Wall clock time and date at job start Tue Mar 31 2020 08:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46908 * 109.47056 * 2 1 4 4 C 1.46896 * 110.99968 * 200.25436 * 3 2 1 5 5 C 1.50701 * 109.47318 * 66.04350 * 4 3 2 6 6 H 1.08003 * 119.99498 * 0.02562 * 5 4 3 7 7 C 1.37868 * 120.00216 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00077 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00266 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46939 * 90.00513 * 9 7 5 11 11 H 1.48493 * 109.47351 * 210.00495 * 9 7 5 12 12 H 1.48498 * 109.46893 * 330.00584 * 9 7 5 13 13 C 1.46899 * 110.99786 * 76.30006 * 3 2 1 14 14 C 1.52998 * 109.47119 * 200.39266 * 13 3 2 15 15 O 1.42897 * 109.47061 * 63.79665 * 14 13 3 16 16 C 1.35899 * 117.00178 * 176.13482 * 15 14 13 17 17 C 1.38756 * 120.05334 * 359.72473 * 16 15 14 18 18 C 1.38130 * 119.94205 * 179.79280 * 17 16 15 19 19 C 1.38283 * 120.05392 * 0.48202 * 18 17 16 20 20 C 1.38241 * 120.11393 * 359.74593 * 19 18 17 21 21 N 1.48000 * 119.97200 * 180.02562 * 20 19 18 22 22 O 1.21799 * 120.00102 * 180.02562 * 21 20 19 23 23 O 1.21803 * 120.00467 * 0.02562 * 21 20 19 24 24 C 1.38165 * 120.05533 * 0.02562 * 20 19 18 25 25 H 1.09001 * 109.46773 * 302.44928 * 1 2 3 26 26 H 1.09003 * 109.47003 * 62.44878 * 1 2 3 27 27 H 1.08998 * 109.46879 * 182.44752 * 1 2 3 28 28 H 1.08998 * 109.47194 * 240.00380 * 2 1 3 29 29 H 1.08998 * 109.47214 * 119.99948 * 2 1 3 30 30 H 1.09001 * 109.47252 * 186.04767 * 4 3 2 31 31 H 1.09005 * 109.47128 * 306.04745 * 4 3 2 32 32 H 0.97005 * 120.00048 * 179.97438 * 8 7 5 33 33 H 1.09006 * 109.46893 * 80.39306 * 13 3 2 34 34 H 1.08999 * 109.47496 * 320.39574 * 13 3 2 35 35 H 1.09003 * 109.47353 * 303.79533 * 14 13 3 36 36 H 1.09001 * 109.47124 * 183.79550 * 14 13 3 37 37 H 1.07999 * 120.02543 * 359.97438 * 17 16 15 38 38 H 1.07997 * 119.96806 * 180.23122 * 18 17 16 39 39 H 1.08001 * 119.94601 * 179.77195 * 19 18 17 40 40 H 1.08003 * 120.02791 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.4082 1.4525 -0.4748 5 6 3.4626 1.0530 -1.9268 6 1 2.5562 0.7770 -2.4452 7 6 4.6692 1.0408 -2.5937 8 7 5.7728 1.3774 -1.9626 9 14 4.7366 0.5463 -4.3939 10 1 4.5612 1.7505 -5.2449 11 1 6.0510 -0.0795 -4.6864 12 1 3.6509 -0.4253 -4.6812 13 6 1.8889 1.9896 1.3324 14 6 1.9120 3.5141 1.2052 15 8 0.7760 3.9467 0.4542 16 6 0.6012 5.2874 0.3168 17 6 1.5016 6.1687 0.8981 18 6 1.3242 7.5309 0.7534 19 6 0.2447 8.0166 0.0385 20 6 -0.6564 7.1407 -0.5376 21 7 -1.8102 7.6640 -1.3026 22 8 -2.6047 6.8928 -1.8100 23 8 -1.9654 8.8659 -1.4248 24 6 -0.4807 5.7772 -0.3998 25 1 -0.3633 0.5514 0.8672 26 1 -0.3633 0.4754 -0.9112 27 1 -0.3633 -1.0267 0.0439 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.7811 2.4708 -0.3638 31 1 4.0263 0.7733 0.1123 32 1 6.6218 1.3685 -2.4317 33 1 2.7177 1.6649 1.9617 34 1 0.9468 1.6768 1.7825 35 1 2.8242 3.8224 0.6943 36 1 1.8829 3.9621 2.1985 37 1 2.3421 5.7898 1.4606 38 1 2.0268 8.2172 1.2025 39 1 0.1056 9.0821 -0.0704 40 1 -1.1848 5.0933 -0.8504 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081039469.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:38 Heat of formation + Delta-G solvation = -28.889798 kcal Electronic energy + Delta-G solvation = -23268.912364 eV Core-core repulsion = 19665.933164 eV Total energy + Delta-G solvation = -3602.979200 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.31222 -41.32715 -39.17513 -38.08111 -37.72472 -34.79340 -32.99334 -32.59138 -31.43486 -30.39025 -28.06256 -27.53823 -24.70370 -24.12425 -23.93826 -22.89435 -21.39654 -20.48892 -19.81204 -18.68174 -18.63050 -18.16094 -17.49365 -17.16823 -17.03091 -16.71503 -15.79142 -15.67741 -15.23699 -15.11617 -14.48545 -14.33042 -14.08681 -13.82124 -13.51837 -13.38506 -12.99557 -12.87469 -12.74292 -12.64067 -12.61710 -12.46403 -12.34538 -12.32746 -12.14591 -12.05348 -11.75344 -11.44281 -11.20555 -10.65012 -10.61922 -9.56314 -8.96404 -8.22785 -6.30412 -1.29103 0.02501 0.26510 0.28660 1.38081 1.39157 1.49645 2.07478 2.29172 2.38005 3.10023 3.24618 3.44881 3.63620 3.69144 3.79870 3.96280 4.05523 4.11715 4.28018 4.34625 4.40370 4.59481 4.62091 4.70820 4.72899 4.77619 4.91928 5.01093 5.04427 5.04607 5.11667 5.18995 5.33850 5.37556 5.47650 5.65075 6.06383 6.23894 6.36942 6.45106 6.67630 6.85877 7.38930 8.87709 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.013726 B = 0.003812 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.477349 B = 7343.612686 C = 7826.192878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 N -0.543 5.543 4 C 0.208 3.792 5 C -0.521 4.521 6 H 0.056 0.944 7 C 0.008 3.992 8 N -0.931 5.931 9 Si 0.958 3.042 10 H -0.277 1.277 11 H -0.280 1.280 12 H -0.267 1.267 13 C 0.048 3.952 14 C 0.068 3.932 15 O -0.304 6.304 16 C 0.131 3.869 17 C -0.155 4.155 18 C -0.060 4.060 19 C -0.095 4.095 20 C -0.021 4.021 21 N 0.030 4.970 22 O -0.201 6.201 23 O -0.148 6.148 24 C -0.115 4.115 25 H 0.059 0.941 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.028 0.972 30 H 0.011 0.989 31 H -0.035 1.035 32 H 0.264 0.736 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.103 0.897 37 H 0.168 0.832 38 H 0.193 0.807 39 H 0.174 0.826 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.118 10.249 10.802 16.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.073 4.073 3 N -0.267 5.267 4 C 0.082 3.918 5 C -0.560 4.560 6 H 0.074 0.926 7 C -0.191 4.191 8 N -0.571 5.571 9 Si 0.783 3.217 10 H -0.203 1.203 11 H -0.205 1.205 12 H -0.192 1.192 13 C -0.080 4.080 14 C -0.007 4.007 15 O -0.217 6.217 16 C 0.083 3.917 17 C -0.174 4.174 18 C -0.078 4.078 19 C -0.115 4.115 20 C -0.104 4.104 21 N 0.547 4.453 22 O -0.408 6.408 23 O -0.370 6.370 24 C -0.134 4.134 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.030 0.970 31 H -0.018 1.018 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.185 0.815 38 H 0.210 0.790 39 H 0.191 0.809 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.822 10.024 10.731 16.638 hybrid contribution 0.652 -0.743 -0.804 1.274 sum -7.170 9.282 9.927 15.365 Atomic orbital electron populations 1.21667 0.93795 1.01546 1.01720 1.21985 0.96434 0.88930 0.99938 1.62043 1.22557 1.18553 1.23593 1.19407 0.83683 0.94561 0.94153 1.21455 0.93191 1.44595 0.96718 0.92617 1.25751 0.95270 0.95489 1.02553 1.70044 0.98941 1.49856 1.38281 0.85549 0.77571 0.78555 0.79980 1.20312 1.20540 1.19175 1.22242 1.02369 0.92462 0.90894 1.23115 0.86396 0.95617 0.95577 1.86230 1.47092 1.17841 1.70554 1.18876 0.93564 0.84570 0.94673 1.22167 0.99954 0.94513 1.00767 1.21455 0.95988 0.94917 0.95461 1.21315 0.92683 1.01582 0.95880 1.20845 0.91091 0.94209 1.04297 1.43840 1.01812 1.00630 0.99059 1.94567 1.40882 1.55293 1.50078 1.94473 1.80100 0.98504 1.63919 1.20042 0.99311 0.93294 1.00793 0.92169 0.93732 0.91164 0.92572 0.95332 0.97049 1.01781 0.92719 0.92327 0.88748 0.92718 0.87875 0.81450 0.79019 0.80852 0.83693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.84 10.05 71.98 0.72 -3.12 16 2 C 0.06 2.03 5.50 86.30 0.48 2.50 16 3 N -0.54 -21.88 4.28 -900.77 -3.85 -25.73 16 4 C 0.21 10.44 4.54 85.56 0.39 10.83 16 5 C -0.52 -28.99 8.23 25.60 0.21 -28.78 16 6 H 0.06 3.13 7.32 -2.91 -0.02 3.10 16 7 C 0.01 0.43 5.46 84.65 0.46 0.89 16 8 N -0.93 -54.26 13.29 21.44 0.28 -53.97 16 9 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 13 C 0.05 1.46 5.20 86.30 0.45 1.91 16 14 C 0.07 1.80 4.94 71.98 0.36 2.15 16 15 O -0.30 -9.19 10.07 -92.41 -0.93 -10.12 16 16 C 0.13 3.37 6.69 22.51 0.15 3.52 16 17 C -0.16 -2.86 9.04 22.37 0.20 -2.65 16 18 C -0.06 -0.83 10.04 22.25 0.22 -0.61 16 19 C -0.10 -1.69 9.55 22.28 0.21 -1.48 16 20 C -0.02 -0.54 6.85 36.36 0.25 -0.29 16 21 N 0.03 0.89 4.45 -46.51 -0.21 0.68 16 22 O -0.20 -6.57 18.45 18.89 0.35 -6.22 16 23 O -0.15 -4.16 18.44 18.88 0.35 -3.81 16 24 C -0.11 -3.13 9.49 22.36 0.21 -2.92 16 25 H 0.06 1.59 6.74 -2.39 -0.02 1.58 16 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 2.39 6.58 -2.39 -0.02 2.37 16 29 H 0.03 0.97 7.99 -2.39 -0.02 0.95 16 30 H 0.01 0.61 6.62 -2.39 -0.02 0.59 16 31 H -0.04 -1.92 8.12 -2.38 -0.02 -1.94 16 32 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 33 H 0.06 1.70 7.99 -2.38 -0.02 1.68 16 34 H 0.09 2.46 6.50 -2.39 -0.02 2.44 16 35 H 0.05 1.66 6.47 -2.39 -0.02 1.65 16 36 H 0.10 1.80 7.42 -2.39 -0.02 1.78 16 37 H 0.17 2.36 6.30 -2.91 -0.02 2.34 16 38 H 0.19 1.01 8.06 -2.91 -0.02 0.98 16 39 H 0.17 2.29 7.60 -2.91 -0.02 2.26 16 40 H 0.15 4.25 7.61 -2.91 -0.02 4.22 16 Total: -1.00 -68.44 341.34 3.38 -65.06 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 1.05 Total: 6.00 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: 4.32 Total: -18.04 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -3.78 Total: -79.02 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.23 Total: -20.15 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -68.44 3.38 -65.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039469.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.167 kcal (2) G-P(sol) polarization free energy of solvation -68.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds