0727 -1.5780 4.1527 37 1 9.3968 -1.2962 4.9084 38 1 14.2088 1.5792 5.9068 39 1 9.4333 2.6727 3.3163 40 1 7.1120 2.3880 2.5532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078232782.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:46 Heat of formation + Delta-G solvation = -95.640849 kcal Electronic energy + Delta-G solvation = -22784.149788 eV Core-core repulsion = 19178.276045 eV Total energy + Delta-G solvation = -3605.873743 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.64789 -40.51028 -39.18936 -38.20098 -36.15677 -35.38265 -34.16259 -32.04580 -31.79891 -29.20429 -28.24461 -27.24351 -26.54542 -24.12824 -23.51519 -22.12677 -21.59157 -20.08450 -19.48439 -18.90612 -18.19633 -17.40659 -16.90688 -16.57754 -16.30354 -16.23950 -15.95471 -15.65507 -15.46842 -15.22431 -15.00406 -14.62080 -14.27272 -14.14401 -13.66267 -13.51821 -13.25468 -13.18004 -13.03983 -12.75363 -12.69709 -12.41486 -12.10534 -12.08125 -11.98007 -11.44017 -11.27839 -10.92557 -10.60004 -10.52547 -10.10739 -9.80703 -8.55407 -8.45463 -6.11982 0.55312 0.62354 1.35595 1.42939 1.53723 1.63312 2.12987 2.19082 2.82763 2.85543 3.17403 3.26887 3.54457 3.82011 4.09988 4.12326 4.15942 4.37149 4.50329 4.51054 4.54383 4.62865 4.67428 4.69755 4.75426 4.81632 4.94769 4.98932 5.09725 5.16522 5.34421 5.37869 5.45232 5.53740 5.65656 5.73343 6.02553 6.05832 6.21906 6.22610 6.99343 7.08103 7.57389 7.79510 8.77516 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.034870 B = 0.002647 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.792583 B =10574.398883 C =11087.614764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.060 3.940 4 C 0.160 3.840 5 H 0.088 0.912 6 C -0.154 4.154 7 N -0.720 5.720 8 C 0.697 3.303 9 O -0.620 6.620 10 N -0.663 5.663 11 C 0.082 3.918 12 C -0.079 4.079 13 C -0.179 4.179 14 C 0.104 3.896 15 O -0.228 6.228 16 C -0.412 4.412 17 H 0.097 0.903 18 C -0.022 4.022 19 N -0.919 5.919 20 Si 1.017 2.983 21 H -0.256 1.256 22 H -0.266 1.266 23 H -0.268 1.268 24 C -0.228 4.228 25 C -0.076 4.076 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.032 0.968 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.413 0.587 35 H 0.422 0.578 36 H 0.166 0.834 37 H 0.129 0.871 38 H 0.273 0.727 39 H 0.116 0.884 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.852 -2.122 -9.417 29.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C -0.017 4.017 4 C 0.055 3.945 5 H 0.106 0.894 6 C -0.213 4.213 7 N -0.376 5.376 8 C 0.397 3.603 9 O -0.500 6.500 10 N -0.313 5.313 11 C -0.013 4.013 12 C -0.100 4.100 13 C -0.199 4.199 14 C 0.054 3.946 15 O -0.135 6.135 16 C -0.488 4.488 17 H 0.114 0.886 18 C -0.220 4.220 19 N -0.557 5.557 20 Si 0.836 3.164 21 H -0.180 1.180 22 H -0.191 1.191 23 H -0.193 1.193 24 C -0.248 4.248 25 C -0.096 4.096 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.112 0.888 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.250 0.750 35 H 0.260 0.740 36 H 0.183 0.817 37 H 0.147 0.853 38 H 0.082 0.918 39 H 0.133 0.867 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -26.804 -1.836 -9.822 28.606 hybrid contribution 0.140 0.454 0.414 0.630 sum -26.664 -1.383 -9.408 28.309 Atomic orbital electron populations 1.22901 0.79461 1.03706 1.00891 1.87860 1.21275 1.27722 1.95623 1.22809 0.90772 0.85442 1.02647 1.20984 0.93148 0.97441 0.82887 0.89420 1.22031 1.00212 1.01076 0.97944 1.44987 1.12648 1.53618 1.26364 1.16160 0.82862 0.80530 0.80725 1.90916 1.55065 1.43126 1.60895 1.42098 1.10294 1.55919 1.22957 1.17159 0.85558 0.94159 1.04374 1.20740 0.92596 0.97941 0.98683 1.20304 0.95477 0.96351 1.07735 1.19925 0.85212 0.95408 0.94076 1.83936 1.22197 1.33770 1.73604 1.21799 1.01046 0.87806 1.38139 0.88599 1.26532 0.95861 1.04146 0.95421 1.70187 1.13430 1.35185 1.36903 0.84553 0.78226 0.74769 0.78805 1.17966 1.19055 1.19251 1.21093 0.96793 1.00349 1.06537 1.20940 0.93688 0.97028 0.97955 0.93181 0.93148 0.88829 0.91480 0.89881 0.94871 0.90264 0.91508 0.75025 0.74025 0.81687 0.85322 0.91827 0.86662 0.85608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.41 -4.90 9.55 -148.98 -1.42 -6.32 16 3 C 0.06 0.65 5.68 71.98 0.41 1.06 16 4 C 0.16 2.77 2.98 44.99 0.13 2.90 16 5 H 0.09 1.79 7.58 -2.39 -0.02 1.77 16 6 C -0.15 -2.85 9.29 71.98 0.67 -2.18 16 7 N -0.72 -13.50 5.06 -457.81 -2.32 -15.82 16 8 C 0.70 19.38 8.37 179.06 1.50 20.88 16 9 O -0.62 -23.29 13.44 -4.01 -0.05 -23.34 16 10 N -0.66 -16.77 5.35 -317.04 -1.69 -18.47 16 11 C 0.08 2.82 6.30 38.16 0.24 3.06 16 12 C -0.08 -2.61 9.96 22.38 0.22 -2.39 16 13 C -0.18 -7.55 9.98 22.37 0.22 -7.32 16 14 C 0.10 5.38 6.65 22.59 0.15 5.53 16 15 O -0.23 -14.06 9.76 -22.95 -0.22 -14.28 16 16 C -0.41 -24.82 9.48 67.91 0.64 -24.18 16 17 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 18 C -0.02 -1.29 5.49 84.82 0.47 -0.83 16 19 N -0.92 -57.20 13.67 21.61 0.30 -56.90 16 20 Si 1.02 44.41 29.55 68.60 2.03 46.44 16 21 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 24 C -0.23 -10.96 9.16 22.37 0.20 -10.76 16 25 C -0.08 -3.15 8.69 22.38 0.19 -2.96 16 26 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.21 7.56 -2.39 -0.02 1.19 16 34 H 0.41 5.44 8.40 -92.71 -0.78 4.66 16 35 H 0.42 6.82 8.84 -92.71 -0.82 6.01 16 36 H 0.17 3.79 8.06 -2.91 -0.02 3.77 16 37 H 0.13 5.16 8.06 -2.91 -0.02 5.13 16 38 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.12 5.73 5.63 -2.91 -0.02 5.72 16 40 H 0.13 5.27 6.22 -2.91 -0.02 5.25 16 Total: -1.00 -79.74 341.59 2.40 -77.35 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -0.52 Total: 27.10 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 6.30 Total: -15.75 kcal Atomic # 7 Polarization: -87.47 SS G_CDS: -3.72 Total: -91.19 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -1.70 Total: -43.95 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -79.74 2.40 -77.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078232782.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.295 kcal (2) G-P(sol) polarization free energy of solvation -79.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds