Wall clock time and date at job start Tue Mar 31 2020 08:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46908 * 109.47056 * 2 1 4 4 C 1.46896 * 110.99968 * 200.25436 * 3 2 1 5 5 C 1.50701 * 109.47318 * 66.04350 * 4 3 2 6 6 H 1.08003 * 119.99498 * 0.02562 * 5 4 3 7 7 C 1.37868 * 120.00216 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00077 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00266 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46939 * 90.00513 * 9 7 5 11 11 H 1.48493 * 109.47351 * 210.00495 * 9 7 5 12 12 H 1.48498 * 109.46893 * 330.00584 * 9 7 5 13 13 C 1.46899 * 110.99786 * 76.30006 * 3 2 1 14 14 C 1.52998 * 109.47119 * 200.39266 * 13 3 2 15 15 O 1.42897 * 109.47061 * 63.79665 * 14 13 3 16 16 C 1.35899 * 117.00178 * 176.13482 * 15 14 13 17 17 C 1.38756 * 120.05334 * 359.72473 * 16 15 14 18 18 C 1.38130 * 119.94205 * 179.79280 * 17 16 15 19 19 C 1.38283 * 120.05392 * 0.48202 * 18 17 16 20 20 C 1.38241 * 120.11393 * 359.74593 * 19 18 17 21 21 N 1.48000 * 119.97200 * 180.02562 * 20 19 18 22 22 O 1.21799 * 120.00102 * 180.02562 * 21 20 19 23 23 O 1.21803 * 120.00467 * 0.02562 * 21 20 19 24 24 C 1.38165 * 120.05533 * 0.02562 * 20 19 18 25 25 H 1.09001 * 109.46773 * 302.44928 * 1 2 3 26 26 H 1.09003 * 109.47003 * 62.44878 * 1 2 3 27 27 H 1.08998 * 109.46879 * 182.44752 * 1 2 3 28 28 H 1.08998 * 109.47194 * 240.00380 * 2 1 3 29 29 H 1.08998 * 109.47214 * 119.99948 * 2 1 3 30 30 H 1.09001 * 109.47252 * 186.04767 * 4 3 2 31 31 H 1.09005 * 109.47128 * 306.04745 * 4 3 2 32 32 H 0.97005 * 120.00048 * 179.97438 * 8 7 5 33 33 H 1.09006 * 109.46893 * 80.39306 * 13 3 2 34 34 H 1.08999 * 109.47496 * 320.39574 * 13 3 2 35 35 H 1.09003 * 109.47353 * 303.79533 * 14 13 3 36 36 H 1.09001 * 109.47124 * 183.79550 * 14 13 3 37 37 H 1.07999 * 120.02543 * 359.97438 * 17 16 15 38 38 H 1.07997 * 119.96806 * 180.23122 * 18 17 16 39 39 H 1.08001 * 119.94601 * 179.77195 * 19 18 17 40 40 H 1.08003 * 120.02791 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.4082 1.4525 -0.4748 5 6 3.4626 1.0530 -1.9268 6 1 2.5562 0.7770 -2.4452 7 6 4.6692 1.0408 -2.5937 8 7 5.7728 1.3774 -1.9626 9 14 4.7366 0.5463 -4.3939 10 1 4.5612 1.7505 -5.2449 11 1 6.0510 -0.0795 -4.6864 12 1 3.6509 -0.4253 -4.6812 13 6 1.8889 1.9896 1.3324 14 6 1.9120 3.5141 1.2052 15 8 0.7760 3.9467 0.4542 16 6 0.6012 5.2874 0.3168 17 6 1.5016 6.1687 0.8981 18 6 1.3242 7.5309 0.7534 19 6 0.2447 8.0166 0.0385 20 6 -0.6564 7.1407 -0.5376 21 7 -1.8102 7.6640 -1.3026 22 8 -2.6047 6.8928 -1.8100 23 8 -1.9654 8.8659 -1.4248 24 6 -0.4807 5.7772 -0.3998 25 1 -0.3633 0.5514 0.8672 26 1 -0.3633 0.4754 -0.9112 27 1 -0.3633 -1.0267 0.0439 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.7811 2.4708 -0.3638 31 1 4.0263 0.7733 0.1123 32 1 6.6218 1.3685 -2.4317 33 1 2.7177 1.6649 1.9617 34 1 0.9468 1.6768 1.7825 35 1 2.8242 3.8224 0.6943 36 1 1.8829 3.9621 2.1985 37 1 2.3421 5.7898 1.4606 38 1 2.0268 8.2172 1.2025 39 1 0.1056 9.0821 -0.0704 40 1 -1.1848 5.0933 -0.8504 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081039469.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:39 Heat of formation + Delta-G solvation = -10.994820 kcal Electronic energy + Delta-G solvation = -23268.136379 eV Core-core repulsion = 19665.933164 eV Total energy + Delta-G solvation = -3602.203216 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.22477 -40.34052 -38.00971 -36.73299 -36.58641 -32.74618 -32.08509 -31.43724 -30.19093 -28.91992 -26.80840 -26.04970 -23.33053 -23.01209 -22.51128 -21.75339 -20.00672 -19.37206 -18.71000 -17.57860 -17.21368 -16.64936 -16.49314 -16.10568 -15.83176 -14.99069 -14.40217 -14.28741 -14.17655 -13.68459 -13.40092 -13.09255 -12.59577 -12.52171 -12.16943 -12.00600 -11.88959 -11.60449 -11.42688 -11.24027 -11.17964 -11.11175 -11.03561 -10.88022 -10.73517 -10.48712 -10.16478 -9.81633 -9.78261 -9.27435 -8.60591 -8.51084 -7.35676 -6.11447 -4.12243 -0.25420 0.89264 1.28402 1.30369 3.08717 3.18191 3.27768 3.34121 3.37840 4.27194 4.35476 4.51489 4.56086 4.64039 4.69690 4.83370 5.10672 5.24500 5.24682 5.33347 5.46915 5.58153 5.69887 5.76513 5.77813 5.82297 5.94693 5.97367 6.00015 6.09334 6.32670 6.35528 6.67212 6.75343 7.12402 7.20760 7.25457 7.59453 7.72863 7.97190 8.09766 8.44272 8.95809 9.52664 10.99451 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.013726 B = 0.003812 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.477349 B = 7343.612686 C = 7826.192878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.057 3.943 3 N -0.531 5.531 4 C 0.191 3.809 5 C -0.507 4.507 6 H 0.064 0.936 7 C 0.056 3.944 8 N -0.900 5.900 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.053 3.947 14 C 0.065 3.935 15 O -0.278 6.278 16 C 0.152 3.848 17 C -0.164 4.164 18 C -0.075 4.075 19 C -0.107 4.107 20 C -0.006 4.006 21 N 0.030 4.970 22 O -0.156 6.156 23 O -0.163 6.163 24 C -0.096 4.096 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.017 0.983 30 H 0.028 0.972 31 H -0.009 1.009 32 H 0.261 0.739 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.406 8.963 9.584 15.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.071 4.071 3 N -0.256 5.256 4 C 0.066 3.934 5 C -0.545 4.545 6 H 0.083 0.917 7 C -0.145 4.145 8 N -0.540 5.540 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.197 1.197 13 C -0.076 4.076 14 C -0.010 4.010 15 O -0.190 6.190 16 C 0.103 3.897 17 C -0.183 4.183 18 C -0.094 4.094 19 C -0.126 4.126 20 C -0.088 4.088 21 N 0.550 4.450 22 O -0.373 6.373 23 O -0.378 6.378 24 C -0.116 4.116 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.009 0.991 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.168 0.832 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.047 8.810 9.529 15.270 hybrid contribution 0.703 -0.447 -0.525 0.985 sum -7.344 8.362 9.004 14.316 Atomic orbital electron populations 1.21775 0.96425 0.99902 1.01860 1.21967 0.94390 0.89815 1.00935 1.62107 1.25656 1.17402 1.20423 1.19789 0.81462 0.96530 0.95627 1.21146 0.93413 1.44776 0.95171 0.91737 1.24972 0.95572 0.95492 0.98474 1.69946 0.98467 1.48885 1.36672 0.86511 0.77303 0.78808 0.84918 1.20621 1.21290 1.19747 1.22085 1.01106 0.91338 0.93098 1.23138 0.87478 0.96682 0.93725 1.86292 1.46673 1.16401 1.69608 1.18728 0.92683 0.84861 0.93383 1.21824 1.00508 0.94021 1.01925 1.20948 0.96351 0.95071 0.97021 1.20874 0.93537 1.00781 0.97408 1.20685 0.90964 0.93940 1.03253 1.43576 1.01495 1.00777 0.99199 1.94562 1.39472 1.55162 1.48084 1.94516 1.80258 0.98343 1.64684 1.20093 0.98792 0.92961 0.99736 0.93688 0.92169 0.93547 0.89476 0.96440 0.95446 0.99141 0.92908 0.93041 0.90815 0.90694 0.92248 0.83514 0.83464 0.83159 0.82163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 10.05 37.16 0.37 -1.81 16 2 C 0.06 1.05 5.50 -3.82 -0.02 1.03 16 3 N -0.53 -10.60 4.28 -236.06 -1.01 -11.61 16 4 C 0.19 4.65 4.54 -4.98 -0.02 4.63 16 5 C -0.51 -13.74 8.23 -34.44 -0.28 -14.02 16 6 H 0.06 1.76 7.32 -52.48 -0.38 1.38 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -25.86 13.29 55.43 0.74 -25.13 16 9 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.05 0.82 5.20 -3.83 -0.02 0.80 16 14 C 0.06 0.91 4.94 37.16 0.18 1.09 16 15 O -0.28 -4.26 10.07 -19.42 -0.20 -4.45 16 16 C 0.15 2.02 6.69 -39.22 -0.26 1.76 16 17 C -0.16 -1.74 9.04 -39.43 -0.36 -2.10 16 18 C -0.08 -0.68 10.04 -39.60 -0.40 -1.07 16 19 C -0.11 -1.11 9.55 -39.56 -0.38 -1.49 16 20 C -0.01 -0.07 6.85 -79.98 -0.55 -0.62 16 21 N 0.03 0.43 4.45 33.95 0.15 0.58 16 22 O -0.16 -2.42 18.45 -29.46 -0.54 -2.96 16 23 O -0.16 -2.36 18.44 -29.46 -0.54 -2.90 16 24 C -0.10 -1.29 9.49 -39.43 -0.37 -1.67 16 25 H 0.04 0.64 6.74 -51.93 -0.35 0.29 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.09 1.80 6.58 -51.93 -0.34 1.46 16 29 H 0.02 0.30 7.99 -51.93 -0.41 -0.11 16 30 H 0.03 0.70 6.62 -51.93 -0.34 0.36 16 31 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.05 0.78 7.99 -51.93 -0.41 0.36 16 34 H 0.07 1.04 6.50 -51.93 -0.34 0.70 16 35 H 0.07 1.16 6.47 -51.93 -0.34 0.82 16 36 H 0.06 0.61 7.42 -51.93 -0.39 0.23 16 37 H 0.15 1.31 6.30 -52.49 -0.33 0.98 16 38 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.15 1.29 7.60 -52.49 -0.40 0.89 16 40 H 0.16 2.16 7.61 -52.48 -0.40 1.76 16 LS Contribution 341.34 15.07 5.14 5.14 Total: -1.00 -30.45 341.34 -8.75 -39.20 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -5.26 Total: -2.16 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -2.20 Total: -12.01 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.12 Total: -36.16 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -1.28 Total: -10.32 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.45 -8.75 -39.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039469.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.203 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds