Wall clock time and date at job start Tue Mar 31 2020 08:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46904 * 109.46786 * 2 1 4 4 C 1.46894 * 111.00318 * 297.32279 * 3 2 1 5 5 C 1.50704 * 109.46866 * 292.71370 * 4 3 2 6 6 H 1.08000 * 119.99643 * 355.02399 * 5 4 3 7 7 C 1.37878 * 120.00124 * 175.02620 * 5 4 3 8 8 N 1.31517 * 119.99752 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00138 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46793 * 89.99788 * 9 7 5 11 11 H 1.48500 * 109.46997 * 209.99925 * 9 7 5 12 12 H 1.48500 * 109.47069 * 329.99882 * 9 7 5 13 13 C 1.46899 * 110.99705 * 61.27371 * 3 2 1 14 14 C 1.53010 * 109.47403 * 66.04538 * 13 3 2 15 15 O 1.42898 * 109.47086 * 64.99384 * 14 13 3 16 16 C 1.35895 * 116.99859 * 180.02562 * 15 14 13 17 17 C 1.38732 * 120.05473 * 180.02562 * 16 15 14 18 18 C 1.38143 * 119.94461 * 180.02562 * 17 16 15 19 19 C 1.38257 * 120.05766 * 0.02562 * 18 17 16 20 20 N 1.48002 * 119.94902 * 179.97438 * 19 18 17 21 21 O 1.21803 * 119.99725 * 0.02562 * 20 19 18 22 22 O 1.21801 * 120.00423 * 179.72781 * 20 19 18 23 23 C 1.38266 * 120.11124 * 0.25893 * 19 18 17 24 24 C 1.38153 * 120.05463 * 359.44894 * 23 19 18 25 25 H 1.08996 * 109.47056 * 299.42637 * 1 2 3 26 26 H 1.09005 * 109.46844 * 59.42972 * 1 2 3 27 27 H 1.09003 * 109.46891 * 179.42617 * 1 2 3 28 28 H 1.09000 * 109.47112 * 240.00656 * 2 1 3 29 29 H 1.08997 * 109.47120 * 120.00327 * 2 1 3 30 30 H 1.08997 * 109.47298 * 52.71544 * 4 3 2 31 31 H 1.09000 * 109.47362 * 172.71946 * 4 3 2 32 32 H 0.97002 * 119.99943 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.47689 * 306.04504 * 13 3 2 34 34 H 1.09000 * 109.47446 * 186.03919 * 13 3 2 35 35 H 1.09000 * 109.46364 * 304.99830 * 14 13 3 36 36 H 1.08999 * 109.47338 * 185.00191 * 14 13 3 37 37 H 1.08007 * 120.03033 * 359.97438 * 17 16 15 38 38 H 1.08004 * 119.96922 * 180.02562 * 18 17 16 39 39 H 1.08003 * 119.97814 * 179.71978 * 23 19 18 40 40 H 1.08001 * 120.02885 * 180.25304 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.6017 2.0912 -1.2183 5 6 2.3008 1.4918 -2.4113 6 1 3.0465 0.7234 -2.2702 7 6 1.9885 1.9244 -3.6826 8 7 1.0802 2.8598 -3.8543 9 14 2.8546 1.1809 -5.1613 10 1 2.0893 0.0028 -5.6425 11 1 2.9399 2.1923 -6.2453 12 1 4.2233 0.7564 -4.7716 13 6 1.5736 2.1010 1.2027 14 6 2.2314 1.4824 2.4379 15 8 3.6443 1.6872 2.3782 16 6 4.3832 1.1946 3.4068 17 6 5.7608 1.3582 3.4136 18 6 6.5097 0.8560 4.4601 19 6 5.8876 0.1904 5.5000 20 7 6.6923 -0.3471 6.6198 21 8 7.9017 -0.2025 6.6249 22 8 6.1447 -0.9293 7.5389 23 6 4.5153 0.0209 5.4928 24 6 3.7612 0.5265 4.4515 25 1 -0.3633 0.5049 0.8950 26 1 -0.3633 0.5227 -0.8849 27 1 -0.3633 -1.0276 -0.0103 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 0.5232 1.9942 -1.3427 31 1 1.8645 3.1458 -1.1354 32 1 0.8607 3.1645 -4.7487 33 1 0.4899 2.0234 1.2909 34 1 1.8578 3.1506 1.1271 35 1 2.0200 0.4134 2.4650 36 1 1.8334 1.9543 3.3363 37 1 6.2475 1.8769 2.6008 38 1 7.5822 0.9835 4.4660 39 1 4.0320 -0.5033 6.3040 40 1 2.6889 0.3974 4.4483 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081514116.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:41 Heat of formation + Delta-G solvation = -27.267202 kcal Electronic energy + Delta-G solvation = -22963.297948 eV Core-core repulsion = 19360.389109 eV Total energy + Delta-G solvation = -3602.908839 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.19223 -41.41057 -39.36618 -38.24070 -37.62693 -34.79134 -32.76273 -32.31472 -31.34067 -30.75087 -27.93481 -27.03414 -25.29741 -24.73558 -23.61511 -22.94350 -20.78507 -20.34305 -19.68131 -19.36191 -18.55868 -18.36459 -17.48776 -17.07365 -16.64741 -16.35966 -15.99846 -15.73686 -15.01909 -14.95931 -14.71789 -14.47820 -14.16715 -13.98552 -13.65204 -13.14894 -13.01941 -12.96587 -12.75402 -12.69226 -12.55187 -12.42050 -12.27474 -12.27016 -12.14133 -11.95860 -11.83950 -11.37732 -11.19456 -10.59360 -10.48606 -9.75243 -8.88597 -8.18933 -6.27416 -1.14970 -0.06477 0.35474 0.45153 1.40008 1.41273 1.52288 1.99735 2.27606 2.40232 3.14052 3.29073 3.37879 3.49465 3.63753 3.84059 3.98594 4.11209 4.21599 4.24876 4.32159 4.43388 4.50695 4.58393 4.66904 4.74062 4.74949 4.82158 4.96996 4.98049 5.03637 5.12348 5.23681 5.38286 5.40202 5.52313 5.68343 6.09141 6.18942 6.37588 6.54231 6.69145 6.89698 7.41958 8.91164 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.024267 B = 0.002881 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.547960 B = 9715.985326 C =10317.989837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.057 3.943 3 N -0.541 5.541 4 C 0.204 3.796 5 C -0.517 4.517 6 H 0.057 0.943 7 C 0.003 3.997 8 N -0.934 5.934 9 Si 0.961 3.039 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.044 3.956 14 C 0.063 3.937 15 O -0.299 6.299 16 C 0.188 3.812 17 C -0.159 4.159 18 C -0.011 4.011 19 C -0.111 4.111 20 N 0.041 4.959 21 O -0.194 6.194 22 O -0.186 6.186 23 C -0.006 4.006 24 C -0.206 4.206 25 H 0.068 0.932 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.084 0.916 30 H -0.016 1.016 31 H -0.004 1.004 32 H 0.263 0.737 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.162 0.838 38 H 0.169 0.831 39 H 0.171 0.829 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.688 -4.724 17.891 18.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.071 4.071 3 N -0.265 5.265 4 C 0.078 3.922 5 C -0.555 4.555 6 H 0.076 0.924 7 C -0.194 4.194 8 N -0.575 5.575 9 Si 0.786 3.214 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.084 4.084 14 C -0.012 4.012 15 O -0.210 6.210 16 C 0.139 3.861 17 C -0.178 4.178 18 C -0.030 4.030 19 C -0.195 4.195 20 N 0.552 4.448 21 O -0.404 6.404 22 O -0.398 6.398 23 C -0.025 4.025 24 C -0.225 4.225 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.002 0.998 31 H 0.014 0.986 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.121 0.879 37 H 0.180 0.820 38 H 0.186 0.814 39 H 0.188 0.812 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.810 -4.273 17.056 17.806 hybrid contribution -0.479 -0.170 -0.808 0.954 sum 2.331 -4.443 16.248 17.005 Atomic orbital electron populations 1.22307 0.98144 1.02385 1.01214 1.22042 0.93038 0.90319 1.01654 1.62230 1.59674 1.02625 1.01968 1.19404 0.93267 0.92431 0.87093 1.21445 1.21537 1.21188 0.91361 0.92437 1.25809 0.96003 0.95631 1.01996 1.70065 1.33681 1.30665 1.23057 0.85505 0.79137 0.78090 0.78645 1.19918 1.20957 1.19186 1.22247 0.97839 0.98641 0.89708 1.23268 0.76608 1.02373 0.98925 1.86343 1.21636 1.71995 1.41013 1.19748 0.92001 0.88190 0.86187 1.20640 0.90945 1.05449 1.00789 1.20937 1.02464 0.90497 0.89104 1.21134 0.92536 1.13570 0.92292 1.43812 1.01270 0.97956 1.01760 1.94517 0.97272 1.63515 1.85137 1.94497 1.74201 1.42057 1.29054 1.21026 0.89792 0.93354 0.98362 1.21542 1.02774 1.03973 0.94230 0.91362 0.95037 0.91016 0.92757 0.89771 0.99802 0.98619 0.92838 0.91291 0.91474 0.89717 0.87898 0.82040 0.81404 0.81180 0.80499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.45 9.26 71.98 0.67 -4.79 16 2 C 0.06 1.90 5.68 86.30 0.49 2.39 16 3 N -0.54 -20.68 4.64 -900.76 -4.18 -24.86 16 4 C 0.20 10.16 4.54 85.56 0.39 10.54 16 5 C -0.52 -28.29 8.39 25.60 0.21 -28.07 16 6 H 0.06 3.14 7.39 -2.91 -0.02 3.11 16 7 C 0.00 0.19 5.46 84.65 0.46 0.65 16 8 N -0.93 -54.77 13.29 21.45 0.28 -54.49 16 9 Si 0.96 43.53 29.54 68.60 2.03 45.56 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 13 C 0.04 1.25 5.12 86.31 0.44 1.69 16 14 C 0.06 1.22 4.80 71.99 0.35 1.57 16 15 O -0.30 -7.21 10.08 -92.37 -0.93 -8.14 16 16 C 0.19 3.63 6.69 22.51 0.15 3.78 16 17 C -0.16 -2.95 9.99 22.37 0.22 -2.72 16 18 C -0.01 -0.20 9.55 22.25 0.21 0.02 16 19 C -0.11 -2.23 6.85 36.39 0.25 -1.98 16 20 N 0.04 1.01 4.45 -46.45 -0.21 0.80 16 21 O -0.19 -5.20 18.44 18.88 0.35 -4.85 16 22 O -0.19 -4.79 18.44 18.88 0.35 -4.45 16 23 C -0.01 -0.10 9.55 22.26 0.21 0.11 16 24 C -0.21 -2.99 9.04 22.37 0.20 -2.79 16 25 H 0.07 1.69 6.33 -2.39 -0.02 1.67 16 26 H 0.03 1.19 6.29 -2.38 -0.01 1.17 16 27 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.05 2.11 6.98 -2.39 -0.02 2.10 16 29 H 0.08 2.20 6.32 -2.39 -0.02 2.18 16 30 H -0.02 -0.83 6.02 -2.39 -0.01 -0.84 16 31 H 0.00 -0.23 7.91 -2.39 -0.02 -0.25 16 32 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 33 H 0.07 1.78 6.05 -2.38 -0.01 1.76 16 34 H 0.07 2.09 7.92 -2.39 -0.02 2.07 16 35 H 0.08 1.40 5.83 -2.39 -0.01 1.39 16 36 H 0.10 1.27 7.67 -2.39 -0.02 1.25 16 37 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 38 H 0.17 2.54 7.61 -2.91 -0.02 2.52 16 39 H 0.17 2.05 7.61 -2.91 -0.02 2.03 16 40 H 0.18 1.56 6.30 -2.91 -0.02 1.54 16 Total: -1.00 -67.27 335.83 3.01 -64.26 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 1.06 Total: 5.76 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: 4.26 Total: -19.59 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -4.10 Total: -78.55 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.23 Total: -17.44 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -67.27 3.01 -64.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514116.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.988 kcal (2) G-P(sol) polarization free energy of solvation -67.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds