Wall clock time and date at job start Tue Mar 31 2020 07:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47300 * 2 1 4 4 N 1.46499 * 109.47221 * 120.00372 * 2 1 3 5 5 C 1.34780 * 119.99773 * 275.00031 * 4 2 1 6 6 O 1.21616 * 120.00260 * 359.97438 * 5 4 2 7 7 C 1.47380 * 119.99623 * 180.02562 * 5 4 2 8 8 C 1.47027 * 127.19016 * 179.97438 * 7 5 4 9 9 C 1.34175 * 105.95370 * 179.97438 * 8 7 5 10 10 O 1.34209 * 109.12443 * 359.97438 * 9 8 7 11 11 C 1.33651 * 110.91105 * 359.76407 * 10 9 8 12 12 C 1.50699 * 109.46965 * 240.00249 * 2 1 3 13 13 O 1.21283 * 119.99843 * 240.00210 * 12 2 1 14 14 N 1.34776 * 120.00475 * 59.99867 * 12 2 1 15 15 C 1.46509 * 119.99370 * 0.02562 * 14 12 2 16 16 C 1.46497 * 120.00710 * 180.02562 * 14 12 2 17 17 H 1.09002 * 109.46725 * 0.02562 * 16 14 12 18 18 C 1.52997 * 109.47188 * 240.00300 * 16 14 12 19 19 C 1.50697 * 109.47081 * 119.99864 * 16 14 12 20 20 H 1.07999 * 120.00055 * 0.02562 * 19 16 14 21 21 C 1.37878 * 119.99687 * 180.02562 * 19 16 14 22 22 N 1.31511 * 120.00458 * 359.97438 * 21 19 16 23 23 Si 1.86805 * 119.99926 * 180.02562 * 21 19 16 24 24 H 1.48503 * 109.46980 * 89.99582 * 23 21 19 25 25 H 1.48493 * 109.47135 * 209.99651 * 23 21 19 26 26 H 1.48498 * 109.47274 * 330.00048 * 23 21 19 27 27 H 1.08995 * 109.46890 * 59.99793 * 1 2 3 28 28 H 1.09000 * 109.46884 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46855 * 299.99985 * 1 2 3 30 30 H 0.97002 * 120.00493 * 94.99643 * 4 2 1 31 31 H 1.07998 * 127.01989 * 359.94043 * 8 7 5 32 32 H 1.07998 * 125.43519 * 180.02562 * 9 8 7 33 33 H 1.08001 * 125.80126 * 180.26301 * 11 10 9 34 34 H 1.09003 * 109.46975 * 269.99637 * 15 14 12 35 35 H 1.08995 * 109.47277 * 29.99688 * 15 14 12 36 36 H 1.09003 * 109.46743 * 150.00175 * 15 14 12 37 37 H 1.09002 * 109.47153 * 299.99573 * 18 16 14 38 38 H 1.09001 * 109.46832 * 179.97438 * 18 16 14 39 39 H 1.09004 * 109.47261 * 59.99745 * 18 16 14 40 40 H 0.96999 * 120.00480 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8583 1.1618 2.4117 7 6 2.6389 -0.7131 3.5603 8 6 2.8395 -0.1385 4.8987 9 6 3.2962 -1.1404 5.6655 10 8 3.3887 -2.2549 4.9235 11 6 2.9969 -2.0251 3.6665 12 6 2.0323 -0.7104 -1.2305 13 8 2.7295 -1.6965 -1.1192 14 7 1.7067 -0.2499 -2.4546 15 6 0.8649 0.9416 -2.5889 16 6 2.1945 -0.9408 -3.6508 17 1 2.7994 -1.7976 -3.3542 18 6 3.0448 0.0205 -4.4838 19 6 1.0221 -1.4140 -4.4708 20 1 0.0144 -1.2192 -4.1348 21 6 1.2359 -2.0956 -5.6501 22 7 2.4630 -2.3323 -6.0596 23 14 -0.2174 -2.6815 -6.6670 24 1 -0.6012 -1.6244 -7.6368 25 1 0.1586 -3.9154 -7.4027 26 1 -1.3649 -2.9704 -5.7699 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.2491 -1.6319 1.1526 31 1 2.6571 0.8817 5.2024 32 1 3.5481 -1.0626 6.7128 33 1 2.9707 -2.7537 2.8697 34 1 -0.1832 0.6441 -2.6221 35 1 1.0288 1.6003 -1.7361 36 1 1.1227 1.4668 -3.5086 37 1 2.4395 0.8771 -4.7805 38 1 3.4081 -0.4937 -5.3736 39 1 3.8929 0.3627 -3.8907 40 1 2.6135 -2.8122 -6.8891 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103441722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:59 Heat of formation + Delta-G solvation = -47.016994 kcal Electronic energy + Delta-G solvation = -23666.449180 eV Core-core repulsion = 20062.683925 eV Total energy + Delta-G solvation = -3603.765255 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.72210 -40.07708 -38.72658 -35.60571 -34.80858 -33.24130 -32.88460 -31.13724 -29.77377 -28.73737 -26.45622 -25.29728 -24.69673 -23.27286 -21.67124 -20.96081 -20.08985 -19.10339 -18.20453 -16.81013 -16.50680 -16.33637 -16.12039 -15.60709 -15.20895 -14.94317 -14.76364 -14.49639 -14.04221 -13.54026 -13.31902 -13.11857 -12.98389 -12.63062 -12.57472 -12.13841 -12.04140 -11.65163 -11.44891 -11.26496 -11.11546 -10.79452 -10.76301 -10.31746 -10.22286 -10.06455 -10.00936 -9.30915 -9.21552 -9.04002 -8.90030 -8.48106 -7.70899 -6.12156 -4.20544 1.18627 1.88087 2.70839 3.01426 3.16861 3.23436 3.30793 3.32431 3.34433 3.89860 4.35339 4.41000 4.50156 4.83281 4.94856 5.18865 5.21137 5.27575 5.33904 5.45053 5.59617 5.70769 5.76884 5.88845 5.99014 6.06639 6.15888 6.33096 6.39301 6.71413 6.72941 6.76457 6.99087 7.31611 7.43161 7.52979 7.65554 7.94544 8.11879 8.19412 8.41500 8.72668 8.89993 9.46111 10.93147 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.027998 B = 0.003292 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.831800 B = 8502.480430 C = 8775.832137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.126 3.874 3 H 0.109 0.891 4 N -0.705 5.705 5 C 0.589 3.411 6 O -0.542 6.542 7 C -0.234 4.234 8 C -0.165 4.165 9 C -0.044 4.044 10 O -0.175 6.175 11 C 0.026 3.974 12 C 0.502 3.498 13 O -0.552 6.552 14 N -0.584 5.584 15 C 0.079 3.921 16 C 0.258 3.742 17 H 0.064 0.936 18 C -0.148 4.148 19 C -0.526 4.526 20 H 0.060 0.940 21 C 0.065 3.935 22 N -0.887 5.887 23 Si 0.899 3.101 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.407 0.593 31 H 0.159 0.841 32 H 0.208 0.792 33 H 0.214 0.786 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.031 0.969 38 H 0.095 0.905 39 H 0.012 0.988 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.024 3.734 17.632 18.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.018 3.982 3 H 0.127 0.873 4 N -0.357 5.357 5 C 0.377 3.623 6 O -0.420 6.420 7 C -0.238 4.238 8 C -0.184 4.184 9 C -0.110 4.110 10 O -0.070 6.070 11 C -0.045 4.045 12 C 0.287 3.713 13 O -0.432 6.432 14 N -0.314 5.314 15 C -0.065 4.065 16 C 0.158 3.842 17 H 0.082 0.918 18 C -0.207 4.207 19 C -0.565 4.565 20 H 0.078 0.922 21 C -0.138 4.138 22 N -0.526 5.526 23 Si 0.727 3.273 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.199 1.199 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.244 0.756 31 H 0.177 0.823 32 H 0.225 0.775 33 H 0.231 0.769 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.113 0.887 39 H 0.031 0.969 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.662 3.704 17.624 18.022 hybrid contribution -0.768 -0.490 -0.788 1.205 sum -1.430 3.215 16.836 17.200 Atomic orbital electron populations 1.22355 0.93073 1.03409 1.03911 1.20813 0.95688 0.97849 0.83896 0.87284 1.45609 1.66958 1.14703 1.08472 1.17221 0.77174 0.86073 0.81840 1.90767 1.50853 1.15368 1.85026 1.21515 1.11980 0.94532 0.95808 1.22779 1.03717 1.00891 0.91026 1.23938 1.05840 0.83501 0.97749 1.83801 1.66318 1.36798 1.20041 1.24597 0.97637 0.96895 0.85347 1.20282 0.81212 0.85036 0.84775 1.90630 1.39435 1.26885 1.86217 1.48172 1.48728 1.27921 1.06573 1.21813 0.94983 0.87554 1.02112 1.18992 0.94334 0.91391 0.79464 0.91801 1.22110 0.97317 0.99021 1.02234 1.21298 0.92587 1.36605 1.06020 0.92188 1.24893 0.95943 0.95562 0.97359 1.69872 1.19305 1.40675 1.22702 0.86483 0.82434 0.78293 0.80113 1.20589 1.21108 1.19915 0.89558 0.91845 0.91451 0.75615 0.82312 0.77524 0.76945 0.92521 0.92460 0.90584 0.94959 0.88691 0.96914 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 9.12 37.16 0.34 -1.98 16 2 C 0.13 1.97 2.18 -69.08 -0.15 1.82 16 3 H 0.11 1.71 6.83 -51.93 -0.35 1.35 16 4 N -0.70 -10.26 4.94 -56.02 -0.28 -10.54 16 5 C 0.59 8.76 7.78 -12.54 -0.10 8.66 16 6 O -0.54 -9.56 16.65 5.26 0.09 -9.47 16 7 C -0.23 -2.87 6.31 -103.27 -0.65 -3.52 16 8 C -0.16 -1.73 11.01 -37.45 -0.41 -2.14 16 9 C -0.04 -0.36 12.03 29.30 0.35 -0.01 16 10 O -0.17 -1.67 10.52 7.67 0.08 -1.59 16 11 C 0.03 0.25 11.61 30.07 0.35 0.60 16 12 C 0.50 9.88 7.14 -10.99 -0.08 9.80 16 13 O -0.55 -12.58 15.17 5.56 0.08 -12.50 16 14 N -0.58 -11.91 2.75 -175.26 -0.48 -12.39 16 15 C 0.08 1.27 8.04 59.85 0.48 1.75 16 16 C 0.26 6.38 2.63 -69.09 -0.18 6.19 16 17 H 0.06 1.83 6.90 -51.93 -0.36 1.47 16 18 C -0.15 -3.47 8.95 37.16 0.33 -3.13 16 19 C -0.53 -13.79 8.37 -34.44 -0.29 -14.08 16 20 H 0.06 1.54 7.65 -52.49 -0.40 1.14 16 21 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 22 N -0.89 -24.60 11.32 55.43 0.63 -23.97 16 23 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H 0.09 1.11 4.53 -51.93 -0.24 0.87 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.41 5.52 6.76 -40.82 -0.28 5.24 16 31 H 0.16 1.53 8.06 -52.49 -0.42 1.10 16 32 H 0.21 0.82 8.06 -52.49 -0.42 0.39 16 33 H 0.21 1.52 7.47 -52.49 -0.39 1.13 16 34 H 0.06 0.86 6.95 -51.93 -0.36 0.50 16 35 H 0.06 0.75 6.01 -51.93 -0.31 0.44 16 36 H 0.08 1.24 6.43 -51.93 -0.33 0.90 16 37 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 38 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 39 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 LS Contribution 333.81 15.07 5.03 5.03 Total: -1.00 -32.83 333.81 -4.91 -37.73 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -4.93 Total: 6.51 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -0.10 Total: 5.60 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.13 Total: -46.90 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: 0.25 Total: -23.56 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.83 -4.91 -37.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.282 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds