Wall clock time and date at job start Tue Mar 31 2020 07:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.46641 * 2 1 4 4 N 1.46496 * 109.46630 * 119.99627 * 2 1 3 5 5 C 1.34778 * 120.00321 * 274.99650 * 4 2 1 6 6 O 1.21620 * 119.99431 * 0.02562 * 5 4 2 7 7 C 1.47373 * 120.00494 * 180.02562 * 5 4 2 8 8 C 1.47019 * 127.19731 * 180.02562 * 7 5 4 9 9 C 1.34173 * 105.95558 * 179.97438 * 8 7 5 10 10 O 1.34214 * 109.12884 * 359.97438 * 9 8 7 11 11 C 1.33659 * 110.90317 * 359.76105 * 10 9 8 12 12 C 1.50694 * 109.47090 * 239.99798 * 2 1 3 13 13 O 1.21281 * 119.99914 * 251.20947 * 12 2 1 14 14 N 1.34776 * 120.00397 * 71.21279 * 12 2 1 15 15 C 1.46493 * 120.00235 * 183.75108 * 14 12 2 16 16 C 1.46501 * 119.99589 * 3.74960 * 14 12 2 17 17 H 1.08995 * 109.47420 * 354.17559 * 16 14 12 18 18 C 1.53004 * 109.47080 * 114.17880 * 16 14 12 19 19 C 1.50699 * 109.47223 * 234.17436 * 16 14 12 20 20 H 1.08001 * 119.99796 * 0.02562 * 19 16 14 21 21 C 1.37877 * 120.00472 * 180.02562 * 19 16 14 22 22 N 1.31511 * 120.00699 * 180.02562 * 21 19 16 23 23 Si 1.86802 * 119.99478 * 359.97438 * 21 19 16 24 24 H 1.48502 * 109.46856 * 90.00423 * 23 21 19 25 25 H 1.48505 * 109.46983 * 209.99864 * 23 21 19 26 26 H 1.48497 * 109.47456 * 329.99937 * 23 21 19 27 27 H 1.09004 * 109.46999 * 303.61477 * 1 2 3 28 28 H 1.09007 * 109.46731 * 63.61150 * 1 2 3 29 29 H 1.08994 * 109.46801 * 183.60949 * 1 2 3 30 30 H 0.97001 * 120.00143 * 95.01020 * 4 2 1 31 31 H 1.08006 * 127.02023 * 359.93998 * 8 7 5 32 32 H 1.08004 * 125.43631 * 179.97438 * 9 8 7 33 33 H 1.07995 * 125.79749 * 180.26337 * 11 10 9 34 34 H 1.08993 * 109.47172 * 86.57866 * 15 14 12 35 35 H 1.08998 * 109.47305 * 326.57746 * 15 14 12 36 36 H 1.09006 * 109.47087 * 206.58147 * 15 14 12 37 37 H 1.09001 * 109.46642 * 299.99606 * 18 16 14 38 38 H 1.08995 * 109.47256 * 59.99579 * 18 16 14 39 39 H 1.08997 * 109.47136 * 179.97438 * 18 16 14 40 40 H 0.96994 * 120.00232 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3572 6 8 1.8574 1.1618 2.4117 7 6 2.6387 -0.7126 3.5604 8 6 2.8383 -0.1383 4.8990 9 6 3.2952 -1.1400 5.6658 10 8 3.3888 -2.2544 4.9237 11 6 2.9974 -2.0245 3.6666 12 6 2.0324 -0.7104 -1.2304 13 8 2.5535 -1.8010 -1.1306 14 7 1.9027 -0.1339 -2.4417 15 6 2.3157 -0.8586 -3.6459 16 6 1.3485 1.2176 -2.5540 17 1 1.0056 1.5523 -1.5750 18 6 2.4290 2.1706 -3.0692 19 6 0.1884 1.2066 -3.5158 20 1 -0.1068 0.2849 -3.9951 21 6 -0.4961 2.3730 -3.7839 22 7 -1.5088 2.3633 -4.6229 23 14 0.0142 3.9670 -2.9543 24 1 1.0251 4.6600 -3.7929 25 1 -1.1746 4.8413 -2.7883 26 1 0.5978 3.6670 -1.6221 27 1 -0.3633 0.5689 0.8559 28 1 -0.3633 0.4568 -0.9207 29 1 -0.3633 -1.0256 0.0647 30 1 2.2491 -1.6317 1.1527 31 1 2.6551 0.8818 5.2028 32 1 3.5474 -1.0621 6.7131 33 1 2.9720 -2.7530 2.8697 34 1 1.4918 -1.4801 -3.9965 35 1 3.1736 -1.4897 -3.4139 36 1 2.5892 -0.1453 -4.4234 37 1 3.2680 2.1787 -2.3735 38 1 2.7719 1.8360 -4.0482 39 1 2.0166 3.1761 -3.1532 40 1 -1.9905 3.1839 -4.8112 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103441721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:56 Heat of formation + Delta-G solvation = -65.674158 kcal Electronic energy + Delta-G solvation = -24064.394495 eV Core-core repulsion = 20459.820205 eV Total energy + Delta-G solvation = -3604.574290 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.47847 -41.57987 -40.14636 -37.63628 -36.16809 -34.59588 -33.98984 -32.23480 -31.96225 -30.41017 -28.09672 -27.20870 -25.79712 -24.14293 -23.09927 -22.38543 -21.23812 -20.42893 -19.34480 -18.97029 -17.91771 -17.62240 -17.12170 -17.06018 -16.74672 -16.39918 -16.04045 -15.69956 -15.53920 -15.08408 -14.74678 -14.52645 -14.26168 -14.13500 -13.83976 -13.62842 -13.59890 -13.37597 -13.31960 -12.98274 -12.89921 -12.70136 -12.45960 -12.04525 -11.55758 -11.41644 -11.28791 -10.92526 -10.86138 -10.74018 -10.33115 -9.74661 -9.54646 -8.32547 -6.38805 0.32155 1.13378 1.31419 1.40282 1.45905 1.46350 1.70045 2.06545 2.24508 2.28669 2.36792 3.02357 3.33134 3.59781 3.77974 3.96194 4.00927 4.12811 4.27593 4.46472 4.53696 4.54862 4.61588 4.65663 4.72118 4.73930 4.77657 4.87874 4.95597 5.00006 5.11947 5.19175 5.25001 5.33998 5.43147 5.66354 5.98299 6.08188 6.41395 6.56728 6.66395 7.01193 7.09007 7.28416 8.83035 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022384 B = 0.004164 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.577868 B = 6722.628476 C = 7434.885031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.132 3.868 3 H 0.100 0.900 4 N -0.699 5.699 5 C 0.587 3.413 6 O -0.579 6.579 7 C -0.268 4.268 8 C -0.196 4.196 9 C -0.020 4.020 10 O -0.174 6.174 11 C 0.046 3.954 12 C 0.511 3.489 13 O -0.574 6.574 14 N -0.583 5.583 15 C 0.098 3.902 16 C 0.223 3.777 17 H 0.058 0.942 18 C -0.165 4.165 19 C -0.524 4.524 20 H 0.049 0.951 21 C 0.033 3.967 22 N -0.935 5.935 23 Si 0.928 3.072 24 H -0.261 1.261 25 H -0.299 1.299 26 H -0.248 1.248 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.416 0.584 31 H 0.156 0.844 32 H 0.251 0.749 33 H 0.242 0.758 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.427 -7.336 16.928 21.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.024 3.976 3 H 0.118 0.882 4 N -0.353 5.353 5 C 0.377 3.623 6 O -0.460 6.460 7 C -0.273 4.273 8 C -0.215 4.215 9 C -0.086 4.086 10 O -0.069 6.069 11 C -0.025 4.025 12 C 0.299 3.701 13 O -0.455 6.455 14 N -0.312 5.312 15 C -0.044 4.044 16 C 0.120 3.880 17 H 0.075 0.925 18 C -0.223 4.223 19 C -0.562 4.562 20 H 0.067 0.933 21 C -0.167 4.167 22 N -0.574 5.574 23 Si 0.755 3.245 24 H -0.187 1.187 25 H -0.226 1.226 26 H -0.171 1.171 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.254 0.746 31 H 0.174 0.826 32 H 0.267 0.733 33 H 0.258 0.742 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.463 -7.235 16.988 21.223 hybrid contribution -0.428 0.945 -0.522 1.162 sum 10.036 -6.289 16.466 20.283 Atomic orbital electron populations 1.22143 0.92019 1.03510 1.03938 1.20622 0.96372 0.97292 0.83323 0.88238 1.45535 1.66992 1.14867 1.07858 1.17685 0.76379 0.85738 0.82498 1.90770 1.52407 1.17286 1.85548 1.21439 1.14496 0.96035 0.95327 1.22950 1.05708 1.01833 0.91040 1.24651 1.03114 0.81975 0.98816 1.83851 1.65914 1.37187 1.19907 1.25002 0.95458 0.96071 0.85946 1.20514 0.78695 0.85752 0.85180 1.90572 1.46491 1.21809 1.86671 1.47856 1.60113 1.17248 1.05971 1.21496 0.99515 0.96730 0.86687 1.19439 0.91680 0.78959 0.97897 0.92471 1.22445 0.98821 0.98855 1.02189 1.21209 1.13418 0.95779 1.25821 0.93311 1.25543 0.94432 1.01800 0.94951 1.69984 1.21923 1.29321 1.36196 0.86176 0.77261 0.80247 0.80804 1.18726 1.22630 1.17146 0.91136 0.90476 0.90970 0.74592 0.82639 0.73327 0.74224 0.93765 0.90656 0.90212 0.92287 0.91511 0.93497 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.40 9.07 71.99 0.65 -4.74 16 2 C 0.13 4.53 2.12 44.25 0.09 4.63 16 3 H 0.10 3.68 6.53 -2.39 -0.02 3.67 16 4 N -0.70 -20.29 5.00 -449.41 -2.25 -22.54 16 5 C 0.59 18.13 7.78 86.65 0.67 18.80 16 6 O -0.58 -22.49 16.65 -4.10 -0.07 -22.56 16 7 C -0.27 -6.38 6.31 -18.99 -0.12 -6.50 16 8 C -0.20 -3.98 11.01 23.65 0.26 -3.72 16 9 C -0.02 -0.27 12.03 66.89 0.80 0.54 16 10 O -0.17 -2.68 10.52 4.42 0.05 -2.63 16 11 C 0.05 0.76 11.61 67.40 0.78 1.54 16 12 C 0.51 18.79 7.00 87.66 0.61 19.40 16 13 O -0.57 -21.60 15.45 -3.03 -0.05 -21.65 16 14 N -0.58 -22.45 2.75 -826.83 -2.28 -24.72 16 15 C 0.10 3.43 9.38 127.77 1.20 4.63 16 16 C 0.22 9.38 1.30 44.25 0.06 9.44 16 17 H 0.06 2.43 3.59 -2.39 -0.01 2.42 16 18 C -0.17 -6.28 8.75 71.98 0.63 -5.65 16 19 C -0.52 -26.67 8.57 25.60 0.22 -26.45 16 20 H 0.05 2.78 7.66 -2.91 -0.02 2.76 16 21 C 0.03 1.73 5.45 84.66 0.46 2.19 16 22 N -0.94 -54.33 13.96 21.45 0.30 -54.03 16 23 Si 0.93 41.33 24.37 68.60 1.67 43.00 16 24 H -0.26 -11.02 6.87 99.48 0.68 -10.33 16 25 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 26 H -0.25 -10.34 6.53 99.48 0.65 -9.69 16 27 H 0.07 2.36 8.14 -2.38 -0.02 2.35 16 28 H 0.08 3.01 5.95 -2.38 -0.01 3.00 16 29 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.42 10.16 6.69 -92.71 -0.62 9.54 16 31 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 32 H 0.25 0.90 8.06 -2.91 -0.02 0.88 16 33 H 0.24 2.30 7.47 -2.91 -0.02 2.28 16 34 H 0.04 1.60 8.11 -2.39 -0.02 1.58 16 35 H 0.07 2.39 7.48 -2.39 -0.02 2.37 16 36 H 0.08 2.68 6.76 -2.38 -0.02 2.66 16 37 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.07 2.43 6.92 -2.39 -0.02 2.41 16 39 H 0.05 1.85 3.27 -2.39 -0.01 1.84 16 40 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -68.97 328.86 4.09 -64.88 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.38 Total: 26.14 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 6.33 Total: 14.11 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -4.23 Total: -101.29 kcal Atomic # 8 Polarization: -46.77 SS G_CDS: -0.07 Total: -46.84 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 1.67 Total: 43.00 kcal Total: -68.97 4.09 -64.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.799 kcal (2) G-P(sol) polarization free energy of solvation -68.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds