Wall clock time and date at job start Tue Mar 31 2020 08:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46904 * 109.46786 * 2 1 4 4 C 1.46894 * 111.00318 * 297.32279 * 3 2 1 5 5 C 1.50704 * 109.46866 * 292.71370 * 4 3 2 6 6 H 1.08000 * 119.99643 * 355.02399 * 5 4 3 7 7 C 1.37878 * 120.00124 * 175.02620 * 5 4 3 8 8 N 1.31517 * 119.99752 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00138 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46793 * 89.99788 * 9 7 5 11 11 H 1.48500 * 109.46997 * 209.99925 * 9 7 5 12 12 H 1.48500 * 109.47069 * 329.99882 * 9 7 5 13 13 C 1.46899 * 110.99705 * 61.27371 * 3 2 1 14 14 C 1.53010 * 109.47403 * 66.04538 * 13 3 2 15 15 O 1.42898 * 109.47086 * 64.99384 * 14 13 3 16 16 C 1.35895 * 116.99859 * 180.02562 * 15 14 13 17 17 C 1.38732 * 120.05473 * 180.02562 * 16 15 14 18 18 C 1.38143 * 119.94461 * 180.02562 * 17 16 15 19 19 C 1.38257 * 120.05766 * 0.02562 * 18 17 16 20 20 N 1.48002 * 119.94902 * 179.97438 * 19 18 17 21 21 O 1.21803 * 119.99725 * 0.02562 * 20 19 18 22 22 O 1.21801 * 120.00423 * 179.72781 * 20 19 18 23 23 C 1.38266 * 120.11124 * 0.25893 * 19 18 17 24 24 C 1.38153 * 120.05463 * 359.44894 * 23 19 18 25 25 H 1.08996 * 109.47056 * 299.42637 * 1 2 3 26 26 H 1.09005 * 109.46844 * 59.42972 * 1 2 3 27 27 H 1.09003 * 109.46891 * 179.42617 * 1 2 3 28 28 H 1.09000 * 109.47112 * 240.00656 * 2 1 3 29 29 H 1.08997 * 109.47120 * 120.00327 * 2 1 3 30 30 H 1.08997 * 109.47298 * 52.71544 * 4 3 2 31 31 H 1.09000 * 109.47362 * 172.71946 * 4 3 2 32 32 H 0.97002 * 119.99943 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.47689 * 306.04504 * 13 3 2 34 34 H 1.09000 * 109.47446 * 186.03919 * 13 3 2 35 35 H 1.09000 * 109.46364 * 304.99830 * 14 13 3 36 36 H 1.08999 * 109.47338 * 185.00191 * 14 13 3 37 37 H 1.08007 * 120.03033 * 359.97438 * 17 16 15 38 38 H 1.08004 * 119.96922 * 180.02562 * 18 17 16 39 39 H 1.08003 * 119.97814 * 179.71978 * 23 19 18 40 40 H 1.08001 * 120.02885 * 180.25304 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.6017 2.0912 -1.2183 5 6 2.3008 1.4918 -2.4113 6 1 3.0465 0.7234 -2.2702 7 6 1.9885 1.9244 -3.6826 8 7 1.0802 2.8598 -3.8543 9 14 2.8546 1.1809 -5.1613 10 1 2.0893 0.0028 -5.6425 11 1 2.9399 2.1923 -6.2453 12 1 4.2233 0.7564 -4.7716 13 6 1.5736 2.1010 1.2027 14 6 2.2314 1.4824 2.4379 15 8 3.6443 1.6872 2.3782 16 6 4.3832 1.1946 3.4068 17 6 5.7608 1.3582 3.4136 18 6 6.5097 0.8560 4.4601 19 6 5.8876 0.1904 5.5000 20 7 6.6923 -0.3471 6.6198 21 8 7.9017 -0.2025 6.6249 22 8 6.1447 -0.9293 7.5389 23 6 4.5153 0.0209 5.4928 24 6 3.7612 0.5265 4.4515 25 1 -0.3633 0.5049 0.8950 26 1 -0.3633 0.5227 -0.8849 27 1 -0.3633 -1.0276 -0.0103 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 0.5232 1.9942 -1.3427 31 1 1.8645 3.1458 -1.1354 32 1 0.8607 3.1645 -4.7487 33 1 0.4899 2.0234 1.2909 34 1 1.8578 3.1506 1.1271 35 1 2.0200 0.4134 2.4650 36 1 1.8334 1.9543 3.3363 37 1 6.2475 1.8769 2.6008 38 1 7.5822 0.9835 4.4660 39 1 4.0320 -0.5033 6.3040 40 1 2.6889 0.3974 4.4483 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081514116.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:41 Heat of formation + Delta-G solvation = -9.301594 kcal Electronic energy + Delta-G solvation = -22962.518901 eV Core-core repulsion = 19360.389109 eV Total energy + Delta-G solvation = -3602.129792 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.25430 -40.55587 -38.26549 -37.03123 -36.64552 -32.79668 -31.90018 -31.47102 -30.21450 -29.18292 -26.44071 -25.92529 -24.15702 -23.35921 -22.57748 -21.83356 -19.53392 -19.38175 -18.72075 -18.46642 -17.61184 -16.44784 -16.35581 -16.08752 -15.27106 -15.15850 -14.84784 -14.29373 -14.16991 -13.99289 -13.62506 -13.22842 -12.99240 -12.84573 -12.01573 -11.90716 -11.84007 -11.66263 -11.45287 -11.33156 -11.28947 -11.24714 -11.20994 -10.82113 -10.72590 -10.57722 -10.19440 -9.83769 -9.76502 -9.29289 -8.92181 -8.50673 -7.34026 -6.09938 -4.11045 -0.23302 0.65327 1.24979 1.33247 2.84946 3.04449 3.26533 3.33522 3.37683 4.08838 4.18947 4.34436 4.40730 4.64008 4.65330 4.88861 4.92028 5.11130 5.18402 5.25877 5.30623 5.37874 5.50043 5.56684 5.68259 5.70356 5.81321 5.90678 5.99793 6.04042 6.23676 6.29178 6.54421 6.73480 7.00183 7.18481 7.29672 7.55481 7.71645 7.97863 8.06190 8.43655 8.96773 9.53504 11.00700 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.024267 B = 0.002881 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.547960 B = 9715.985326 C =10317.989837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.057 3.943 3 N -0.529 5.529 4 C 0.189 3.811 5 C -0.505 4.505 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.047 3.953 14 C 0.058 3.942 15 O -0.272 6.272 16 C 0.198 3.802 17 C -0.154 4.154 18 C -0.014 4.014 19 C -0.098 4.098 20 N 0.040 4.960 21 O -0.172 6.172 22 O -0.175 6.175 23 C -0.010 4.010 24 C -0.218 4.218 25 H 0.043 0.957 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.049 0.951 30 H 0.004 0.996 31 H 0.026 0.974 32 H 0.261 0.739 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.018 -3.553 16.715 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.072 4.072 3 N -0.253 5.253 4 C 0.064 3.936 5 C -0.544 4.544 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.197 1.197 13 C -0.082 4.082 14 C -0.017 4.017 15 O -0.181 6.181 16 C 0.148 3.852 17 C -0.173 4.173 18 C -0.033 4.033 19 C -0.182 4.182 20 N 0.555 4.445 21 O -0.386 6.386 22 O -0.388 6.388 23 C -0.029 4.029 24 C -0.237 4.237 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.022 0.978 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.170 0.830 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.109 -3.086 15.846 16.440 hybrid contribution -0.554 -0.555 -0.485 0.922 sum 2.555 -3.642 15.361 15.992 Atomic orbital electron populations 1.22416 0.99343 1.01229 1.01992 1.22034 0.92045 0.91654 1.01423 1.62383 1.58901 1.01681 1.02307 1.19801 0.94837 0.93767 0.85175 1.21121 1.21731 1.21511 0.90045 0.91912 1.24976 0.95304 0.95224 0.99063 1.69949 1.32231 1.29299 1.22419 0.86519 0.80101 0.78765 0.82187 1.20764 1.21253 1.19748 1.22162 0.96531 0.99420 0.90046 1.23266 0.77217 1.01471 0.99708 1.86390 1.20801 1.71214 1.39744 1.19581 0.91895 0.87644 0.86040 1.20528 0.90810 1.05356 1.00595 1.20819 1.01806 0.91073 0.89618 1.20911 0.91928 1.12762 0.92644 1.43536 1.01258 0.98242 1.01443 1.94525 0.96598 1.62748 1.84705 1.94517 1.74305 1.41675 1.28339 1.20776 0.90511 0.93798 0.97856 1.21322 1.01568 1.05358 0.95479 0.93835 0.91040 0.93237 0.89746 0.93312 0.97833 0.95628 0.92908 0.92633 0.90038 0.91252 0.91709 0.82466 0.82509 0.82988 0.83220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.02 9.26 37.16 0.34 -2.67 16 2 C 0.06 0.98 5.68 -3.82 -0.02 0.96 16 3 N -0.53 -10.20 4.64 -236.06 -1.10 -11.30 16 4 C 0.19 4.55 4.54 -4.98 -0.02 4.53 16 5 C -0.51 -13.53 8.39 -34.44 -0.29 -13.81 16 6 H 0.06 1.68 7.39 -52.49 -0.39 1.30 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -25.77 13.29 55.43 0.74 -25.03 16 9 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 C 0.05 0.71 5.12 -3.82 -0.02 0.69 16 14 C 0.06 0.67 4.80 37.16 0.18 0.85 16 15 O -0.27 -3.59 10.08 -19.41 -0.20 -3.79 16 16 C 0.20 2.18 6.69 -39.22 -0.26 1.91 16 17 C -0.15 -1.55 9.99 -39.43 -0.39 -1.94 16 18 C -0.01 -0.14 9.55 -39.61 -0.38 -0.51 16 19 C -0.10 -1.08 6.85 -79.94 -0.55 -1.63 16 20 N 0.04 0.51 4.45 33.97 0.15 0.66 16 21 O -0.17 -2.33 18.44 -29.46 -0.54 -2.88 16 22 O -0.18 -2.36 18.44 -29.46 -0.54 -2.91 16 23 C -0.01 -0.10 9.55 -39.60 -0.38 -0.47 16 24 C -0.22 -1.99 9.04 -39.43 -0.36 -2.35 16 25 H 0.04 0.60 6.33 -51.93 -0.33 0.27 16 26 H 0.07 1.35 6.29 -51.93 -0.33 1.03 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.65 6.98 -51.93 -0.36 1.29 16 29 H 0.05 0.72 6.32 -51.93 -0.33 0.39 16 30 H 0.00 0.10 6.02 -51.93 -0.31 -0.21 16 31 H 0.03 0.67 7.91 -51.93 -0.41 0.26 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.06 0.78 6.05 -51.93 -0.31 0.46 16 34 H 0.08 1.27 7.92 -51.93 -0.41 0.86 16 35 H 0.07 0.74 5.83 -51.93 -0.30 0.44 16 36 H 0.06 0.56 7.67 -51.93 -0.40 0.16 16 37 H 0.16 1.43 8.06 -52.48 -0.42 1.00 16 38 H 0.16 1.27 7.61 -52.48 -0.40 0.87 16 39 H 0.15 1.18 7.61 -52.48 -0.40 0.78 16 40 H 0.15 1.06 6.30 -52.49 -0.33 0.73 16 LS Contribution 335.83 15.07 5.06 5.06 Total: -1.00 -30.18 335.83 -8.69 -38.87 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -4.99 Total: -1.69 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -2.24 Total: -13.03 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: -0.21 Total: -35.66 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -1.28 Total: -9.57 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.18 -8.69 -38.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514116.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.568 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds