Wall clock time and date at job start Tue Mar 31 2020 07:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.46641 * 2 1 4 4 N 1.46496 * 109.46630 * 119.99627 * 2 1 3 5 5 C 1.34778 * 120.00321 * 274.99650 * 4 2 1 6 6 O 1.21620 * 119.99431 * 0.02562 * 5 4 2 7 7 C 1.47373 * 120.00494 * 180.02562 * 5 4 2 8 8 C 1.47019 * 127.19731 * 180.02562 * 7 5 4 9 9 C 1.34173 * 105.95558 * 179.97438 * 8 7 5 10 10 O 1.34214 * 109.12884 * 359.97438 * 9 8 7 11 11 C 1.33659 * 110.90317 * 359.76105 * 10 9 8 12 12 C 1.50694 * 109.47090 * 239.99798 * 2 1 3 13 13 O 1.21281 * 119.99914 * 251.20947 * 12 2 1 14 14 N 1.34776 * 120.00397 * 71.21279 * 12 2 1 15 15 C 1.46493 * 120.00235 * 183.75108 * 14 12 2 16 16 C 1.46501 * 119.99589 * 3.74960 * 14 12 2 17 17 H 1.08995 * 109.47420 * 354.17559 * 16 14 12 18 18 C 1.53004 * 109.47080 * 114.17880 * 16 14 12 19 19 C 1.50699 * 109.47223 * 234.17436 * 16 14 12 20 20 H 1.08001 * 119.99796 * 0.02562 * 19 16 14 21 21 C 1.37877 * 120.00472 * 180.02562 * 19 16 14 22 22 N 1.31511 * 120.00699 * 180.02562 * 21 19 16 23 23 Si 1.86802 * 119.99478 * 359.97438 * 21 19 16 24 24 H 1.48502 * 109.46856 * 90.00423 * 23 21 19 25 25 H 1.48505 * 109.46983 * 209.99864 * 23 21 19 26 26 H 1.48497 * 109.47456 * 329.99937 * 23 21 19 27 27 H 1.09004 * 109.46999 * 303.61477 * 1 2 3 28 28 H 1.09007 * 109.46731 * 63.61150 * 1 2 3 29 29 H 1.08994 * 109.46801 * 183.60949 * 1 2 3 30 30 H 0.97001 * 120.00143 * 95.01020 * 4 2 1 31 31 H 1.08006 * 127.02023 * 359.93998 * 8 7 5 32 32 H 1.08004 * 125.43631 * 179.97438 * 9 8 7 33 33 H 1.07995 * 125.79749 * 180.26337 * 11 10 9 34 34 H 1.08993 * 109.47172 * 86.57866 * 15 14 12 35 35 H 1.08998 * 109.47305 * 326.57746 * 15 14 12 36 36 H 1.09006 * 109.47087 * 206.58147 * 15 14 12 37 37 H 1.09001 * 109.46642 * 299.99606 * 18 16 14 38 38 H 1.08995 * 109.47256 * 59.99579 * 18 16 14 39 39 H 1.08997 * 109.47136 * 179.97438 * 18 16 14 40 40 H 0.96994 * 120.00232 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3572 6 8 1.8574 1.1618 2.4117 7 6 2.6387 -0.7126 3.5604 8 6 2.8383 -0.1383 4.8990 9 6 3.2952 -1.1400 5.6658 10 8 3.3888 -2.2544 4.9237 11 6 2.9974 -2.0245 3.6666 12 6 2.0324 -0.7104 -1.2304 13 8 2.5535 -1.8010 -1.1306 14 7 1.9027 -0.1339 -2.4417 15 6 2.3157 -0.8586 -3.6459 16 6 1.3485 1.2176 -2.5540 17 1 1.0056 1.5523 -1.5750 18 6 2.4290 2.1706 -3.0692 19 6 0.1884 1.2066 -3.5158 20 1 -0.1068 0.2849 -3.9951 21 6 -0.4961 2.3730 -3.7839 22 7 -1.5088 2.3633 -4.6229 23 14 0.0142 3.9670 -2.9543 24 1 1.0251 4.6600 -3.7929 25 1 -1.1746 4.8413 -2.7883 26 1 0.5978 3.6670 -1.6221 27 1 -0.3633 0.5689 0.8559 28 1 -0.3633 0.4568 -0.9207 29 1 -0.3633 -1.0256 0.0647 30 1 2.2491 -1.6317 1.1527 31 1 2.6551 0.8818 5.2028 32 1 3.5474 -1.0621 6.7131 33 1 2.9720 -2.7530 2.8697 34 1 1.4918 -1.4801 -3.9965 35 1 3.1736 -1.4897 -3.4139 36 1 2.5892 -0.1453 -4.4234 37 1 3.2680 2.1787 -2.3735 38 1 2.7719 1.8360 -4.0482 39 1 2.0166 3.1761 -3.1532 40 1 -1.9905 3.1839 -4.8112 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103441721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:56 Heat of formation + Delta-G solvation = -42.742865 kcal Electronic energy + Delta-G solvation = -24063.400120 eV Core-core repulsion = 20459.820205 eV Total energy + Delta-G solvation = -3603.579914 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.71382 -40.13827 -38.78568 -35.98742 -34.79944 -33.09753 -32.66441 -31.09106 -30.22985 -29.49392 -26.60398 -25.35054 -24.54486 -22.83704 -21.66436 -21.47450 -20.09559 -19.21168 -18.12616 -17.18420 -16.57085 -16.33384 -16.07261 -15.72284 -15.19667 -15.11797 -14.83243 -14.42118 -14.08115 -13.53476 -13.36885 -13.11849 -13.03026 -12.68017 -12.56013 -12.40808 -12.06861 -11.98991 -11.82705 -11.47661 -11.27033 -11.14765 -10.73563 -10.29177 -10.00644 -9.99092 -9.82877 -9.55777 -9.27853 -9.07727 -8.93405 -8.77786 -7.92492 -6.28201 -4.31927 1.19619 1.89975 2.70753 2.97669 3.04950 3.14708 3.26481 3.29180 3.35798 3.78675 4.21432 4.41082 4.51995 4.84218 4.94284 5.02453 5.30366 5.43020 5.45456 5.47136 5.71393 5.87297 5.97058 6.05689 6.07691 6.08762 6.15812 6.20076 6.28779 6.41651 6.45527 6.51242 6.70232 6.73294 6.79952 7.13245 7.43583 7.57273 7.91683 8.25296 8.36665 8.57536 8.75922 9.30824 10.83805 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022384 B = 0.004164 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.577868 B = 6722.628476 C = 7434.885031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.128 3.872 3 H 0.111 0.889 4 N -0.708 5.708 5 C 0.586 3.414 6 O -0.536 6.536 7 C -0.230 4.230 8 C -0.164 4.164 9 C -0.045 4.045 10 O -0.175 6.175 11 C 0.022 3.978 12 C 0.510 3.490 13 O -0.569 6.569 14 N -0.576 5.576 15 C 0.098 3.902 16 C 0.219 3.781 17 H 0.056 0.944 18 C -0.167 4.167 19 C -0.534 4.534 20 H 0.084 0.916 21 C 0.081 3.919 22 N -0.887 5.887 23 Si 0.877 3.123 24 H -0.275 1.275 25 H -0.292 1.292 26 H -0.262 1.262 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.405 0.595 31 H 0.160 0.840 32 H 0.208 0.792 33 H 0.213 0.787 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.526 -6.528 14.860 18.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.020 3.980 3 H 0.129 0.871 4 N -0.361 5.361 5 C 0.374 3.626 6 O -0.413 6.413 7 C -0.235 4.235 8 C -0.183 4.183 9 C -0.111 4.111 10 O -0.070 6.070 11 C -0.048 4.048 12 C 0.296 3.704 13 O -0.450 6.450 14 N -0.305 5.305 15 C -0.045 4.045 16 C 0.116 3.884 17 H 0.074 0.926 18 C -0.225 4.225 19 C -0.572 4.572 20 H 0.102 0.898 21 C -0.124 4.124 22 N -0.523 5.523 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.219 1.219 26 H -0.187 1.187 27 H 0.086 0.914 28 H 0.119 0.881 29 H 0.079 0.921 30 H 0.242 0.758 31 H 0.177 0.823 32 H 0.225 0.775 33 H 0.230 0.770 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.527 -6.381 14.907 18.320 hybrid contribution 0.153 0.845 0.086 0.863 sum 8.680 -5.535 14.992 18.187 Atomic orbital electron populations 1.22254 0.92030 1.02989 1.05158 1.20805 0.96449 0.97747 0.82953 0.87086 1.45656 1.67233 1.14530 1.08663 1.17239 0.77399 0.86168 0.81843 1.90803 1.50305 1.15347 1.84867 1.21538 1.11625 0.94514 0.95822 1.22798 1.03552 1.00953 0.91025 1.23934 1.05912 0.83481 0.97726 1.83795 1.66414 1.36820 1.20021 1.24547 0.98079 0.96836 0.85367 1.20342 0.79072 0.85880 0.85088 1.90581 1.46270 1.21645 1.86546 1.47843 1.59974 1.17604 1.05111 1.21430 0.99350 0.96618 0.87054 1.19622 0.92275 0.77499 0.98977 0.92611 1.22517 0.98766 0.99965 1.01231 1.21076 1.12564 0.97347 1.26244 0.89835 1.24865 0.94474 0.98636 0.94383 1.69855 1.20128 1.28444 1.33915 0.87012 0.77538 0.83936 0.80843 1.20194 1.21893 1.18715 0.91359 0.88143 0.92144 0.75839 0.82270 0.77518 0.77042 0.92891 0.92184 0.90724 0.94654 0.92124 0.92877 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 9.07 37.16 0.34 -2.53 16 2 C 0.13 2.25 2.12 -69.08 -0.15 2.10 16 3 H 0.11 2.09 6.53 -51.93 -0.34 1.75 16 4 N -0.71 -10.70 5.00 -56.02 -0.28 -10.98 16 5 C 0.59 9.23 7.78 -12.54 -0.10 9.14 16 6 O -0.54 -10.33 16.65 5.26 0.09 -10.24 16 7 C -0.23 -2.90 6.31 -103.28 -0.65 -3.56 16 8 C -0.16 -1.79 11.01 -37.46 -0.41 -2.20 16 9 C -0.04 -0.37 12.03 29.30 0.35 -0.02 16 10 O -0.18 -1.66 10.52 7.64 0.08 -1.58 16 11 C 0.02 0.21 11.61 30.08 0.35 0.56 16 12 C 0.51 9.67 7.00 -10.99 -0.08 9.59 16 13 O -0.57 -11.24 15.45 5.56 0.09 -11.15 16 14 N -0.58 -11.35 2.75 -175.27 -0.48 -11.84 16 15 C 0.10 1.76 9.38 59.84 0.56 2.32 16 16 C 0.22 4.67 1.30 -69.08 -0.09 4.58 16 17 H 0.06 1.21 3.59 -51.93 -0.19 1.02 16 18 C -0.17 -3.34 8.75 37.16 0.33 -3.01 16 19 C -0.53 -13.43 8.57 -34.44 -0.30 -13.72 16 20 H 0.08 2.31 7.66 -52.49 -0.40 1.90 16 21 C 0.08 2.12 5.45 -17.82 -0.10 2.03 16 22 N -0.89 -25.12 13.96 55.43 0.77 -24.35 16 23 Si 0.88 20.20 24.37 -169.99 -4.14 16.06 16 24 H -0.28 -6.18 6.87 56.52 0.39 -5.79 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 26 H -0.26 -5.80 6.53 56.52 0.37 -5.43 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.10 1.94 5.95 -51.93 -0.31 1.64 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.41 5.35 6.69 -40.82 -0.27 5.08 16 31 H 0.16 1.63 8.06 -52.48 -0.42 1.21 16 32 H 0.21 0.85 8.06 -52.48 -0.42 0.43 16 33 H 0.21 1.40 7.47 -52.49 -0.39 1.01 16 34 H 0.05 0.96 8.11 -51.93 -0.42 0.54 16 35 H 0.06 1.00 7.48 -51.93 -0.39 0.61 16 36 H 0.07 1.29 6.76 -51.93 -0.35 0.94 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 1.16 6.92 -51.93 -0.36 0.80 16 39 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 40 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 328.86 15.07 4.96 4.96 Total: -1.00 -31.55 328.86 -3.75 -35.30 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -4.89 Total: 8.52 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 0.06 Total: 5.29 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.01 Total: -47.17 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.25 Total: -22.97 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.14 Total: 16.06 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.55 -3.75 -35.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.442 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds